Gene/Protein Characteristic Table for KIAA1390
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Product ID ORK00226
Accession No AB037811
Description family with sequence similarity 63, member A, transcript variant 1
Clone name hh08938
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5222 bp)
Predicted protein sequence (505 aa)
Flexi ORF Clone FXC00226
Source Human adult brain
Rouge ID mKIAA1390 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5222 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 3659 bp
Genome contig ID gi89161185r_149132310
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TTATGAGAGATTTTTAAATAAAAACTTTTAATTGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATTCCTGTGTTTTTTTTTTTCTGTGCACCAGTGTTGTCATCAATTCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 149232310 149241870 10 99.1 Perfect prediction
Features of the protein sequence
Description

Length: 505 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG63364 1.3e-190 99.2 unnamed protein...
Homo sapiens
Q8N5J2 7.1e-179 100.0 Protein FAM63A.
Homo sapiens
Q5R7G8 1.5e-172 96.4 Protein FAM63A.
Pongo abelii
XP_001929700 8e-153 87.5 similar to Y55F...
Sus scrofa
XP_001491201 8e-153 87.3 similar to Y55F...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB032990 2.2e-54 58.2 KIAA1164
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR007518 179 304 PF04424 Protein of unknown function DUF544
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GATAGGGTTCAAGGTTGTGTG
Primer_r AGCAATGTTTCAGCCTAAGGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f GATAGGGTTCAAGGTTGTGTG
Primer_r AGCAATGTTTCAGCCTAAGGG
PCR product length 116 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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