PKNOX1 ORF clone pFN21AB4325

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB4325

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Clone info.

Species

human

Clone Name

pFN21AB4325 Sequence (with vector) Restriction Map

Product ID

FHC01386

Flexi Clone PID

FXC01386

ORF Sequence

DNA sequence (1308 bp)
Protein sequence (436 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384928]

Gene

KIBB4325

Symbol

PKNOX1

Alias : PREP1, pkonx1c

Description

PBX/knotted 1 homeobox 1, transcript variant 1

Original Clone ID

fh18523

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1308 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 436 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS13692.1 6.7e-149 100.0 PKNOX1 CCDS68211.1 4.7e-106 100.0 PKNOX1 CCDS41730.1 4.1e-37 58.1 PKNOX2 CCDS42014.1 7.4e-19 41.7 MEIS2 CCDS45218.1 7.6e-19 41.7 MEIS2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001356 278 316 PF00046 Homeobox HMMSmart IPR001356 259 324 SM00389 Homeobox ProfileScan IPR001356 257 320 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004562 436 602100 100.0 100.0 NP_001307623 435 602100 99.8 100.0 XP_016873599 472 613066 58.1 100.0 XP_011541247 472 613066 58.1 100.0 NP_071345 472 613066 58.1 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB4325 Download

>KIBB4325  1308 bp
ATGATGGCTACACAGACATTAAGTATAGACAGCTATCAAGATGGGCAACAGATGCAAGTA
GTAACAGAGTTAAAGACAGAACAAGATCCAAACTGCTCTGAACCCGATGCAGAAGGAGTG
AGCCCTCCCCCTGTGGAGTCTCAGACCCCGATGGATGTGGACAAGCAGGCCATTTATAGG
CATCCACTATTTCCATTATTAGCTTTGTTGTTTGAAAAATGTGAACAATCTACACAGGGC
TCTGAAGGCACAACTTCTGCCAGTTTTGATGTAGACATCGAAAATTTTGTAAGAAAGCAA
GAGAAGGAAGGGAAACCTTTCTTTTGTGAAGATCCAGAAACTGATAATTTAATGGTAAAA
GCAATCCAGGTTTTGCGCATTCATCTTCTTGAGCTGGAAAAGGTTAACGAACTCTGCAAA
GATTTCTGCAGTCGATACATTGCTTGTCTGAAAACAAAAATGAACAGTGAAACTCTGTTG
AGTGGAGAGCCTGGAAGCCCGTACTCACCAGTGCAGTCCCAGCAGATTCAAAGTGCCATC
ACAGGCACCATCAGCCCTCAGGGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAGGGAAAC
GTAGCCATGGCGACGGTGGCAGGTGGCACAGTGTATCAGCCTGTCACGGTCGTCACTCCC
CAAGGCCAAGTGGTCACACAGACATTGTCGCCTGGGACAATTAGGATCCAGAACTCCCAG
CTTCAGTTACAGTTAAACCAAGATCTCAGCATCTTGCATCAAGATGATGGTTCATCTAAG
AACAAGAGGGGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTGGCTCTTCCAG
CACATCGGGCATCCCTACCCAACAGAGGATGAGAAAAAACAGATTGCTGCTCAGACAAAT
TTGACACTACTCCAAGTCAACAACTGGTTCATCAATGCCAGAAGACGAATTCTTCAGCCA
ATGTTGGATTCAAGTTGTTCAGAGACCCCCAAAACAAAGAAAAAAACTGCTCAGAACCGG
CCAGTTCAGAGGTTTTGGCCTGATTCTATTGCATCAGGAGTCGCACAGCCACCGCCGAGC
GAGCTCACCATGTCGGAAGGAGCTGTTGTCACCATCACCACGCCCGTGAACATGAACGTG
GACAGCCTTCAGTCTCTGTCCTCGGACGGGGCCACCCTGGCGGTGCAGCAGGTCATGATG
GCAGGGCAGAGCGAGGACGAGTCTGTGGACAGCACAGAGGAGGATGCGGGTGCCCTGGCC
CCTGCCCACATCAGCGGGCTGGTCTTGGAGAACAGTGACTCCCTGCAG

ORF Protein

Cloned ORF protein sequence for pFN21AB4325 Download

>KIBB4325  436 aa
MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYR
HPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVK
AIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAI
TGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQ
LQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN
LTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPS
ELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEEDAGALA
PAHISGLVLENSDSLQ

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB4325 Download

>pFN21AB4325  6013 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGATGGCTACACAGACATTAAGTATAGACAGCTA
TCAAGATGGGCAACAGATGCAAGTAGTAACAGAGTTAAAGACAGAACAAGATCCAAACTG
CTCTGAACCCGATGCAGAAGGAGTGAGCCCTCCCCCTGTGGAGTCTCAGACCCCGATGGA
TGTGGACAAGCAGGCCATTTATAGGCATCCACTATTTCCATTATTAGCTTTGTTGTTTGA
AAAATGTGAACAATCTACACAGGGCTCTGAAGGCACAACTTCTGCCAGTTTTGATGTAGA
CATCGAAAATTTTGTAAGAAAGCAAGAGAAGGAAGGGAAACCTTTCTTTTGTGAAGATCC
AGAAACTGATAATTTAATGGTAAAAGCAATCCAGGTTTTGCGCATTCATCTTCTTGAGCT
GGAAAAGGTTAACGAACTCTGCAAAGATTTCTGCAGTCGATACATTGCTTGTCTGAAAAC
AAAAATGAACAGTGAAACTCTGTTGAGTGGAGAGCCTGGAAGCCCGTACTCACCAGTGCA
GTCCCAGCAGATTCAAAGTGCCATCACAGGCACCATCAGCCCTCAGGGAATTGTGGTGCC
GGCGTCCGCGCTGCAGCAGGGAAACGTAGCCATGGCGACGGTGGCAGGTGGCACAGTGTA
TCAGCCTGTCACGGTCGTCACTCCCCAAGGCCAAGTGGTCACACAGACATTGTCGCCTGG
GACAATTAGGATCCAGAACTCCCAGCTTCAGTTACAGTTAAACCAAGATCTCAGCATCTT
GCATCAAGATGATGGTTCATCTAAGAACAAGAGGGGCGTCCTGCCAAAGCATGCCACGAA
CGTGATGCGGTCCTGGCTCTTCCAGCACATCGGGCATCCCTACCCAACAGAGGATGAGAA
AAAACAGATTGCTGCTCAGACAAATTTGACACTACTCCAAGTCAACAACTGGTTCATCAA
TGCCAGAAGACGAATTCTTCAGCCAATGTTGGATTCAAGTTGTTCAGAGACCCCCAAAAC
AAAGAAAAAAACTGCTCAGAACCGGCCAGTTCAGAGGTTTTGGCCTGATTCTATTGCATC
AGGAGTCGCACAGCCACCGCCGAGCGAGCTCACCATGTCGGAAGGAGCTGTTGTCACCAT
CACCACGCCCGTGAACATGAACGTGGACAGCCTTCAGTCTCTGTCCTCGGACGGGGCCAC
CCTGGCGGTGCAGCAGGTCATGATGGCAGGGCAGAGCGAGGACGAGTCTGTGGACAGCAC
AGAGGAGGATGCGGGTGCCCTGGCCCCTGCCCACATCAGCGGGCTGGTCTTGGAGAACAG
TGACTCCCTGCAGGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGAC
CTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTG
CTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATG
ATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTT
ATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAA
GTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTT
TTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTT
GCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCAC
CGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGG
GGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG
CTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGT
ATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTT
GCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTG
GGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAA
CGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATT
GACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAG
TACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGT
GCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGA
CCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGT
TGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTA
GCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGG
CAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCC
CTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGT
ATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACG
GGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTG
ATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACT
CAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAG
CAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATA
GGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACC
CGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTG
TTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGC
TTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGG
GCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTC
TTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGA
TTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACG
GCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAA
AAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTG
TTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTT
CTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGAT
TATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTG
GATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGG
GGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGG
CGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGAT
CGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTG
TCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAG
AGGATCGAGATCT