Gene/Protein Characteristic Table for KIAA0179
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Product ID ORK01056
Accession No D80001
Description ribosomal RNA processing 1B
Clone name ha02738
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4994 bp)
Predicted protein sequence (762 aa)
Flexi ORF Clone FXC01056
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0179 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4994 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 2705 bp
Genome contig ID gi51511750f_43803908
PolyA signal sequence
(ATTAAA,-27)
+----*----+----*----+----*----+----
CAAGTCCAATTAAAAAAAAAAAGTCTTTGCCCTCC
Flanking genome sequence
(136480 - 136529)
----+----*----+----*----+----*----+----*----+----*
AATTTGTGTTTGATGTTGACTTTCAGTATGGGTAAAAATAGGCCTCTTTG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 21 f 43903908 43940386 16 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 762 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG11148 0 100.0 RRP1-like prote...
synthetic construct
Q14684 0 97.6 Ribosomal RNA p...
Homo sapiens
XP_001144331 0 96.8 hypothetical pr...
Pan troglodytes
XP_001144086 1.8e-208 92.5 hypothetical pr...
Pan troglodytes
XP_001104749 2.8e-195 85.2 hypothetical pr...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR010301 30 224 PF05997 Nucleolar
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 21
Experimental conditions
Panel name Stanford G3
Primer_f GTTGCAGGTGTTGGGAGGAAG
Primer_r ATTGGACTTGGCTTTGACGAG
PCR product length 158 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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