SNX2 ORF clone pF1KB5977

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Flexi ORF Clone pF1KB5977

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Clone info.

Species

human

Clone Name

pF1KB5977 Sequence (with vector) Restriction Map

Product ID

FXC06931

HaloTag Clone PID

FHC06931

ORF Sequence

DNA sequence (1557 bp)
Protein sequence (519 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464236]

Gene

KIBB5977

Symbol

SNX2

Alias : TRG-9

Description

sorting nexin 2, transcript variant 1

Original Clone ID

cs00677

Features of the cloned ORF sequence

Description

Length: 1557 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 519 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS34217.1 4.8e-149 100.0 SNX2 CCDS64234.1 5.8e-114 100.0 SNX2 CCDS32266.1 3.3e-82 60.1 SNX1 CCDS58371.1 9e-78 59.3 SNX1 CCDS32268.1 2.6e-76 60.2 SNX1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR005329 2 134 PF03700 Sorting nexin IPR001683 143 265 PF00787 Phox homologous domain IPR015404 282 514 PF09325 Vps5 C-terminal HMMSmart IPR001683 138 265 SM00312 Phox homologous domain ProfileScan IPR001683 140 269 PS50195 Phox homologous domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003091 519 605929 100.0 100.0 NP_003090 522 601272 60.1 99.8 NP_001229862 557 601272 59.3 96.7 NP_683758 457 601272 60.2 93.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5977 Download

>KIBB5977  1557 bp
ATGGCGGCCGAGAGGGAACCTCCTCCGCTGGGGGACGGGAAGCCCACCGACTTTGAGGAT
CTGGAGGACGGAGAGGACCTGTTCACCAGCACTGTCTCCACCCTAGAGTCAAGTCCATCA
TCTCCAGAACCAGCTAGTCTTCCTGCAGAAGATATTAGTGCAAACTCCAATGGCCCAAAA
CCCACAGAAGTTGTATTAGATGATGACAGAGAAGATCTTTTTGCAGAAGCCACAGAAGAA
GTTTCTTTGGACAGCCCTGAAAGGGAACCTATCCTATCCTCGGAACCTTCTCCTGCAGTC
ACACCTGTCACTCCTACTACACTCATTGCTCCTAGAATTGAATCAAAGAGTATGTCTGCT
CCCGTGATCTTTGATAGATCCAGGGAAGAGATTGAAGAAGAAGCAAATGGAGACATTTTT
GACATAGAAATTGGTGTATCAGATCCAGAAAAAGTTGGTGATGGCATGAATGCCTATATG
GCATATAGAGTAACAACAAAGACATCTCTTTCCATGTTCAGTAAGAGTGAATTTTCAGTG
AAAAGAAGATTCAGCGACTTTCTTGGTTTGCACAGCAAATTAGCAAGCAAATATTTACAT
GTTGGTTATATTGTGCCACCAGCTCCAGAAAAGAGTATAGTAGGGATGACCAAGGTCAAA
GTGGGTAAAGAAGACTCATCATCCACTGAGTTTGTAGAAAAACGGAGAGCAGCTCTTGAA
AGGTATCTTCAAAGAACAGTAAAACATCCAACTTTACTACAGGATCCTGATTTAAGGCAG
TTCTTGGAAAGTTCAGAGCTGCCTAGAGCAGTTAATACACAGGCTCTGAGTGGAGCAGGA
ATATTGAGGATGGTGAACAAGGCTGCCGACGCTGTCAACAAAATGACAATCAAGATGAAT
GAATCGGATGCATGGTTTGAAGAAAAGCAGCAGCAATTTGAGAATCTGGATCAGCAACTT
AGGAAACTTCATGTCAGTGTTGAAGCCTTGGTCTGTCATAGAAAAGAACTTTCAGCCAAC
ACAGCTGCCTTTGCTAAAAGTGCTGCCATGTTAGGTAATTCTGAGGATCATACTGCTTTA
TCTAGAGCTTTGTCTCAGCTTGCAGAGGTTGAGGAGAAGATAGACCAGTTACATCAAGAA
CAAGCTTTTGCTGACTTTTATATGTTTTCAGAACTACTTAGTGACTACATTCGTCTTATT
GCTGCAGTGAAAGGTGTGTTTGACCATCGAATGAAGTGCTGGCAGAAATGGGAAGATGCT
CAAATTACTTTGCTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCA
GATAAAATACAGCAAGCTAAAAATGAAATAAGAGAGTGGGAGGCGAAAGTGCAACAAGGG
GAAAGAGATTTTGAACAGATATCTAAAACGATTCGAAAAGAAGTGGGAAGATTTGAGAAA
GAACGAGTGAAGGATTTTAAAACCGTTATCATCAAGTACTTAGAATCACTAGTTCAAACA
CAACAACAGCTGATAAAATACTGGGAAGCATTCCTACCTGAAGCCAAAGCCATTGCC

ORF Protein

Cloned ORF protein sequence for pF1KB5977 Download

>KIBB5977  519 aa
MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGPK
PTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSA
PVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSV
KRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALE
RYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN
ESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL
SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDA
QITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEK
ERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5977 Download

>pF1KB5977  4670 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGGCCGAG
AGGGAACCTCCTCCGCTGGGGGACGGGAAGCCCACCGACTTTGAGGATCTGGAGGACGGA
GAGGACCTGTTCACCAGCACTGTCTCCACCCTAGAGTCAAGTCCATCATCTCCAGAACCA
GCTAGTCTTCCTGCAGAAGATATTAGTGCAAACTCCAATGGCCCAAAACCCACAGAAGTT
GTATTAGATGATGACAGAGAAGATCTTTTTGCAGAAGCCACAGAAGAAGTTTCTTTGGAC
AGCCCTGAAAGGGAACCTATCCTATCCTCGGAACCTTCTCCTGCAGTCACACCTGTCACT
CCTACTACACTCATTGCTCCTAGAATTGAATCAAAGAGTATGTCTGCTCCCGTGATCTTT
GATAGATCCAGGGAAGAGATTGAAGAAGAAGCAAATGGAGACATTTTTGACATAGAAATT
GGTGTATCAGATCCAGAAAAAGTTGGTGATGGCATGAATGCCTATATGGCATATAGAGTA
ACAACAAAGACATCTCTTTCCATGTTCAGTAAGAGTGAATTTTCAGTGAAAAGAAGATTC
AGCGACTTTCTTGGTTTGCACAGCAAATTAGCAAGCAAATATTTACATGTTGGTTATATT
GTGCCACCAGCTCCAGAAAAGAGTATAGTAGGGATGACCAAGGTCAAAGTGGGTAAAGAA
GACTCATCATCCACTGAGTTTGTAGAAAAACGGAGAGCAGCTCTTGAAAGGTATCTTCAA
AGAACAGTAAAACATCCAACTTTACTACAGGATCCTGATTTAAGGCAGTTCTTGGAAAGT
TCAGAGCTGCCTAGAGCAGTTAATACACAGGCTCTGAGTGGAGCAGGAATATTGAGGATG
GTGAACAAGGCTGCCGACGCTGTCAACAAAATGACAATCAAGATGAATGAATCGGATGCA
TGGTTTGAAGAAAAGCAGCAGCAATTTGAGAATCTGGATCAGCAACTTAGGAAACTTCAT
GTCAGTGTTGAAGCCTTGGTCTGTCATAGAAAAGAACTTTCAGCCAACACAGCTGCCTTT
GCTAAAAGTGCTGCCATGTTAGGTAATTCTGAGGATCATACTGCTTTATCTAGAGCTTTG
TCTCAGCTTGCAGAGGTTGAGGAGAAGATAGACCAGTTACATCAAGAACAAGCTTTTGCT
GACTTTTATATGTTTTCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGTGAAA
GGTGTGTTTGACCATCGAATGAAGTGCTGGCAGAAATGGGAAGATGCTCAAATTACTTTG
CTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCAGATAAAATACAG
CAAGCTAAAAATGAAATAAGAGAGTGGGAGGCGAAAGTGCAACAAGGGGAAAGAGATTTT
GAACAGATATCTAAAACGATTCGAAAAGAAGTGGGAAGATTTGAGAAAGAACGAGTGAAG
GATTTTAAAACCGTTATCATCAAGTACTTAGAATCACTAGTTCAAACACAACAACAGCTG
ATAAAATACTGGGAAGCATTCCTACCTGAAGCCAAAGCCATTGCCGTTTAAACGAATTCG
AGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGC
TAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATA
ACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATC
CGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCA
AGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGAC
ATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTA
GCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGG
GCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCA
AGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGC
ATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTC
GGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCA
GCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTG
CAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTG
CTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAG
GATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATG
CGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGC
ATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAA
GAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGAT
GGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAAT
GGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGAC
ATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTC
CTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTT
GACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACC
GGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGG
AAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCT
GGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCA
GAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCT
CGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTC
GGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGT
TCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATC
CGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGC
CACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTG
GTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCC
AGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAG
CGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGA
TCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGAT
TTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATAC
AGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTC
AGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGT
TAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTG
TCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGT
AAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGA
TGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAG
AAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCC
CATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGC
GAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT
TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAG
CGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAA
CTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTAC
AAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT