SNX2 ORF clone pFN21AB5977

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB5977

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Clone info.

Species

human

Clone Name

pFN21AB5977 Sequence (with vector) Restriction Map

Product ID

FHC06931

Flexi Clone PID

FXC06931

ORF Sequence

DNA sequence (1557 bp)
Protein sequence (519 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464236]

Gene

KIBB5977

Symbol

SNX2

Alias : TRG-9

Description

sorting nexin 2, transcript variant 1

Original Clone ID

cs00677

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1557 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 519 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS34217.1 4.8e-149 100.0 SNX2 CCDS64234.1 5.8e-114 100.0 SNX2 CCDS32266.1 3.3e-82 60.1 SNX1 CCDS58371.1 9e-78 59.3 SNX1 CCDS32268.1 2.6e-76 60.2 SNX1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR005329 2 134 PF03700 Sorting nexin IPR001683 143 265 PF00787 Phox homologous domain IPR015404 282 514 PF09325 Vps5 C-terminal HMMSmart IPR001683 138 265 SM00312 Phox homologous domain ProfileScan IPR001683 140 269 PS50195 Phox homologous domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003091 519 605929 100.0 100.0 NP_003090 522 601272 60.1 99.8 NP_001229862 557 601272 59.3 96.7 NP_683758 457 601272 60.2 93.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB5977 Download

>KIBB5977  1557 bp
ATGGCGGCCGAGAGGGAACCTCCTCCGCTGGGGGACGGGAAGCCCACCGACTTTGAGGAT
CTGGAGGACGGAGAGGACCTGTTCACCAGCACTGTCTCCACCCTAGAGTCAAGTCCATCA
TCTCCAGAACCAGCTAGTCTTCCTGCAGAAGATATTAGTGCAAACTCCAATGGCCCAAAA
CCCACAGAAGTTGTATTAGATGATGACAGAGAAGATCTTTTTGCAGAAGCCACAGAAGAA
GTTTCTTTGGACAGCCCTGAAAGGGAACCTATCCTATCCTCGGAACCTTCTCCTGCAGTC
ACACCTGTCACTCCTACTACACTCATTGCTCCTAGAATTGAATCAAAGAGTATGTCTGCT
CCCGTGATCTTTGATAGATCCAGGGAAGAGATTGAAGAAGAAGCAAATGGAGACATTTTT
GACATAGAAATTGGTGTATCAGATCCAGAAAAAGTTGGTGATGGCATGAATGCCTATATG
GCATATAGAGTAACAACAAAGACATCTCTTTCCATGTTCAGTAAGAGTGAATTTTCAGTG
AAAAGAAGATTCAGCGACTTTCTTGGTTTGCACAGCAAATTAGCAAGCAAATATTTACAT
GTTGGTTATATTGTGCCACCAGCTCCAGAAAAGAGTATAGTAGGGATGACCAAGGTCAAA
GTGGGTAAAGAAGACTCATCATCCACTGAGTTTGTAGAAAAACGGAGAGCAGCTCTTGAA
AGGTATCTTCAAAGAACAGTAAAACATCCAACTTTACTACAGGATCCTGATTTAAGGCAG
TTCTTGGAAAGTTCAGAGCTGCCTAGAGCAGTTAATACACAGGCTCTGAGTGGAGCAGGA
ATATTGAGGATGGTGAACAAGGCTGCCGACGCTGTCAACAAAATGACAATCAAGATGAAT
GAATCGGATGCATGGTTTGAAGAAAAGCAGCAGCAATTTGAGAATCTGGATCAGCAACTT
AGGAAACTTCATGTCAGTGTTGAAGCCTTGGTCTGTCATAGAAAAGAACTTTCAGCCAAC
ACAGCTGCCTTTGCTAAAAGTGCTGCCATGTTAGGTAATTCTGAGGATCATACTGCTTTA
TCTAGAGCTTTGTCTCAGCTTGCAGAGGTTGAGGAGAAGATAGACCAGTTACATCAAGAA
CAAGCTTTTGCTGACTTTTATATGTTTTCAGAACTACTTAGTGACTACATTCGTCTTATT
GCTGCAGTGAAAGGTGTGTTTGACCATCGAATGAAGTGCTGGCAGAAATGGGAAGATGCT
CAAATTACTTTGCTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCA
GATAAAATACAGCAAGCTAAAAATGAAATAAGAGAGTGGGAGGCGAAAGTGCAACAAGGG
GAAAGAGATTTTGAACAGATATCTAAAACGATTCGAAAAGAAGTGGGAAGATTTGAGAAA
GAACGAGTGAAGGATTTTAAAACCGTTATCATCAAGTACTTAGAATCACTAGTTCAAACA
CAACAACAGCTGATAAAATACTGGGAAGCATTCCTACCTGAAGCCAAAGCCATTGCC

ORF Protein

Cloned ORF protein sequence for pFN21AB5977 Download

>KIBB5977  519 aa
MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGPK
PTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSA
PVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSV
KRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALE
RYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN
ESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL
SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDA
QITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEK
ERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB5977 Download

>pFN21AB5977  6262 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGCGGCCGAGAGGGAACCTCCTCCGCTGGGGGA
CGGGAAGCCCACCGACTTTGAGGATCTGGAGGACGGAGAGGACCTGTTCACCAGCACTGT
CTCCACCCTAGAGTCAAGTCCATCATCTCCAGAACCAGCTAGTCTTCCTGCAGAAGATAT
TAGTGCAAACTCCAATGGCCCAAAACCCACAGAAGTTGTATTAGATGATGACAGAGAAGA
TCTTTTTGCAGAAGCCACAGAAGAAGTTTCTTTGGACAGCCCTGAAAGGGAACCTATCCT
ATCCTCGGAACCTTCTCCTGCAGTCACACCTGTCACTCCTACTACACTCATTGCTCCTAG
AATTGAATCAAAGAGTATGTCTGCTCCCGTGATCTTTGATAGATCCAGGGAAGAGATTGA
AGAAGAAGCAAATGGAGACATTTTTGACATAGAAATTGGTGTATCAGATCCAGAAAAAGT
TGGTGATGGCATGAATGCCTATATGGCATATAGAGTAACAACAAAGACATCTCTTTCCAT
GTTCAGTAAGAGTGAATTTTCAGTGAAAAGAAGATTCAGCGACTTTCTTGGTTTGCACAG
CAAATTAGCAAGCAAATATTTACATGTTGGTTATATTGTGCCACCAGCTCCAGAAAAGAG
TATAGTAGGGATGACCAAGGTCAAAGTGGGTAAAGAAGACTCATCATCCACTGAGTTTGT
AGAAAAACGGAGAGCAGCTCTTGAAAGGTATCTTCAAAGAACAGTAAAACATCCAACTTT
ACTACAGGATCCTGATTTAAGGCAGTTCTTGGAAAGTTCAGAGCTGCCTAGAGCAGTTAA
TACACAGGCTCTGAGTGGAGCAGGAATATTGAGGATGGTGAACAAGGCTGCCGACGCTGT
CAACAAAATGACAATCAAGATGAATGAATCGGATGCATGGTTTGAAGAAAAGCAGCAGCA
ATTTGAGAATCTGGATCAGCAACTTAGGAAACTTCATGTCAGTGTTGAAGCCTTGGTCTG
TCATAGAAAAGAACTTTCAGCCAACACAGCTGCCTTTGCTAAAAGTGCTGCCATGTTAGG
TAATTCTGAGGATCATACTGCTTTATCTAGAGCTTTGTCTCAGCTTGCAGAGGTTGAGGA
GAAGATAGACCAGTTACATCAAGAACAAGCTTTTGCTGACTTTTATATGTTTTCAGAACT
ACTTAGTGACTACATTCGTCTTATTGCTGCAGTGAAAGGTGTGTTTGACCATCGAATGAA
GTGCTGGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAACGTGAAGCTGAAGC
AAAAATGATGGTTGCTAACAAACCAGATAAAATACAGCAAGCTAAAAATGAAATAAGAGA
GTGGGAGGCGAAAGTGCAACAAGGGGAAAGAGATTTTGAACAGATATCTAAAACGATTCG
AAAAGAAGTGGGAAGATTTGAGAAAGAACGAGTGAAGGATTTTAAAACCGTTATCATCAA
GTACTTAGAATCACTAGTTCAAACACAACAACAGCTGATAAAATACTGGGAAGCATTCCT
ACCTGAAGCCAAAGCCATTGCCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCT
AGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTG
AGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGA
GCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAA
AAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGC
AATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATG
TGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGG
ATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGG
GGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGC
ACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAAT
ATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAG
AGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTT
CCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGT
GCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGC
CCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTA
TCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGAC
TTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAA
TTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACT
ATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGC
CTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACG
ATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTA
GCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTG
CGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGG
TCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATC
TACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGT
GCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTAT
CAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGA
ACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGT
TTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGT
GGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGC
GCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAA
GCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCT
CCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTA
ACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTG
GTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGC
CTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTA
CCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTG
GTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTT
TGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGG
TCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAA
CGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGG
ATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAA
TTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGC
TGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATC
CACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGT
CCGGCGTAGAGGATCGAGATCT