Gene/Protein Characteristic Table for KIAA0310
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Product ID ORK00048
Accession No AB002308
Description SEC16 homolog A, endoplasmic reticulum export factor, transcript variant 1
Clone name ee03470
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
cDNA sequence DNA sequence (9031 bp)
Predicted protein sequence (2388 aa)
Flexi ORF Clone FXC00048
Source
Rouge ID mKIAA0310 by Kazusa Mouse cDNA Project
Note We replaced hg00111 and hg00111s1, former representative clones for KIAA0310 with ee03470. (2002/5/10,2005/08/06)
Features of the cloned cDNA sequence
Description

Length: 9031 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Integrity of 3' end
Length of 3'UTR 1648 bp
Genome contig ID gi89161216r_138354380
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
TGCAAATTGTTGAATAAAATATTTTGCGCTCCTTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGCACCTTCACCTGTGGTTCCCTTTGGTTTGCTGGAAGCGAGTGAGTGC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 9 r 138454380 138497328 32 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 2388 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O15027 0 100.0 Protein transpo...
Homo sapiens
CAI13952 0 97.9 SEC16 homolog A...
Homo sapiens
ABI78944 0 98.9 SEC16L [Homo sa...
Homo sapiens
AAI25019 0 96.6 SEC16A protein ...
Homo sapiens
EAW88236 0 100.0 hCG2022352, iso...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB067515 1.3e-27 36.3 KIAA1928
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f GAATCAAAAGTCGTGGCAGTC
Primer_r TCCATTTGTCCTTGTCACTTG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 9
Experimental conditions
Panel name GeneBridge 4
Primer_f GAATCAAAAGTCGTGGCAGTC
Primer_r TCCATTTGTCCTTGTCACTTG
PCR product length 146 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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