Gene/Protein Characteristic Table for KIAA0272
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Product ID ORK00486
Accession No D87462
Description BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
Clone name ha06802s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3589 bp)
Predicted protein sequence (759 aa)
Flexi ORF Clone FXC00486
Source Human adult brain
Rouge ID mKIAA0272 by Kazusa Mouse cDNA Project
Note We replaced ha06802, former representative clones for KIAA0272 with ha06802s1. (2002/5/10)
Features of the cloned cDNA sequence

Length: 3589 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1275 bp
Genome contig ID gi89161205r_52310069
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 3 r 52410069 52419058 17 100.0 Perfect prediction
Features of the protein sequence

Length: 759 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q92560 0 100.0 Ubiquitin carbo...
Homo sapiens
XP_001171970 0 99.7 BRCA1 associate...
Pan troglodytes
XP_001089173 0 98.6 similar to BRCA...
Macaca mulatta
XP_541853 0 96.0 similar to BRCA...
Canis lupus fam...
XP_001493524 0 95.3 BRCA1 associate...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001578 42 262 PD350662 Peptidase C12
FPrintScan IPR001578 37 54 PR00707 Peptidase C12
IPR001578 115 132 PR00707 Peptidase C12
IPR001578 210 220 PR00707 Peptidase C12
HMMPfam IPR001578 34 246 PF01088 Peptidase C12
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 3
Experimental conditions
Panel name Genebridge 4
PCR product length 183 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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