hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01292517/chunk_1/iprscan-20080502-01292517.nocrc
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Query sequence: KIAA1390
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04424.4.ls Protein of unknown function (DUF544)           279.4    6.6e-81   1
PF04424.4.fs Protein of unknown function (DUF544)           277.6    2.3e-80   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04424.4.fs   1/1     179   304 ..     1   150 []   277.6  2.3e-80
PF04424.4.ls   1/1     179   304 ..     1   150 []   279.4  6.6e-81

Alignments of top-scoring domains:
PF04424.4.fs: domain 1 of 1, from 179 to 304: score 277.6, E = 2.3e-80
                   *->aNvLiLkpkvtRyaeEliRLppkkevvTseeLvelLvDvlLqvkpkE
                      +N+L+L++kv+        Lpp+kev+Ts+eL+++L+++lL++kp+E
    KIAA1390   179    MNILFLQWKVK--------LPPQKEVITSDELMAHLGNCLLSIKPQE 217  

                   kdEglkenfeqNiqdlldlLpkLhtGLdVNvkFnRkYLivmtGnvLLaCg
                   k+Egl++nf+qN++d++++LpkL+tGLdVNv+F+               g
    KIAA1390   218 KSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT---------------G 252  

                   iddFEyTpElsIFdLlnvpLYHGWlvDpqideNiveaigklSYnelvekl
                   ++dFEyTpE+s+FdLl++pLYHGWlvDpq++e +v+a+gklSYn+lve++
    KIAA1390   253 VSDFEYTPECSVFDLLGIPLYHGWLVDPQSPE-AVRAVGKLSYNQLVERI 301  

                   vql<-*
                   +++   
    KIAA1390   302 ITC    304  

PF04424.4.ls: domain 1 of 1, from 179 to 304: score 279.4, E = 6.6e-81
                   *->aNvLiLkpkvtRyaeEliRLppkkevvTseeLvelLvDvlLqvkpkE
                      +N+L+L++kv+        Lpp+kev+Ts+eL+++L+++lL++kp+E
    KIAA1390   179    MNILFLQWKVK--------LPPQKEVITSDELMAHLGNCLLSIKPQE 217  

                   kdEglkenfeqNiqdlldlLpkLhtGLdVNvkFnRkYLivmtGnvLLaCg
                   k+Egl++nf+qN++d++++LpkL+tGLdVNv+F+               g
    KIAA1390   218 KSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT---------------G 252  

                   iddFEyTpElsIFdLlnvpLYHGWlvDpqideNiveaigklSYnelvekl
                   ++dFEyTpE+s+FdLl++pLYHGWlvDpq++e +v+a+gklSYn+lve++
    KIAA1390   253 VSDFEYTPECSVFDLLGIPLYHGWLVDPQSPE-AVRAVGKLSYNQLVERI 301  

                   vql<-*
                   +++   
    KIAA1390   302 ITC    304  

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