Gene/Protein Characteristic Table for KIAA0770
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Product ID ORK00631
Accession No AB018313
Description vacuolar protein sorting 39 homolog (S. cerevisiae), transcript variant 2
Clone name hk05040s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4793 bp)
Predicted protein sequence (913 aa)
Flexi ORF Clone FXC00631
Source Human adult brain
Rouge ID mKIAA0770 by Kazusa Mouse cDNA Project
Note We replaced hk05040, former representative clones for KIAA0770 with hk05040s1. (2002/5/10)
Features of the cloned cDNA sequence

Length: 4793 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2041 bp
Genome contig ID gi51511731r_40138203
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 15 r 40238203 40287767 25 100.0 Perfect prediction
Features of the protein sequence

Length: 913 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAQ05978 0 100.0 VPS39 [Homo sap...
Homo sapiens
CAD97646 0 99.8 hypothetical pr...
Homo sapiens
CAH91357 0 99.5 hypothetical pr...
Pongo abelii
XP_001103143 0 99.4 vacuolar protei...
Macaca mulatta
CAL37416 0 99.7 hypothetical pr...
synthetic construct
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001180 53 321 PF00780 Citron-like
HMMSmart IPR001180 48 327 SM00036 Citron-like
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 15
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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