hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16321697/chunk_1/iprscan-20080501-16321697.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0070 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00152.11.ls tRNA synthetases class II (D, K and N) 441.7 8.8e-130 1 PF00152.11.fs tRNA synthetases class II (D, K and N) 439.8 3.3e-129 1 PF01336.15.ls OB-fold nucleic acid binding domain 64.9 2.5e-16 1 PF01336.15.fs OB-fold nucleic acid binding domain 63.0 2.8e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01336.15.fs 1/1 130 210 .. 1 85 [] 63.0 2.8e-16 PF01336.15.ls 1/1 130 210 .. 1 85 [] 64.9 2.5e-16 PF00152.11.fs 1/1 226 579 .. 1 386 [] 439.8 3.3e-129 PF00152.11.ls 1/1 226 579 .. 1 386 [] 441.7 8.8e-130 Alignments of top-scoring domains: PF01336.15.fs: domain 1 of 1, from 130 to 210: score 63.0, E = 2.8e-16 *->VtvaGwVtsvrrsggkvafltLrDgtgGsiqvvlfk......eeaek +vaG+++++r sggk++f++Lr + ++qv++++++ +++ee+ KIAA0070 130 LKVAGRIHAKRASGGKLIFYDLRGEG-VKLQVMANSrnykseEEFIH 175 lak.lkeGdvvrvtGkvkkrpggeqNnlkTGeKAlelvveeievl<-* + ++l++Gd+++v G + k+++ge l+++ ei++l KIAA0070 176 INNkLRRGDIIGVQGNPGKTKKGE----------LSIIPYEITLL 210 PF01336.15.ls: domain 1 of 1, from 130 to 210: score 64.9, E = 2.5e-16 *->VtvaGwVtsvrrsggkvafltLrDgtgGsiqvvlfk......eeaek +vaG+++++r sggk++f++Lr + ++qv++++++ +++ee+ KIAA0070 130 LKVAGRIHAKRASGGKLIFYDLRGEG-VKLQVMANSrnykseEEFIH 175 lak.lkeGdvvrvtGkvkkrpggeqNnlkTGeKAlelvveeievl<-* + ++l++Gd+++v G + k+++ge l+++ ei++l KIAA0070 176 INNkLRRGDIIGVQGNPGKTKKGE----------LSIIPYEITLL 210 PF00152.11.fs: domain 1 of 1, from 226 to 579: score 439.8, E = 3.3e-129 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx *->seetRLkyRyLDLRrpkmqr.nlklRskiikaiRefLderGFlEVET + etR+++RyLDL+ ++ r+ +++Rskii +iR+fLde GFlE+ET KIAA0070 226 DKETRYRQRYLDLILNDFVRqKFIIRSKIITYIRSFLDELGFLEIET 272 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx PiLtkstpEGgARdFlVpSRlhpGgskklskfya.keayLpQSPQLyKQl P++ +++++ A++F++ ++ +++++y++++P+Ly ++ KIAA0070 273 PMMNIIPGGAVAKPFITY------------HNELdMNLYMRIAPELYHKM 310 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LmvaGfdRyFqIarcFRdEdlRadRHppEFTqlDlEmsFvdyeddvmdlt L+v+G+dR+++I+r FR+E++ + +H+pEFT ++++m+++dy+d +m++t KIAA0070 311 LVVGGIDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYHD-LMEIT 358 RF xxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx Edlikyvfkevlg.tk.tlkekhrdelekllgielptPdFpRitYaeAme E++++ ++k+++g++k t++ ++++ + + +++++p F+Ri++ e +e KIAA0070 359 EKMVSGMVKHITGsYKvTYHPDGPEGQAYDVDFTPP---FRRINMVEELE 405 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rygsDkpPDlRfdgldeLkdvteifkgseFkv.................. + ++ k+P++ + ++ ++ + ++ +++ KIAA0070 406 KALGMKLPETNL-------------------Feteetrkilddicvakav 436 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .........gaLRlklgeeLgLieyfkdenlfnplwVvDfPlfEwdEEek + +++ + + +L+ +f + + +np++++D+P + KIAA0070 437 ecppprttaR------LLD-KLVGEFLEVTCINPTFICDHPQI------M 473 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ryvaaHHPFtmpkdedldlLekdPekalaeayDLvlnGiyEiggGSiRIh + P+++ +++ + +l+e+++L++ Ei++++++++ KIAA0070 474 S------PLAKWHRSKE---------GLTERFELFVMK-KEICNAYTELN 507 RF xxxxxxxxxxxxxxxx x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dpelQrkrFeelGldr.a.deeaeekFgflLdAlkYGaPPHGGiAlGlDR dp +Qr+ Fee+ + a+d+ea+ +++ + Al+YG+PP++G+++G+DR KIAA0070 508 DPMRQRQLFEEQAKAKaAgDDEAMFIDENFCTALEYGLPPTAGWGMGIDR 557 RF xxxxxxxxxxxxxxxxxxxxxx LvMlLtGlesIRdVIaFPktqk<-* ++M+Lt++++I++V++FP +++ KIAA0070 558 VAMFLTDSNNIKEVLLFPAMKP 579 PF00152.11.ls: domain 1 of 1, from 226 to 579: score 441.7, E = 8.8e-130 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx *->seetRLkyRyLDLRrpkmqr.nlklRskiikaiRefLderGFlEVET + etR+++RyLDL+ ++ r+ +++Rskii +iR+fLde GFlE+ET KIAA0070 226 DKETRYRQRYLDLILNDFVRqKFIIRSKIITYIRSFLDELGFLEIET 272 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx PiLtkstpEGgARdFlVpSRlhpGgskklskfya.keayLpQSPQLyKQl P++ +++++ A++F++ ++ +++++y++++P+Ly ++ KIAA0070 273 PMMNIIPGGAVAKPFITY------------HNELdMNLYMRIAPELYHKM 310 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LmvaGfdRyFqIarcFRdEdlRadRHppEFTqlDlEmsFvdyeddvmdlt L+v+G+dR+++I+r FR+E++ + +H+pEFT ++++m+++dy+d +m++t KIAA0070 311 LVVGGIDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYHD-LMEIT 358 RF xxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx Edlikyvfkevlg.tk.tlkekhrdelekllgielptPdFpRitYaeAme E++++ ++k+++g++k t++ ++++ + + +++++p F+Ri++ e +e KIAA0070 359 EKMVSGMVKHITGsYKvTYHPDGPEGQAYDVDFTPP---FRRINMVEELE 405 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rygsDkpPDlRfdgldeLkdvteifkgseFkv.................. + ++ k+P++ + ++ ++ + ++ +++ KIAA0070 406 KALGMKLPETNL-------------------Feteetrkilddicvakav 436 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .........gaLRlklgeeLgLieyfkdenlfnplwVvDfPlfEwdEEek + +++ + + +L+ +f + + +np++++D+P + KIAA0070 437 ecppprttaR------LLD-KLVGEFLEVTCINPTFICDHPQI------M 473 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ryvaaHHPFtmpkdedldlLekdPekalaeayDLvlnGiyEiggGSiRIh + P+++ +++ + +l+e+++L++ Ei++++++++ KIAA0070 474 S------PLAKWHRSKE---------GLTERFELFVMK-KEICNAYTELN 507 RF xxxxxxxxxxxxxxxx x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dpelQrkrFeelGldr.a.deeaeekFgflLdAlkYGaPPHGGiAlGlDR dp +Qr+ Fee+ + a+d+ea+ +++ + Al+YG+PP++G+++G+DR KIAA0070 508 DPMRQRQLFEEQAKAKaAgDDEAMFIDENFCTALEYGLPPTAGWGMGIDR 557 RF xxxxxxxxxxxxxxxxxxxxxx LvMlLtGlesIRdVIaFPktqk<-* ++M+Lt++++I++V++FP +++ KIAA0070 558 VAMFLTDSNNIKEVLLFPAMKP 579 //