hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22094464/chunk_1/iprscan-20080501-22094464.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0272 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01088.11.ls Ubiquitin carboxyl-terminal hydrolase, 395.4 7.6e-116 1 PF01088.11.fs Ubiquitin carboxyl-terminal hydrolase, 393.5 3e-115 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01088.11.fs 1/1 34 246 .. 1 225 [] 393.5 3e-115 PF01088.11.ls 1/1 34 246 .. 1 225 [] 395.4 7.6e-116 Alignments of top-scoring domains: PF01088.11.fs: domain 1 of 1, from 34 to 246: score 393.5, E = 3e-115 *->rWlpLESnPgVfTelieklGvkgdEvqveDvysLddElLemiprPvh +Wl+LES+Pg+fT l+e++Gvkg vqve++y+L+ ++++ Pv+ KIAA0272 34 GWLELESDPGLFTLLVEDFGVKG--VQVEEIYDLQ----SKCQGPVY 74 AlIFLFpwtekve..ekrkeepkgikvqdsdvsdsvFFaKQtIpNACGTq ++IFLF+w+e++++++k+++ +++ v+d+d +++FFa+Q IpN+C+T+ KIAA0272 75 GFIFLFKWIEERRsrRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATH 124 ALLHaLlNnedeidvdlGstLkrFleftkdlsPeeRgkaLeNseeiraaH ALL++LlN+ vdlG+tL+r+++ftk++sPe +g+a++N++e+++aH KIAA0272 125 ALLSVLLNCS---SVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAH 171 NSfaraqegqteekeaaGlS.vrdedvnyHFIayVpinGtLYELDGrkeg NS+ar+++++++ek+ +GlS vr +++++HF++yVpi+G+L+ELDG+k + KIAA0272 172 NSHARPEPRHLPEKQ-NGLSaVR-TMEAFHFVSYVPITGRLFELDGLKVY 219 PinhGetsetaTdtllkDavrpVikermery<-* Pi+hG++ e d++++D++r+Vi+er++ + KIAA0272 220 PIDHGPWGE---DEEWTDKARRVIMERIG-L 246 PF01088.11.ls: domain 1 of 1, from 34 to 246: score 395.4, E = 7.6e-116 *->rWlpLESnPgVfTelieklGvkgdEvqveDvysLddElLemiprPvh +Wl+LES+Pg+fT l+e++Gvkg vqve++y+L+ ++++ Pv+ KIAA0272 34 GWLELESDPGLFTLLVEDFGVKG--VQVEEIYDLQ----SKCQGPVY 74 AlIFLFpwtekve..ekrkeepkgikvqdsdvsdsvFFaKQtIpNACGTq ++IFLF+w+e++++++k+++ +++ v+d+d +++FFa+Q IpN+C+T+ KIAA0272 75 GFIFLFKWIEERRsrRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATH 124 ALLHaLlNnedeidvdlGstLkrFleftkdlsPeeRgkaLeNseeiraaH ALL++LlN+ vdlG+tL+r+++ftk++sPe +g+a++N++e+++aH KIAA0272 125 ALLSVLLNCS---SVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAH 171 NSfaraqegqteekeaaGlS.vrdedvnyHFIayVpinGtLYELDGrkeg NS+ar+++++++ek+ +GlS vr +++++HF++yVpi+G+L+ELDG+k + KIAA0272 172 NSHARPEPRHLPEKQ-NGLSaVR-TMEAFHFVSYVPITGRLFELDGLKVY 219 PinhGetsetaTdtllkDavrpVikermery<-* Pi+hG++ e d++++D++r+Vi+er++ + KIAA0272 220 PIDHGPWGE---DEEWTDKARRVIMERIG-L 246 //