Gene/Protein Characteristic Table for KIAA1041
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Product ID ORK02015
Accession No AB028964
Description forkhead box J3, transcript variant 1
Clone name fh02801
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5341 bp)
Predicted protein sequence (642 aa)
Flexi ORF Clone FXC02015
Source Human fetal brain
Rouge ID mKIAA1041 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 5341 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 3160 bp
Genome contig ID gi89161185r_42314807
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 1 r 42414807 42573223 15 99.3 Perfect prediction
Features of the protein sequence

Length: 642 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9UPW0 7.2e-201 100.0 Forkhead box pr...
Homo sapiens
AAI51829 2.5e-200 99.8 Forkhead box J3...
Homo sapiens
XP_001085783 3.5e-200 99.7 similar to fork...
Macaca mulatta
EAX07162 4.3e-200 99.7 forkhead box J3...
Homo sapiens
XP_001172886 2.5e-195 99.8 forkhead box J3...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001766 101 175 PD000425 Fork head transcription factor
FPrintScan IPR001766 98 111 PR00053 Fork head transcription factor
IPR001766 119 136 PR00053 Fork head transcription factor
IPR001766 142 159 PR00053 Fork head transcription factor
HMMPfam IPR001766 98 197 PF00250 Fork head transcription factor
HMMSmart IPR001766 96 186 SM00339 Fork head transcription factor
ProfileScan IPR001766 98 193 PS50039 Fork head transcription factor
ScanRegExp IPR001766 98 111 PS00657 Fork head transcription factor
IPR001766 142 148 PS00658 Fork head transcription factor
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 1
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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