Gene/Protein Characteristic Table for KIAA0772
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Product ID ORK01994
Accession No AB018315
Description oxysterol binding protein-like 2, transcript variant 1
Clone name hk05119
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3879 bp)
Predicted protein sequence (469 aa)
Flexi ORF Clone FXC01994
Source Human adult brain
Rouge ID mKIAA0772 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3879 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2325 bp
Genome contig ID gi51511747f_60164506
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CTTAATGTGTGGAAAGTGATGGCCTTCTCGTGGGC
Flanking genome sequence
(140160 - 140209)
----+----*----+----*----+----*----+----*----+----*
CACGCGTTTGGGTGTGAGTATGGCCTTGACCAAGGGTCTTGGTGCTTTAT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 20 f 60247030 60304664 14 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 469 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAC22307 2.9e-208 100.0 oxysterol bindi...
Homo sapiens
XP_001144165 7.3e-208 99.8 oxysterol-bindi...
Pan troglodytes
Q9H1P3 4.3e-203 97.5 Oxysterol-bindi...
Homo sapiens
XP_001144248 1.1e-202 97.3 oxysterol-bindi...
Pan troglodytes
BAG37950 7e-202 97.3 unnamed protein...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB014604 1.5e-39 38.4 KIAA0704
AB051451 4.6e-35 36.9 KIAA1664
AB040884 9e-21 26.9 KIAA1451
AB040967 7.3e-19 28.5 KIAA1534
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000648 24 461 PF01237 Oxysterol-binding protein
ScanRegExp IPR000648 163 173 PS01013 Oxysterol-binding protein
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTCAGGATTGTGGCGTTATTC
Primer_r TCTCACCTCTGGATGTTCTAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 9
Experimental conditions
Panel name GeneBridge 4
Primer_f TTCAGGATTGTGGCGTTATTC
Primer_r TCTCACCTCTGGATGTTCTAG
PCR product length 165 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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