Gene/Protein Characteristic Table for KIAA0607
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Product ID ORK00573
Accession No AB011179
Description neurochondrin, transcript variant 2
Clone name hh00181a
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3311 bp)
Predicted protein sequence (731 aa)
Flexi ORF Clone FXC00573
Source Human adult brain
Rouge ID mKIAA0607 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3311 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1114 bp
Genome contig ID gi89161185f_35696032
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TGCACATGTGGACACTCAATAAATGTTCATTGGTG
Flanking genome sequence
(108930 - 108979)
----+----*----+----*----+----*----+----*----+----*
ACGAGAAGCCTCCTGCGTGGTCTGCCCTGCACCTGCTCTCTCCCTTCCAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 f 35796032 35804960 7 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 731 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001102087 0 99.7 similar to neur...
Macaca mulatta
XP_513308 0 99.9 neurochondrin [...
Pan troglodytes
AAD05029 0 99.3 unknown [Homo s...
Homo sapiens
Q9UBB6 0 99.3 Neurochondrin.
Homo sapiens
BAA77831 0 100.0 neurochondrin-2...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR008709 20 731 PF05536 Neurochondrin
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f CCTGTCCTTATCCCTGCTTGG
Primer_r GTAATCACTGGGGAAACATGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f CCTGTCCTTATCCCTGCTTGG
Primer_r GTAATCACTGGGGAAACATGC
PCR product length 126 bp
PCR conditions 95 °C15 sec67 °C60 sec30 cycles
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