Gene/Protein Characteristic Table for KIAA0070
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00395
Accession No D31890
Description lysyl-tRNA synthetase, transcript variant 2
Clone name ha01530
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (1970 bp)
Predicted protein sequence (601 aa)
Flexi ORF Clone FXC00395
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0070 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 1970 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 162 bp
Genome contig ID gi51511732r_74119132
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 16 r 74219132 74239052 14 99.9 Perfect prediction
Features of the protein sequence

Length: 601 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_511115 0 99.7 lysyl-tRNA synt...
Pan troglodytes
BAG09591 0 100.0 lysyl-tRNA synt...
synthetic construct
Q15046 0 99.8 Lysyl-tRNA synt...
Homo sapiens
XP_001104312 0 96.8 lysyl-tRNA synt...
Macaca mulatta
EAW95621 0 96.5 lysyl-tRNA synt...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002313 263 273 PR00982 Lysyl-tRNA synthetase
IPR002313 279 295 PR00982 Lysyl-tRNA synthetase
IPR002313 308 321 PR00982 Lysyl-tRNA synthetase
IPR002313 326 343 PR00982 Lysyl-tRNA synthetase
IPR002313 462 478 PR00982 Lysyl-tRNA synthetase
HMMPfam IPR004365 130 210 PF01336 Nucleic acid binding
IPR004364 226 579 PF00152 Aminoacyl-tRNA synthetase
HMMTigr IPR002313 76 581 TIGR00499 Lysyl-tRNA synthetase
ProfileScan IPR006195 248 579 PS50862 Aminoacyl-tRNA synthetase
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 16
Experimental conditions
Panel name Genebridge 4
PCR product length 340 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT