Gene/Protein Characteristic Table for KIAA0165
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Product ID ORK04916
Accession No D79987
Description extra spindle pole bodies homolog 1 (S. cerevisiae)
Clone name ha02421
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (6662 bp)
Predicted protein sequence (2093 aa)
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0165 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 6662 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 161 bp
Genome contig ID gi89161190f_51848384
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TGATTTAACCTCAGTATAATAAAGATACATCATTT
Flanking genome sequence
(125304 - 125353)
----+----*----+----*----+----*----+----*----+----*
AAACCCTGTTTTGCGTAGTTTATCTGAGAACATTTAAAGACACGGCATGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 12 f 51948384 51973686 31 99.6 Perfect prediction
Features of the protein sequence
Description

Length: 2093 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q14674 0 100.0 Separin; Separa...
Homo sapiens
EAW96681 0 99.8 extra spindle p...
Homo sapiens
NP_036423 0 99.8 extra spindle p...
Homo sapiens
XP_001103494 0 96.0 similar to extr...
Macaca mulatta
EAW96682 0 99.8 extra spindle p...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR005314 1681 2042 PF03568 Peptidase C50
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 12
Experimental conditions
Panel name Genebridge 4
Primer_f AGAAGGAGGCTGAAGAGTTGC
Primer_r AAAAGGCAAACACAAAACAGC
PCR product length 102 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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