NDC1 ORF clone pFN21ASDB1384

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Halotag ORF Clone pFN21ASDB1384

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Clone info.

Species

human

Clone Name

pFN21ASDB1384 Sequence (with vector) Restriction Map

Product ID

FHC01014

Flexi Clone PID

FXC01014

Original Clone PID

ORK01014

ORF Sequence

DNA sequence (2022 bp)
Protein sequence (674 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384396]

Gene

KIBB1384

Symbol

NDC1

Alias : NET3, TMEM48

Description

NDC1 transmembrane nucleoporin, transcript variant 1

Original Clone ID

fj12036

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 2022 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 674 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS583.1 0 100.0 NDC1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR019049 19 667 PF09531 Nucleoporin protein Ndc1-Nup
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 25 IVASIVWSVLFLPICTTVFIIFS 47 PRIMARY 23 2 65 LYSSYVIFYFLLLSVVIIIISIF 87 PRIMARY 23 3 91 FYAVVPSIPCSRLALIGKIIHPQ 113 SECONDARY 23 4 115 LMHSFIHAAMGMVMAWCAAVITQ 137 PRIMARY 23 5 161 CLNEYHLFFLLTGAFMGYSYSLL 183 SECONDARY 23 6 208 SLLLLVKHSCVESLFLVRNFCIL 230 SECONDARY 23 7 265 LNLSLLYHVWLCGVFLLTTWYVS 287 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_060557 674 610115 100.0 100.0 XP_011540068 673 610115 100.0 97.2 NP_001162023 634 610115 94.1 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21ASDB1384 Download

>KIBB1384  2022 bp
ATGGCCACGGCCGTGAGCCGGCCCTGCGCCGGCAGGTCGCGGGACATACTGTGGCGCGTT
TTGGGCTGGAGGATAGTTGCAAGTATTGTTTGGTCAGTGCTATTTCTACCCATCTGCACC
ACAGTATTTATAATTTTCAGCAGGATTGATTTGTTTCATCCTATACAGTGGCTGTCTGAT
TCTTTCAGTGACCTGTATAGTTCCTATGTAATCTTTTACTTCCTGCTGCTGTCAGTGGTA
ATAATAATAATAAGTATTTTCAATGTGGAGTTCTATGCAGTTGTGCCTTCTATTCCTTGC
TCCAGACTAGCTCTGATAGGGAAGATCATTCATCCTCAGCAACTCATGCACTCATTTATT
CATGCTGCAATGGGAATGGTGATGGCCTGGTGTGCTGCAGTGATAACCCAGGGCCAGTAC
AGCTTTCTTGTGGTTCCCTGCACTGGTACTAACAGCTTTGGTAGCCCTGCTGCGCAAACC
TGCTTAAATGAATATCATCTTTTTTTCCTACTGACTGGAGCATTTATGGGCTATAGCTAT
AGCCTCCTGTATTTTGTTAACAACATGAACTATCTTCCATTTCCCATCATACAGCAATAC
AAGTTCTTGCGTTTTAGGAGATCTCTGCTCTTATTAGTTAAACACAGTTGTGTGGAATCA
CTGTTCCTGGTTAGAAATTTCTGCATTTTATATTATTTTCTTGGCTATATTCCCAAAGCT
TGGATTAGCACTGCTATGAACCTTCACATAGATGAGCAGGTTCATAGGCCACTTGACACA
GTGAGTGGCCTCTTAAATCTCTCGTTACTCTACCATGTCTGGCTGTGTGGTGTCTTTCTC
CTGACGACTTGGTATGTCTCATGGATACTCTTCAAAATCTATGCCACAGAGGCTCATGTG
TTTCCTGTTCAACCACCATTTGCAGAAGGGTCAGATGAGTGCCTTCCAAAAGTGTTAAAT
AGCAATCCTCCCCCCATCATAAAGTATTTAGCCTTGCAGGACCTGATGTTGCTTTCTCAA
TATTCTCCTTCACGAAGACAAGAAGTTTTCAGCCTCAGCCAACCAGGTGGACATCCCCAC
AATTGGACAGCCATTTCAAGGGAGTGTTTGAATCTTTTAAATGGTATGACTCAGAAACTG
ATTCTCTATCAAGAAGCTGCTGCTACGAATGGGAGAGTGTCTTCATCTTACCCAGTGGAA
CCTAAGAAATTAAATTCTCCAGAAGAAACTGCTTTTCAGACACCAAAATCTAGCCAGATG
CCTCGGCCTTCAGTGCCACCATTAGTTAAAACATCACTGTTTTCTTCAAAATTATCTACA
CCTGATGTTGTGAGCCCATTTGGGACCCCATTTGGCTCTAGTGTAATGAATCGGATGGCT
GGAATTTTTGATGTAAACACCTGCTATGGGTCACCGCAAAGTCCTCAGCTAATAAGAAGG
GGGCCAAGATTGTGGACATCAGCTTCTGATCAGCAAATGACTGAATTTTCTAATCCTTCT
CCATCTACCTCTATTAGTGCTGAGGGTAAGACAATGAGACAACCCAGTGTGATTTATTCA
TGGATTCAGAATAAACGTGAACAGATTAAGAATTTCTTGTCAAAACGGGTGCTGATAATG
TATTTTTTCAGTAAGCACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCCCAAATG
CATATTTGGGCATTAGAAGGTCTGTCGCACTTAGTAGCAGCATCATTTACAGAGGATAGA
TTTGGAGTTGTCCAGACGACACTACCAGCTATCCTTAATACTTTGTTGACACTGCAAGAG
GCAGTCGACAAGTACTTTAAGCTTCCTCATGCTTCCAGTAAACCACCCCGGATTTCAGGA
AGCCTTGTGGACACTTCATATAAAACATTAAGATTTGCATTCAGAGCATCACTGAAAACT
GCCATCTATCGAATAACTACTACATTTGGTGAACATCTGAATGCTGTGCAAGCATCTGCA
GAACATCAGAAAAGACTTCAACAGTTCTTGGAGTTCAAAGAA

ORF Protein

Cloned ORF protein sequence for pFN21ASDB1384 Download

>KIBB1384  674 aa
MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD
SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI
HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSY
SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA
WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV
FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM
PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR
GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM
YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE
AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA
EHQKRLQQFLEFKE

ORF+Vector

Nucleotide Sequence (with vector) for pFN21ASDB1384 Download

>pFN21ASDB1384  6751 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCTTTCGAAGGAGATAGAACCATGGCCACGGCCGTGAG
CCGGCCCTGCGCCGGCAGGTCGCGGGACATACTGTGGCGCGTTTTGGGCTGGAGGATAGT
TGCAAGTATTGTTTGGTCAGTGCTATTTCTACCCATCTGCACCACAGTATTTATAATTTT
CAGCAGGATTGATTTGTTTCATCCTATACAGTGGCTGTCTGATTCTTTCAGTGACCTGTA
TAGTTCCTATGTAATCTTTTACTTCCTGCTGCTGTCAGTGGTAATAATAATAATAAGTAT
TTTCAATGTGGAGTTCTATGCAGTTGTGCCTTCTATTCCTTGCTCCAGACTAGCTCTGAT
AGGGAAGATCATTCATCCTCAGCAACTCATGCACTCATTTATTCATGCTGCAATGGGAAT
GGTGATGGCCTGGTGTGCTGCAGTGATAACCCAGGGCCAGTACAGCTTTCTTGTGGTTCC
CTGCACTGGTACTAACAGCTTTGGTAGCCCTGCTGCGCAAACCTGCTTAAATGAATATCA
TCTTTTTTTCCTACTGACTGGAGCATTTATGGGCTATAGCTATAGCCTCCTGTATTTTGT
TAACAACATGAACTATCTTCCATTTCCCATCATACAGCAATACAAGTTCTTGCGTTTTAG
GAGATCTCTGCTCTTATTAGTTAAACACAGTTGTGTGGAATCACTGTTCCTGGTTAGAAA
TTTCTGCATTTTATATTATTTTCTTGGCTATATTCCCAAAGCTTGGATTAGCACTGCTAT
GAACCTTCACATAGATGAGCAGGTTCATAGGCCACTTGACACAGTGAGTGGCCTCTTAAA
TCTCTCGTTACTCTACCATGTCTGGCTGTGTGGTGTCTTTCTCCTGACGACTTGGTATGT
CTCATGGATACTCTTCAAAATCTATGCCACAGAGGCTCATGTGTTTCCTGTTCAACCACC
ATTTGCAGAAGGGTCAGATGAGTGCCTTCCAAAAGTGTTAAATAGCAATCCTCCCCCCAT
CATAAAGTATTTAGCCTTGCAGGACCTGATGTTGCTTTCTCAATATTCTCCTTCACGAAG
ACAAGAAGTTTTCAGCCTCAGCCAACCAGGTGGACATCCCCACAATTGGACAGCCATTTC
AAGGGAGTGTTTGAATCTTTTAAATGGTATGACTCAGAAACTGATTCTCTATCAAGAAGC
TGCTGCTACGAATGGGAGAGTGTCTTCATCTTACCCAGTGGAACCTAAGAAATTAAATTC
TCCAGAAGAAACTGCTTTTCAGACACCAAAATCTAGCCAGATGCCTCGGCCTTCAGTGCC
ACCATTAGTTAAAACATCACTGTTTTCTTCAAAATTATCTACACCTGATGTTGTGAGCCC
ATTTGGGACCCCATTTGGCTCTAGTGTAATGAATCGGATGGCTGGAATTTTTGATGTAAA
CACCTGCTATGGGTCACCGCAAAGTCCTCAGCTAATAAGAAGGGGGCCAAGATTGTGGAC
ATCAGCTTCTGATCAGCAAATGACTGAATTTTCTAATCCTTCTCCATCTACCTCTATTAG
TGCTGAGGGTAAGACAATGAGACAACCCAGTGTGATTTATTCATGGATTCAGAATAAACG
TGAACAGATTAAGAATTTCTTGTCAAAACGGGTGCTGATAATGTATTTTTTCAGTAAGCA
CCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCATATTTGGGCATTAGA
AGGTCTGTCGCACTTAGTAGCAGCATCATTTACAGAGGATAGATTTGGAGTTGTCCAGAC
GACACTACCAGCTATCCTTAATACTTTGTTGACACTGCAAGAGGCAGTCGACAAGTACTT
TAAGCTTCCTCATGCTTCCAGTAAACCACCCCGGATTTCAGGAAGCCTTGTGGACACTTC
ATATAAAACATTAAGATTTGCATTCAGAGCATCACTGAAAACTGCCATCTATCGAATAAC
TACTACATTTGGTGAACATCTGAATGCTGTGCAAGCATCTGCAGAACATCAGAAAAGACT
TCAACAGTTCTTGGAGTTCAAAGAATACGTAGTTTAAACGAATTCGGGCTCGGTACCCGG
GGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAA
AGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGG
CCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATG
CAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATT
ATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAG
GGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAA
TTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACA
TTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACG
TCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATA
CATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGA
AAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCA
TTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGAT
CAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAG
AGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGC
GCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCT
CAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACA
GTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTT
CTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCAT
GTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGT
GACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTA
CTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGA
CCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGT
GAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATC
GTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCT
GAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCC
AACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACG
CAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGT
TGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAA
GTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCT
CCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCC
CTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGG
TCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCT
TATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAG
CAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGA
AGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGA
AGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTG
GTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAG
AAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAG
GGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAA
ATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAG
CTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATA
CGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTA
CCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTA
TGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCC
ACGATGCGTCCGGCGTAGAGGATCGAGATCT