hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19331017/chunk_1/iprscan-20080501-19331017.nocrc
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Query sequence: KIAA0179
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05997.3.fs Nucleolar protein,Nop52                        388.8   7.6e-114   2
PF05997.3.ls Nucleolar protein,Nop52                        382.5     6e-112   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05997.3.fs   1/2      30    74 ..     1    46 [.    73.8  1.7e-19
PF05997.3.ls   1/1      30   224 ..     1   230 []   382.5   6e-112
PF05997.3.fs   2/2      75   224 ..    65   230 .]   315.0  1.2e-91

Alignments of top-scoring domains:
PF05997.3.fs: domain 1 of 2, from 30 to 74: score 73.8, E = 1.7e-19
                   *->eevkiaqrLAscekvtRdRavRtiLrdyipartqrktGgfsdedLl<
                      +e+++aqrLAs+ek++RdRav+ +Lr+yi+ +tqr+tGgfs+e+Ll 
    KIAA0179    30    AEIQFAQRLASSEKGIRDRAVK-KLRQYISVKTQRETGGFSQEELL  74   

                   -*
                     
    KIAA0179     -    -    

PF05997.3.ls: domain 1 of 1, from 30 to 224: score 382.5, E = 6e-112
                   *->eevkiaqrLAscekvtRdRavRtiLrdyipartqrktGgfsdedLlk
                      +e+++aqrLAs+ek++RdRav+ +Lr+yi+ +tqr+tGgfs+e+Ll 
    KIAA0179    30    AEIQFAQRLASSEKGIRDRAVK-KLRQYISVKTQRETGGFSQEELL- 74   

                   lWKGLFYcmWmqDKpLlQeeLadriaqlvhsfnspeakhlknvFLFvqaF
                                    QeeLa++iaqlvh++n+++a+hl     F+q+F
    KIAA0179    75 -----------------QEELANTIAQLVHAVNNSAAQHL-----FIQTF 102  

                   LqTMrrEWsgIDrlRLDKFymLiRrflresfefLkansWnedlikqllsi
                   +qTM+rEW+gIDrlRLDK+ymLiR++lr+sfe+Lk+n+W+e++ik +l++
    KIAA0179   103 WQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDV 152  

                   lqeevlspdskspgnGlkyHfidvFLeELLGneYFLksakvlageLtakq
                   l++evl+p+s+sp nG+++Hfid++L+EL         +kv+++eL+a+q
    KIAA0179   153 LMKEVLCPESQSP-NGVRFHFIDIYLDEL---------SKVGGKELLADQ 192  

                   vlllldPFvkilaktkiDkyLvakikssvFeti<-*
                   +l+++dPF+ki+aktk D++Lv++i+++vFe+i   
    KIAA0179   193 NLKFIDPFCKIAAKTK-DHTLVQTIARGVFEAI    224  

PF05997.3.fs: domain 2 of 2, from 75 to 224: score 315.0, E = 1.2e-91
                   *->QeeLadriaqlvhsfnspeakhlknvFLFvqaFLqTMrrEWsgIDrl
                      QeeLa++iaqlvh++n+++a+hl     F+q+F+qTM+rEW+gIDrl
    KIAA0179    75    QEELANTIAQLVHAVNNSAAQHL-----FIQTFWQTMNREWKGIDRL 116  

                   RLDKFymLiRrflresfefLkansWnedlikqllsilqeevlspdskspg
                   RLDK+ymLiR++lr+sfe+Lk+n+W+e++ik +l++l++evl+p+s+sp 
    KIAA0179   117 RLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSP- 165  

                   nGlkyHfidvFLeELLGneYFLksakvlageLtakqvlllldPFvkilak
                   nG+++Hfid++L+EL         +kv+++eL+a+q+l+++dPF+ki+ak
    KIAA0179   166 NGVRFHFIDIYLDEL---------SKVGGKELLADQNLKFIDPFCKIAAK 206  

                   tkiDkyLvakikssvFeti<-*
                   tk D++Lv++i+++vFe+i   
    KIAA0179   207 TK-DHTLVQTIARGVFEAI    224  

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