Gene/Protein Characteristic Table for KIAA1555
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Product ID ORK01693
Accession No AB046775
Description human immunodeficiency virus type I enhancer binding protein 3, transcript variant 1
Clone name fh17482s2
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (8473 bp)
Predicted protein sequence (2414 aa)
Flexi ORF Clone FXC01693
Source Human fetal brain
Rouge ID mKIAA1555 by Kazusa Mouse cDNA Project
Note We replaced fh17482s1 and fh17482, former representative clones for KIAA1555 with fh17482s2. (2008/8/27,2003/4/2)
Features of the cloned cDNA sequence

Length: 8473 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 240 bp
Genome contig ID gi89161185r_41648488
PolyA signal sequence
Flanking genome sequence
(99981 - 99932)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 1 r 41748469 42156965 8 99.1 Perfect prediction
Features of the protein sequence

Length: 2414 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAI52564 0 100.0 HIVEP3 protein ...
Homo sapiens
EAX07173 0 99.9 human immunodef...
Homo sapiens
CAI14537 0 99.8 human immunodef...
Homo sapiens
Q5T1R4 0 99.8 Transcription f...
Homo sapiens
AAK01082 0 99.1 kappa B and V(D...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR007087 201 223 PF00096 Zinc finger
IPR007087 229 251 PF00096 Zinc finger
IPR007087 652 675 PF00096 Zinc finger
IPR007087 1763 1785 PF00096 Zinc finger
IPR007087 1791 1815 PF00096 Zinc finger
HMMSmart IPR015880 201 223 SM00355 Zinc finger
IPR015880 229 251 SM00355 Zinc finger
IPR015880 652 672 SM00355 Zinc finger
IPR015880 1763 1785 SM00355 Zinc finger
IPR015880 1791 1815 SM00355 Zinc finger
ProfileScan IPR007087 201 228 PS50157 Zinc finger
IPR007087 229 256 PS50157 Zinc finger
IPR007087 652 679 PS50157 Zinc finger
IPR007087 1763 1790 PS50157 Zinc finger
IPR007087 1791 1820 PS50157 Zinc finger
ScanRegExp IPR002034 75 91 PS00815 Alpha-isopropylmalate/homocitrate synthase
IPR007087 203 223 PS00028 Zinc finger
IPR007087 231 253 PS00028 Zinc finger
IPR007087 1765 1785 PS00028 Zinc finger
IPR007087 1793 1815 PS00028 Zinc finger
Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 1
Experimental conditions
Panel name CCR
PCR product length 190 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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