OTX1 ORF clone pFN21AB7602

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB7602

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Clone info.

Species

human

Clone Name

pFN21AB7602 Sequence (with vector) Restriction Map

Product ID

FHC03934

Flexi Clone PID

FXC03934

ORF Sequence

DNA sequence (1062 bp)
Protein sequence (354 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528007]

Gene

KIBB7602

Symbol

OTX1

Description

orthodenticle homeobox 1, transcript variant 1

Original Clone ID

cs00102

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1062 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 354 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS1873.1 7.2e-63 100.0 OTX1 CCDS41960.1 4.4e-17 57.6 OTX2 CCDS9728.1 2.4e-16 56.3 OTX2 CCDS12706.1 3.6e-11 41.4 CRX The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003025 1 10 PR01255 Transcription factor Otx IPR003026 184 196 PR01256 Transcription factor Otx1 IPR003025 221 227 PR01255 Transcription factor Otx IPR003025 242 250 PR01255 Transcription factor Otx IPR003026 286 298 PR01256 Transcription factor Otx1 IPR003026 306 311 PR01256 Transcription factor Otx1 IPR003025 315 321 PR01255 Transcription factor Otx HMMPfam IPR001356 39 95 PF00046 Homeobox IPR013851 178 280 PF03529 Transcription factor Otx HMMSmart IPR001356 38 100 SM00389 Homeobox ProfileScan IPR001356 36 96 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_055377 354 600036 100.0 100.0 NP_001186699 354 600036 100.0 100.0 NP_758840 289 600037,610125,613986 57.6 100.0 NP_001257452 289 600037,610125,613986 57.6 100.0 NP_001257453 289 600037,610125,613986 57.6 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB7602 Download

>KIBB7602  1062 bp
ATGATGTCTTACCTCAAACAACCCCCATACGGCATGAACGGGCTGGGCCTGGCCGGGCCC
GCCATGGACCTCCTGCACCCATCCGTGGGCTATCCGGCCACTCCGCGGAAGCAGCGGCGG
GAGCGCACCACCTTCACGCGTTCACAGCTGGACGTGCTCGAGGCGCTCTTCGCCAAGACT
CGCTACCCTGACATCTTCATGCGGGAGGAGGTGGCGCTCAAGATCAACCTGCCGGAGTCT
AGAGTCCAGGTCTGGTTCAAGAACCGCCGCGCCAAATGCCGCCAGCAGCAGCAGAGCGGG
AGCGGAACCAAGAGCCGCCCAGCCAAGAAGAAGTCCTCTCCAGTGCGGGAGAGCTCGGGC
TCCGAAAGCAGTGGCCAATTCACGCCGCCAGCTGTGTCCAGCTCTGCCTCGTCCTCTAGC
TCGGCGTCCAGCTCTTCCGCCAACCCAGCGGCTGCAGCGGCTGCGGGACTAGGTGGGAAC
CCGGTGGCGGCCGCGTCGTCGCTGAGTACACCAGCTGCCTCATCTATCTGGAGCCCGGCC
TCCATCTCGCCAGGCTCAGCGCCCGCGTCCGTGTCGGTGCCGGAGCCATTGGCCGCGCCT
AGCAACACCTCGTGTATGCAGCGCTCCGTAGCTGCAGGCGCCGCCACCGCAGCAGCCTCT
TATCCCATGTCCTACGGCCAGGGCGGCAGCTACGGCCAAGGCTACCCTACGCCCTCCTCT
TCCTACTTTGGCGGCGTGGACTGCAGCTCATACCTAGCGCCCATGCACTCACATCACCAC
CCGCACCAGCTCAGCCCCATGGCACCCTCCTCCATGGCGGGCCACCATCATCACCACCCA
CATGCGCACCACCCGTTGAGCCAGTCCTCAGGCCACCACCACCACCATCACCACCACCAC
CACCAAGGCTACGGTGGCTCTGGGCTTGCCTTCAACTCTGCCGACTGCTTGGATTACAAG
GAGCCTGGCGCCGCTGCTGCTTCCTCCGCCTGGAAACTCAACTTCAACTCCCCCGACTGT
CTGGACTATAAGGACCAAGCCTCATGGCGGTTCCAGGTCTTG

ORF Protein

Cloned ORF protein sequence for pFN21AB7602 Download

>KIBB7602  354 aa
MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB7602 Download

>pFN21AB7602  5767 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGATGTCTTACCTCAAACAACCCCCATACGGCAT
GAACGGGCTGGGCCTGGCCGGGCCCGCCATGGACCTCCTGCACCCATCCGTGGGCTATCC
GGCCACTCCGCGGAAGCAGCGGCGGGAGCGCACCACCTTCACGCGTTCACAGCTGGACGT
GCTCGAGGCGCTCTTCGCCAAGACTCGCTACCCTGACATCTTCATGCGGGAGGAGGTGGC
GCTCAAGATCAACCTGCCGGAGTCTAGAGTCCAGGTCTGGTTCAAGAACCGCCGCGCCAA
ATGCCGCCAGCAGCAGCAGAGCGGGAGCGGAACCAAGAGCCGCCCAGCCAAGAAGAAGTC
CTCTCCAGTGCGGGAGAGCTCGGGCTCCGAAAGCAGTGGCCAATTCACGCCGCCAGCTGT
GTCCAGCTCTGCCTCGTCCTCTAGCTCGGCGTCCAGCTCTTCCGCCAACCCAGCGGCTGC
AGCGGCTGCGGGACTAGGTGGGAACCCGGTGGCGGCCGCGTCGTCGCTGAGTACACCAGC
TGCCTCATCTATCTGGAGCCCGGCCTCCATCTCGCCAGGCTCAGCGCCCGCGTCCGTGTC
GGTGCCGGAGCCATTGGCCGCGCCTAGCAACACCTCGTGTATGCAGCGCTCCGTAGCTGC
AGGCGCCGCCACCGCAGCAGCCTCTTATCCCATGTCCTACGGCCAGGGCGGCAGCTACGG
CCAAGGCTACCCTACGCCCTCCTCTTCCTACTTTGGCGGCGTGGACTGCAGCTCATACCT
AGCGCCCATGCACTCACATCACCACCCGCACCAGCTCAGCCCCATGGCACCCTCCTCCAT
GGCGGGCCACCATCATCACCACCCACATGCGCACCACCCGTTGAGCCAGTCCTCAGGCCA
CCACCACCACCATCACCACCACCACCACCAAGGCTACGGTGGCTCTGGGCTTGCCTTCAA
CTCTGCCGACTGCTTGGATTACAAGGAGCCTGGCGCCGCTGCTGCTTCCTCCGCCTGGAA
ACTCAACTTCAACTCCCCCGACTGTCTGGACTATAAGGACCAAGCCTCATGGCGGTTCCA
GGTCTTGGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAG
GCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCA
CCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGA
TACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGT
GAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAAC
AACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTA
AGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTT
GCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTC
TGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAT
GTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATG
AGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAA
CATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCAC
CCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTAC
ATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTT
CCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCC
GGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCA
CCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCC
ATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAG
GAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAA
CCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATG
GCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAA
TTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCG
GCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATT
GCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGT
CAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAG
CATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGG
CGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAG
GCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCC
GCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAG
GACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGA
CCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTC
ATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTG
TGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGT
CCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCA
GAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACA
CTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAG
TTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCA
AGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGG
GGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAA
AAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGC
CCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAA
TGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGAT
TGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCT
GAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCC
CTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATC
GAGATCT