-
SpecieshumanProduct IDFXC11387Cloning SiteSgfI-PmeIGeneKIEE0738SymbolAVPR1B
Alias : AVPR3, V1bR, VPR3Descriptionarginine vasopressin receptor 1BOriginal Clone IDcs02238
Length: 1272 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 424 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS73015.1 4.2e-128 100.0 AVPR1B CCDS8965.1 1.4e-52 51.4 AVPR1A CCDS2570.1 3.1e-32 52.3 OXTR CCDS55539.1 1.2e-25 44.3 AVPR2 CCDS14735.1 1.4e-25 44.4 AVPR2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR000628 5 27 PR00897 Vasopressin V1B receptor IPR001817 29 41 PR00896 Vasopressin receptor IPR000276 36 60 PR00237 GPCR IPR001817 65 76 PR00896 Vasopressin receptor IPR000276 69 90 PR00237 GPCR IPR001817 90 104 PR00896 Vasopressin receptor IPR000276 114 136 PR00237 GPCR IPR000628 141 157 PR00897 Vasopressin V1B receptor IPR000276 149 170 PR00237 GPCR IPR000628 173 185 PR00897 Vasopressin V1B receptor IPR001817 185 199 PR00896 Vasopressin receptor IPR000276 200 223 PR00237 GPCR IPR001817 218 230 PR00896 Vasopressin receptor IPR000628 234 253 PR00897 Vasopressin V1B receptor IPR000628 257 272 PR00897 Vasopressin V1B receptor IPR001817 272 286 PR00896 Vasopressin receptor IPR000276 279 303 PR00237 GPCR IPR001817 300 307 PR00896 Vasopressin receptor IPR000628 307 320 PR00897 Vasopressin V1B receptor IPR000276 320 346 PR00237 GPCR IPR001817 325 333 PR00896 Vasopressin receptor IPR000628 365 382 PR00897 Vasopressin V1B receptor IPR000628 388 403 PR00897 Vasopressin V1B receptor IPR000628 408 423 PR00897 Vasopressin V1B receptor HMMPfam IPR000276 51 338 PF00001 GPCR ProfileScan IPR017452 51 338 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 37 EIGVLATVLVLATGGNLAVLLTL 59 PRIMARY 23 2 72 FVLHLALTDLAVALFQVLPQLLW 94 SECONDARY 23 3 106 LCRAVKYLQVLSMFASTYMLLAM 128 SECONDARY 23 4 151 YLLIAAPWLLAAIFSLPQVFIFS 173 PRIMARY 23 5 203 TTLAIFVLPVTMLTACYSLICHE 225 PRIMARY 23 6 278 RTVKMTFVIVLAYIACWAPFFSV 300 PRIMARY 23 7 318 VAFTISMLLGNLNSCCNPWIYMG 340 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_000698 424 600264 100.0 100.0 NP_000697 418 600821 51.4 88.7 NP_000907 389 167055 52.3 87.5 XP_011532064 389 167055 52.3 87.5 NP_000045 371 300538,300539,304800 44.4 83.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0738 Download>KIEE0738 1272 bp ATGGATTCTGGGCCTCTGTGGGATGCCAACCCCACCCCTCGGGGCACCCTCTCTGCCCCC AATGCCACAACACCCTGGCTGGGCCGGGATGAGGAGCTGGCCAAGGTGGAGATCGGAGTC CTGGCCACTGTCCTGGTGCTGGCGACCGGGGGCAACCTGGCTGTGCTGCTGACCCTGGGC CAGCTGGGCCGCAAGCGCTCCCGCATGCACCTGTTCGTGCTGCACTTAGCCCTGACAGAC CTGGCCGTGGCGCTCTTCCAGGTGCTGCCACAGCTGCTGTGGGACATCACCTACCGCTTC CAGGGCCCCGACCTCTTGTGCAGGGCCGTCAAGTACCTGCAGGTGCTCAGCATGTTTGCC TCCACCTACATGCTGCTGGCCATGACGCTGGACCGCTACCTGGCTGTCTGTCACCCCCTG CGCAGCCTCCAGCAGCCAGGCCAGTCCACCTACCTGCTCATCGCTGCTCCCTGGCTGCTG GCCGCCATCTTCAGCCTCCCTCAAGTCTTCATTTTTTCCCTGCGGGAGGTGATCCAGGGC TCAGGGGTGCTGGACTGCTGGGCAGACTTCGGCTTCCCTTGGGGGCCACGGGCCTACCTC ACCTGGACCACCCTGGCTATCTTCGTTCTGCCGGTGACCATGCTCACGGCCTGCTACAGC CTCATCTGCCATGAGATCTGTAAAAACCTAAAAGTCAAGACACAGGCCTGGCGGGTGGGA GGAGGGGGCTGGAGGACTTGGGACAGGCCCTCACCTTCCACCTTAGCTGCCACCACTCGG GGGCTGCCATCTCGGGTCAGCAGCATCAACACCATCTCACGGGCCAAGATCCGAACAGTG AAGATGACCTTTGTCATCGTGCTGGCCTACATCGCTTGCTGGGCTCCCTTCTTCAGTGTC CAGATGTGGTCCGTGTGGGACAAGAATGCCCCTGATGAAGATTCCACCAATGTGGCTTTC ACCATCTCTATGCTTTTGGGCAACCTCAACAGCTGCTGCAACCCCTGGATCTACATGGGC TTCAACAGCCACCTGTTACCGCGGCCCCTGCGTCACCTTGCCTGCTGTGGGGGTCCCCAG CCCAGGATGCGCCGGCGGCTCTCCGACGGCAGCCTCTCGAGCCGCCACACCACGCTGCTG ACCCGCTCCAGCTGCCCGGCCACCCTCAGCCTCAGCCTCAGCCTAACCCTCAGTGGGAGG CCCAGGCCTGAAGAGTCACCAAGGGACTTGGAGCTGGCAGATGGGGAAGGCACCGCTGAG ACCATCATCTTT
Cloned ORF protein sequence for pF1KE0738 Download>KIEE0738 424 aa MDSGPLWDANPTPRGTLSAPNATTPWLGRDEELAKVEIGVLATVLVLATGGNLAVLLTLG QLGRKRSRMHLFVLHLALTDLAVALFQVLPQLLWDITYRFQGPDLLCRAVKYLQVLSMFA STYMLLAMTLDRYLAVCHPLRSLQQPGQSTYLLIAAPWLLAAIFSLPQVFIFSLREVIQG SGVLDCWADFGFPWGPRAYLTWTTLAIFVLPVTMLTACYSLICHEICKNLKVKTQAWRVG GGGWRTWDRPSPSTLAATTRGLPSRVSSINTISRAKIRTVKMTFVIVLAYIACWAPFFSV QMWSVWDKNAPDEDSTNVAFTISMLLGNLNSCCNPWIYMGFNSHLLPRPLRHLACCGGPQ PRMRRRLSDGSLSSRHTTLLTRSSCPATLSLSLSLTLSGRPRPEESPRDLELADGEGTAE TIIF
Nucleotide Sequence (with vector) for pF1KE0738 Download>pF1KE0738 4385 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGATTCTGGG CCTCTGTGGGATGCCAACCCCACCCCTCGGGGCACCCTCTCTGCCCCCAATGCCACAACA CCCTGGCTGGGCCGGGATGAGGAGCTGGCCAAGGTGGAGATCGGAGTCCTGGCCACTGTC CTGGTGCTGGCGACCGGGGGCAACCTGGCTGTGCTGCTGACCCTGGGCCAGCTGGGCCGC AAGCGCTCCCGCATGCACCTGTTCGTGCTGCACTTAGCCCTGACAGACCTGGCCGTGGCG CTCTTCCAGGTGCTGCCACAGCTGCTGTGGGACATCACCTACCGCTTCCAGGGCCCCGAC CTCTTGTGCAGGGCCGTCAAGTACCTGCAGGTGCTCAGCATGTTTGCCTCCACCTACATG CTGCTGGCCATGACGCTGGACCGCTACCTGGCTGTCTGTCACCCCCTGCGCAGCCTCCAG CAGCCAGGCCAGTCCACCTACCTGCTCATCGCTGCTCCCTGGCTGCTGGCCGCCATCTTC AGCCTCCCTCAAGTCTTCATTTTTTCCCTGCGGGAGGTGATCCAGGGCTCAGGGGTGCTG GACTGCTGGGCAGACTTCGGCTTCCCTTGGGGGCCACGGGCCTACCTCACCTGGACCACC CTGGCTATCTTCGTTCTGCCGGTGACCATGCTCACGGCCTGCTACAGCCTCATCTGCCAT GAGATCTGTAAAAACCTAAAAGTCAAGACACAGGCCTGGCGGGTGGGAGGAGGGGGCTGG AGGACTTGGGACAGGCCCTCACCTTCCACCTTAGCTGCCACCACTCGGGGGCTGCCATCT CGGGTCAGCAGCATCAACACCATCTCACGGGCCAAGATCCGAACAGTGAAGATGACCTTT GTCATCGTGCTGGCCTACATCGCTTGCTGGGCTCCCTTCTTCAGTGTCCAGATGTGGTCC GTGTGGGACAAGAATGCCCCTGATGAAGATTCCACCAATGTGGCTTTCACCATCTCTATG CTTTTGGGCAACCTCAACAGCTGCTGCAACCCCTGGATCTACATGGGCTTCAACAGCCAC CTGTTACCGCGGCCCCTGCGTCACCTTGCCTGCTGTGGGGGTCCCCAGCCCAGGATGCGC CGGCGGCTCTCCGACGGCAGCCTCTCGAGCCGCCACACCACGCTGCTGACCCGCTCCAGC TGCCCGGCCACCCTCAGCCTCAGCCTCAGCCTAACCCTCAGTGGGAGGCCCAGGCCTGAA GAGTCACCAAGGGACTTGGAGCTGGCAGATGGGGAAGGCACCGCTGAGACCATCATCTTT GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACC AAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATC AGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAA AAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAA TCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCC CCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTC CGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAG TTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGA CCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATC GCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTAC AGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTG CGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACA AACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAA AGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAA CTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTT ATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATG AAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCAT AGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGT TGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAA TTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCA GTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGAT TAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGT GGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGT GGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGT CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA CAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG GACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC TTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG CTCAT
more Linker info
