OR1C1 ORF clone pFN21AE0883

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Halotag ORF Clone pFN21AE0883

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Clone info.

Species

human

Clone Name

pFN21AE0883 Sequence (with vector) Restriction Map

Product ID

FHC11337

Flexi Clone PID

FXC11337

ORF Sequence

DNA sequence (942 bp)
Protein sequence (314 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB529299]

Gene

KIEE0883

Symbol

OR1C1

Alias : HSTPCR27, OR1-42, OR1.5.10, ORL211, TPCR27

Description

olfactory receptor, family 1, subfamily C, member 1

Original Clone ID

cp01283

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 942 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 314 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS41481.1 5e-79 100.0 OR1C1 CCDS10496.1 5.3e-46 60.0 OR1F1 CCDS35122.1 9.7e-42 53.4 OR1J4 CCDS11020.1 6.9e-41 53.8 OR1G1 CCDS35120.1 1.8e-40 53.1 OR1J1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000276 26 50 PR00237 GPCR IPR000276 59 80 PR00237 GPCR IPR000725 92 103 PR00245 Olfactory receptor IPR000276 104 126 PR00237 GPCR IPR000725 129 141 PR00245 Olfactory receptor IPR000725 176 192 PR00245 Olfactory receptor IPR000276 199 222 PR00237 GPCR IPR000725 236 245 PR00245 Olfactory receptor IPR000276 272 298 PR00237 GPCR IPR000725 283 294 PR00245 Olfactory receptor HMMPfam IPR000276 41 290 PF00001 GPCR ProfileScan IPR017452 41 290 PS50262 GPCR
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 27 LSVLFLCMYLATTLGNMLIIATI 49 SECONDARY 23 2 62 FLSNLAFVDICFTSTTVPQMVVN 84 SECONDARY 23 3 95 AGCLTQLFFFVSFVNMDSLLLCV 117 PRIMARY 23 4 146 AGLWLVTYLHALLHTVLIAQLSF 168 PRIMARY 23 5 198 IIFAVGGLLALTPLVCILVSYGL 220 PRIMARY 23 6 239 STCSCHLSVVVLFYGTAIAVYFS 261 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011520809 312 603232 60.0 97.1 NP_036492 312 603232 60.0 97.1 XP_011520808 322 603232 60.0 97.1 NP_001005191 312 611538 51.1 97.1 NP_002539 312 164342 47.2 97.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE0883 Download

>KIEE0883  942 bp
ATGGAAAAAAGAAATCTAACAGTTGTCAGGGAATTCGTCCTTCTGGGACTTCCTAGCTCA
GCAGAGCAGCAGCACCTCCTGTCTGTGCTCTTTCTCTGTATGTATTTAGCCACCACCTTG
GGGAACATGCTCATCATTGCGACGATTGGCTTTGACTCTCACCTCCATTCCCCTATGTAC
TTCTTCCTTAGTAACTTGGCCTTTGTTGACATCTGCTTTACGTCGACTACAGTCCCCCAA
ATGGTAGTGAATATCTTGACTGGCACCAAGACTATCTCTTTTGCAGGCTGCCTCACCCAG
CTCTTCTTCTTCGTTTCTTTTGTGAATATGGACAGCCTCCTTCTGTGTGTGATGGCATAT
GATAGATATGTGGCGATTTGCCACCCCTTACATTACACCGCCAGAATGAACCTGTGCCTT
TGTGTCCAGCTAGTGGCTGGACTGTGGCTTGTTACTTACCTCCACGCCCTCCTGCATACT
GTCCTAATAGCACAGCTGTCCTTCTGTGCCTCCAATATCATCCATCATTTCTTCTGTGAT
CTCAATCCTCTCCTGCAGCTCTCTTGCTCTGACGTCTCCTTCAATGTAATGATCATTTTT
GCAGTAGGAGGTCTATTGGCTCTCACGCCCCTTGTCTGTATCCTCGTATCTTATGGACTT
ATCTTCTCCACTGTTCTGAAGATCACCTCTACTCAGGGCAAGCAGAGAGCTGTTTCCACC
TGCAGCTGCCACCTGTCAGTGGTGGTGTTGTTTTACGGCACAGCCATCGCCGTCTATTTC
AGCCCTTCATCCCCCCATATGCCTGAGAGCGACACTCTGTCAACCATCATGTATTCAATG
GTGGCTCCGATGCTGAATCCTTTCATCTATACCCTAAGGAACAGGGATATGAAGAGGGGA
CTTCAGAAAATGCTTCTCAAGTGCACAGTCTTTCAGCAGCAA

ORF Protein

Cloned ORF protein sequence for pFN21AE0883 Download

>KIEE0883  314 aa
MEKRNLTVVREFVLLGLPSSAEQQHLLSVLFLCMYLATTLGNMLIIATIGFDSHLHSPMY
FFLSNLAFVDICFTSTTVPQMVVNILTGTKTISFAGCLTQLFFFVSFVNMDSLLLCVMAY
DRYVAICHPLHYTARMNLCLCVQLVAGLWLVTYLHALLHTVLIAQLSFCASNIIHHFFCD
LNPLLQLSCSDVSFNVMIIFAVGGLLALTPLVCILVSYGLIFSTVLKITSTQGKQRAVST
CSCHLSVVVLFYGTAIAVYFSPSSPHMPESDTLSTIMYSMVAPMLNPFIYTLRNRDMKRG
LQKMLLKCTVFQQQ

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE0883 Download

>pFN21AE0883  5647 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAAAAAAGAAATCTAACAGTTGTCAGGGAATT
CGTCCTTCTGGGACTTCCTAGCTCAGCAGAGCAGCAGCACCTCCTGTCTGTGCTCTTTCT
CTGTATGTATTTAGCCACCACCTTGGGGAACATGCTCATCATTGCGACGATTGGCTTTGA
CTCTCACCTCCATTCCCCTATGTACTTCTTCCTTAGTAACTTGGCCTTTGTTGACATCTG
CTTTACGTCGACTACAGTCCCCCAAATGGTAGTGAATATCTTGACTGGCACCAAGACTAT
CTCTTTTGCAGGCTGCCTCACCCAGCTCTTCTTCTTCGTTTCTTTTGTGAATATGGACAG
CCTCCTTCTGTGTGTGATGGCATATGATAGATATGTGGCGATTTGCCACCCCTTACATTA
CACCGCCAGAATGAACCTGTGCCTTTGTGTCCAGCTAGTGGCTGGACTGTGGCTTGTTAC
TTACCTCCACGCCCTCCTGCATACTGTCCTAATAGCACAGCTGTCCTTCTGTGCCTCCAA
TATCATCCATCATTTCTTCTGTGATCTCAATCCTCTCCTGCAGCTCTCTTGCTCTGACGT
CTCCTTCAATGTAATGATCATTTTTGCAGTAGGAGGTCTATTGGCTCTCACGCCCCTTGT
CTGTATCCTCGTATCTTATGGACTTATCTTCTCCACTGTTCTGAAGATCACCTCTACTCA
GGGCAAGCAGAGAGCTGTTTCCACCTGCAGCTGCCACCTGTCAGTGGTGGTGTTGTTTTA
CGGCACAGCCATCGCCGTCTATTTCAGCCCTTCATCCCCCCATATGCCTGAGAGCGACAC
TCTGTCAACCATCATGTATTCAATGGTGGCTCCGATGCTGAATCCTTTCATCTATACCCT
AAGGAACAGGGATATGAAGAGGGGACTTCAGAAAATGCTTCTCAAGTGCACAGTCTTTCA
GCAGCAAGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAG
GCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCA
CCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGA
TACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGT
GAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAAC
AACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTA
AGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTT
GCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTC
TGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAT
GTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATG
AGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAA
CATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCAC
CCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTAC
ATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTT
CCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCC
GGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCA
CCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCC
ATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAG
GAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAA
CCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATG
GCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAA
TTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCG
GCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATT
GCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGT
CAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAG
CATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGG
CGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAG
GCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCC
GCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAG
GACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGA
CCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTC
ATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTG
TGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGT
CCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCA
GAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACA
CTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAG
TTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCA
AGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGG
GGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAA
AAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGC
CCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAA
TGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGAT
TGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCT
GAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCC
CTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATC
GAGATCT