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SpecieshumanClone NamepFN21AB7687
Sequence (with vector) Restriction Map Product IDFHC11901Cloning SiteSgfI-PmeIGeneKIBB7687SymbolTCEA3
Alias : TFIIS, TFIIS.HDescriptiontranscription elongation factor A (SII), 3Original Clone IDcs00187
Characterization of the cloned ORF
N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand
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Length: 1044 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 348 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS44086.1 1.5e-92 100.0 TCEA3 CCDS13554.1 1.5e-31 50.6 TCEA2 CCDS13553.1 1.6e-31 51.4 TCEA2 CCDS47857.1 2.5e-31 50.9 TCEA1 CCDS47858.1 2.7e-31 54.3 TCEA1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR017923 28 80 PF08711 Transcription factor IIS IPR003618 183 297 PF07500 Transcription elongation factor S-II IPR001222 308 346 PF01096 Zinc finger HMMSmart IPR003617 7 81 SM00509 Transcription elongation factor IPR017890 185 286 SM00510 Transcription elongation factor S-IIM IPR001222 308 347 SM00440 Zinc finger HMMTigr IPR006289 5 348 TIGR01385 Transcription elongation factor ProfileScan IPR017923 5 82 PS51319 Transcription factor IIS IPR003618 187 303 PS51321 Transcription elongation factor S-II IPR001222 306 346 PS51133 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003187 348 604128 100.0 100.0 XP_006710927 351 604128 100.0 99.4 XP_011540355 364 604128 100.0 99.4 XP_016857689 487 604128 100.0 99.4 XP_016857692 450 604128 100.0 88.8 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pFN21AB7687 Download>KIBB7687 1044 bp ATGGGCCAGGAAGAGGAGCTGCTGAGGATCGCCAAAAAGCTGGAGAAGATGGTGGCCAGG AAGAACACGGAAGGGGCCCTGGACCTTCTGAAGAAGCTGCACAGCTGCCAGATGTCCATC CAGCTACTACAGACAACCAGGATTGGAGTTGCTGTTAATGGGGTCCGCAAGCACTGCTCA GACAAGGAGGTGGTGTCCTTGGCCAAAGTCCTTATCAAAAACTGGAAGCGGCTGCTAGAC TCCCCTGGACCCCCAAAAGGAGAAAAAGGAGAGGAAAGAGAAAAGGCAAAGAAGAAGGAA AAAGGGCTTGAGTGTTCAGACTGGAAGCCAGAAGCAGGCCTTTCTCCACCAAGGAAAAAA CGAGAAGACCCCAAAACCAGGAGAGACTCTGTGGACTCCAAGTCTTCTGCCTCCTCCTCT CCAAAAAGACCATCGGTGGAAAGATCAAACAGCAGCAAATCAAAAGCGGAGAGCCCCAAA ACACCTAGCAGCCCCTTGACCCCCACGTTTGCCTCTTCCATGTGTCTCCTGGCCCCCTGC TATCTCACAGGGGACTCTGTCCGGGACAAGTGTGTGGAGATGCTGTCAGCAGCCCTGAAG GCGGACGATGATTACAAGGACTATGGAGTCAACTGTGACAAGATGGCATCAGAAATCGAA GATCATATCTACCAAGAGCTCAAGAGCACGGACATGAAGTACCGGAACCGCGTGCGCAGC CGCATAAGCAACCTCAAGGACCCCAGGAACCCCGGCCTGCGGCGGAACGTGCTCAGTGGG GCCATCTCCGCAGGGCTTATAGCCAAGATGACGGCAGAGGAAATGGCCAGTGATGAACTG AGGGAGTTGAGGAATGCCATGACCCAGGAGGCCATCCGTGAGCACCAGATGGCCAAGACT GGCGGCACCACCACTGACCTCTTCCAGTGCAGCAAATGCAAGAAGAAGAACTGCACCTAT AACCAGGTGCAGACACGCAGTGCTGATGAGCCCATGACTACCTTTGTCTTATGCAATGAA TGTGGCAATCGCTGGAAGTTCTGC
Cloned ORF protein sequence for pFN21AB7687 Download>KIBB7687 348 aa MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Nucleotide Sequence (with vector) for pFN21AB7687 Download
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