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SpecieshumanProduct IDFXC26324Cloning SiteSgfI-PmeIGenBank AccessionGeneKIBB5711SymbolCDH7
Alias : CDH7L1Descriptioncadherin 7, type 2, transcript variant bOriginal Clone IDcs01706
Length: 2355 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 785 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS11993.1 0 99.7 CDH7 CCDS82259.1 0 99.7 CDH7 CCDS11977.1 7.9e-198 63.1 CDH20 CCDS10802.1 2.2e-195 62.7 CDH8 CCDS3892.1 9.4e-194 61.9 CDH10
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 93 112 PR00205 Cadherin IPR002126 153 182 PR00205 Cadherin IPR002126 225 237 PR00205 Cadherin IPR002126 241 260 PR00205 Cadherin IPR002126 260 273 PR00205 Cadherin IPR002126 319 345 PR00205 Cadherin IPR002126 464 481 PR00205 Cadherin HMMPfam IPR002126 62 143 PF00028 Cadherin IPR002126 158 252 PF00028 Cadherin IPR002126 267 368 PF00028 Cadherin IPR002126 382 473 PF00028 Cadherin IPR002126 486 583 PF00028 Cadherin IPR000233 631 778 PF01049 Cadherin HMMSmart IPR002126 70 151 SM00112 Cadherin IPR002126 175 260 SM00112 Cadherin IPR002126 284 376 SM00112 Cadherin IPR002126 399 480 SM00112 Cadherin IPR002126 503 590 SM00112 Cadherin ProfileScan IPR002126 73 153 PS50268 Cadherin IPR002126 154 262 PS50268 Cadherin IPR002126 263 377 PS50268 Cadherin IPR002126 378 482 PS50268 Cadherin IPR002126 482 599 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 7 EFCHFLQLIALFLCFSGMSQAE 28 SECONDARY 22 2 604 GLSTGALIAILACVLTLLVLILL 626 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001349367 785 605806 99.7 100.0 NP_387450 785 605806 99.7 100.0 NP_004352 785 605806 99.7 100.0 NP_114097 801 605807 63.1 99.4 XP_024306933 801 605807 63.1 99.4 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB5711 Download>KIBB5711 2355 bp ATGAAGTTGGGCAAAGTGGAGTTCTGCCATTTTCTGCAGCTAATAGCTCTTTTCCTGTGT TTTTCTGGGATGAGTCAAGCAGAACTCTCAAGGTCCAGATCAAAGCCCTATTTCCAATCA GGGAGGTCCCGGACCAAGCGCAGCTGGGTGTGGAATCAGTTCTTTGTGCTGGAGGAATAC ATGGGTTCAGACCCCCTCTATGTAGGAAAGCTTCACTCTGATGTTGATAAAGGAGATGGT TCCATCAAATACATCTTGTCAGGCGAAGGGGCAAGTTCCATTTTCATTATTGATGAGAAC ACTGGGGATATTCATGCCACCAAGAGACTGGATCGTGAGGAGCAGGCCTACTACACGCTC CGAGCTCAAGCGCTGGATAGGCTCACCAACGAACCCGTGGAGCCCGAGTCGGAGTTTGTC ATCAAAATTCAGGATATCAACGACAATGAACCCAAATTTTTGGATGGCCCATACACGGCA GGAGTTCCCGAAATGTCTCCCGTGGGGACCTCAGTGGTACAAGTGACAGCGACGGATGCT GATGATCCTACATATGGCAACAGTGCCAGAGTGGTCTACAGTATTCTGCAAGGACAGCCG TACTTCTCAGTGGAGCCAAAGACAGGAGTCATCAAGACTGCCCTTCCAAACATGGATAGA GAGGCTAAAGACCAGTATTTGCTTGTTATTCAGGCAAAGGATATGGTTGGTCAAAATGGA GGACTGTCAGGAACTACATCAGTCACTGTGACCCTAACTGATGTCAACGATAATCCACCT CGCTTTCCTCGAAGGTCTTATCAATATAACGTCCCAGAGTCATTACCTGTAGCCTCAGTT GTGGCCAGAATTAAAGCTGCTGATGCAGATATTGGAGCTAATGCTGAAATGGAGTACAAG ATTGTGGATGGTGATGGTTTGGGCATTTTTAAGATTTCTGTTGACAAAGAAACCCAGGAA GGAATCATTACTATACAGAAGGAGCTGGATTTTGAAGCCAAAACAAGTTACACGCTACGG ATAGAAGCTGCAAATAAAGATGCCGACCCTCGCTTTCTGAGCTTGGGTCCGTTCAGTGAC ACGACAACTGTGAAGATAATTGTGGAAGATGTAGATGAGCCCCCTGTGTTCTCTTCACCC TTGTACCCTATGGAGGTGTCGGAAGCTACCCAGGTTGGGAATATCATTGGCACTGTAGCA GCTCATGACCCAGATTCTTCCAATAGCCCTGTGAGGTACTCAATTGACAGAAACACAGAC TTGGAGAGATACTTCAATATTGATGCCAACAGTGGGGTCATCACAACTGCCAAGTCTTTG GATCGAGAGACAAATGCTATTCACAATATCACAGTCCTTGCAATGGAGAGCCAGAATCCA TCTCAAGTAGGAAGAGGCTATGTGGCCATCACTATACTTGACATCAATGATAACGCCCCT GAATTTGCCATGGACTATGAGACCACCGTCTGTGAAAATGCCCAGCCGGGGCAGGTTATC CAGAAAATCAGTGCTGTGGATAAAGATGAGCCATCCAATGGACACCAGTTTTACTTCAGC TTAACAACGGATGCAACAAATAACCACAACTTTTCATTGAAAGATAACAAAGACAACACA GCCTCAATACTGACCAGGAGAAACGGCTTCCGGAGACAGGAACAATCAGTTTACTATCTG CCAATTTTCATTGTGGACAGTGGATCTCCCTCACTTAGCAGCACCAGCACCCTCACCATC CGCGTGTGTGACTGTGATGCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGTC CTACCTGCTGGCCTCAGTACAGGAGCCCTGATAGCCATACTCGCCTGTGTCTTGACATTA TTGGTGTTGATCCTCCTTATCGTCACTATGAGAAGACGGAAAAAAGAGCCCCTTATTTTT GACGAAGAAAGAGACATCAGAGAAAATATTGTGAGATACGATGACGAGGGCGGGGGAGAG GAGGACACGGAAGCGTTTGACATGGCTGCACTGAGAAACCTCAACGTCATCCGAGACACC AAGACCCGGAGGGATGTGACTCCAGAAATTCAATTCCTGAGTCGACCAGCTTTTAAAAGC ATCCCAGATAATGTCATCTTTAGGGAATTTATTTGGGAAAGATTAAAAGAAGCCGATGTT GATCCTGGTGCTCCTCCTTATGACTCCCTGCAGACATATGCTTTTGAAGGAAATGGCTCA GTTGCTGAATCACTCAGCTCTTTAGATTCCATCAGCTCAAACTCTGATCAGAACTATGAC TACCTAAGTGACTGGGGACCTCGCTTTAAACGACTCGCGGACATGTATGGGACTGGCCAA GAGAGTTTGTACTCA
Cloned ORF protein sequence for pF1KB5711 Download>KIBB5711 785 aa MKLGKVEFCHFLQLIALFLCFSGMSQAELSRSRSKPYFQSGRSRTKRSWVWNQFFVLEEY MGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTL RAQALDRLTNEPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDA DDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNG GLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGANAEMEYK IVDGDGLGIFKISVDKETQEGIITIQKELDFEAKTSYTLRIEAANKDADPRFLSLGPFSD TTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTD LERYFNIDANSGVITTAKSLDRETNAIHNITVLAMESQNPSQVGRGYVAITILDINDNAP EFAMDYETTVCENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDATNNHNFSLKDNKDNT ASILTRRNGFRRQEQSVYYLPIFIVDSGSPSLSSTSTLTIRVCDCDADGVAQTCNAEAYV LPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGE EDTEAFDMAALRNLNVIRDTKTRRDVTPEIQFLSRPAFKSIPDNVIFREFIWERLKEADV DPGAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFKRLADMYGTGQ ESLYS
Nucleotide Sequence (with vector) for pF1KB5711 Download>pF1KB5711 5468 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAAGTTGGGC AAAGTGGAGTTCTGCCATTTTCTGCAGCTAATAGCTCTTTTCCTGTGTTTTTCTGGGATG AGTCAAGCAGAACTCTCAAGGTCCAGATCAAAGCCCTATTTCCAATCAGGGAGGTCCCGG ACCAAGCGCAGCTGGGTGTGGAATCAGTTCTTTGTGCTGGAGGAATACATGGGTTCAGAC CCCCTCTATGTAGGAAAGCTTCACTCTGATGTTGATAAAGGAGATGGTTCCATCAAATAC ATCTTGTCAGGCGAAGGGGCAAGTTCCATTTTCATTATTGATGAGAACACTGGGGATATT CATGCCACCAAGAGACTGGATCGTGAGGAGCAGGCCTACTACACGCTCCGAGCTCAAGCG CTGGATAGGCTCACCAACGAACCCGTGGAGCCCGAGTCGGAGTTTGTCATCAAAATTCAG GATATCAACGACAATGAACCCAAATTTTTGGATGGCCCATACACGGCAGGAGTTCCCGAA ATGTCTCCCGTGGGGACCTCAGTGGTACAAGTGACAGCGACGGATGCTGATGATCCTACA TATGGCAACAGTGCCAGAGTGGTCTACAGTATTCTGCAAGGACAGCCGTACTTCTCAGTG GAGCCAAAGACAGGAGTCATCAAGACTGCCCTTCCAAACATGGATAGAGAGGCTAAAGAC CAGTATTTGCTTGTTATTCAGGCAAAGGATATGGTTGGTCAAAATGGAGGACTGTCAGGA ACTACATCAGTCACTGTGACCCTAACTGATGTCAACGATAATCCACCTCGCTTTCCTCGA AGGTCTTATCAATATAACGTCCCAGAGTCATTACCTGTAGCCTCAGTTGTGGCCAGAATT AAAGCTGCTGATGCAGATATTGGAGCTAATGCTGAAATGGAGTACAAGATTGTGGATGGT GATGGTTTGGGCATTTTTAAGATTTCTGTTGACAAAGAAACCCAGGAAGGAATCATTACT ATACAGAAGGAGCTGGATTTTGAAGCCAAAACAAGTTACACGCTACGGATAGAAGCTGCA AATAAAGATGCCGACCCTCGCTTTCTGAGCTTGGGTCCGTTCAGTGACACGACAACTGTG AAGATAATTGTGGAAGATGTAGATGAGCCCCCTGTGTTCTCTTCACCCTTGTACCCTATG GAGGTGTCGGAAGCTACCCAGGTTGGGAATATCATTGGCACTGTAGCAGCTCATGACCCA GATTCTTCCAATAGCCCTGTGAGGTACTCAATTGACAGAAACACAGACTTGGAGAGATAC TTCAATATTGATGCCAACAGTGGGGTCATCACAACTGCCAAGTCTTTGGATCGAGAGACA AATGCTATTCACAATATCACAGTCCTTGCAATGGAGAGCCAGAATCCATCTCAAGTAGGA AGAGGCTATGTGGCCATCACTATACTTGACATCAATGATAACGCCCCTGAATTTGCCATG GACTATGAGACCACCGTCTGTGAAAATGCCCAGCCGGGGCAGGTTATCCAGAAAATCAGT GCTGTGGATAAAGATGAGCCATCCAATGGACACCAGTTTTACTTCAGCTTAACAACGGAT GCAACAAATAACCACAACTTTTCATTGAAAGATAACAAAGACAACACAGCCTCAATACTG ACCAGGAGAAACGGCTTCCGGAGACAGGAACAATCAGTTTACTATCTGCCAATTTTCATT GTGGACAGTGGATCTCCCTCACTTAGCAGCACCAGCACCCTCACCATCCGCGTGTGTGAC TGTGATGCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGTCCTACCTGCTGGC CTCAGTACAGGAGCCCTGATAGCCATACTCGCCTGTGTCTTGACATTATTGGTGTTGATC CTCCTTATCGTCACTATGAGAAGACGGAAAAAAGAGCCCCTTATTTTTGACGAAGAAAGA GACATCAGAGAAAATATTGTGAGATACGATGACGAGGGCGGGGGAGAGGAGGACACGGAA GCGTTTGACATGGCTGCACTGAGAAACCTCAACGTCATCCGAGACACCAAGACCCGGAGG GATGTGACTCCAGAAATTCAATTCCTGAGTCGACCAGCTTTTAAAAGCATCCCAGATAAT GTCATCTTTAGGGAATTTATTTGGGAAAGATTAAAAGAAGCCGATGTTGATCCTGGTGCT CCTCCTTATGACTCCCTGCAGACATATGCTTTTGAAGGAAATGGCTCAGTTGCTGAATCA CTCAGCTCTTTAGATTCCATCAGCTCAAACTCTGATCAGAACTATGACTACCTAAGTGAC TGGGGACCTCGCTTTAAACGACTCGCGGACATGTATGGGACTGGCCAAGAGAGTTTGTAC TCAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCG ACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGA ATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCG TAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAA AAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTT TCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCT GTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCT CAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCC CGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGC TACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTAT CTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAA ACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAA AAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGA AAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCT TTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACC ATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTG CATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTT TGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTA CAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACC GCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACA GATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC GGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTC AGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTA GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGG CAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG GCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTAT CCGCTCAT
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