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SpecieshumanProduct IDFXC01429Cloning SiteSgfI-PmeIGeneKIBB4700SymbolCDH2
Alias : ACOGS, ARVD14, CD325, CDHN, CDw325, NCADDescriptioncadherin 2, type 1, N-cadherin (neuronal), transcript variant 1Original Clone IDfk14823
Length: 2718 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 906 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS11891.1 0 100.0 CDH2 CCDS77172.1 0 99.1 CDH2 CCDS58784.1 0 68.0 CDH4 CCDS13488.1 0 66.1 CDH4 CCDS10976.1 2.7e-116 43.7 CDH15
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 208 227 PR00205 Cadherin IPR002126 267 296 PR00205 Cadherin IPR002126 344 356 PR00205 Cadherin IPR002126 361 380 PR00205 Cadherin IPR002126 380 393 PR00205 Cadherin IPR002126 440 466 PR00205 Cadherin IPR009124 529 548 PR01820 Desmocollin IPR002126 587 604 PR00205 Cadherin IPR009124 694 712 PR01820 Desmocollin IPR009124 759 781 PR01820 Desmocollin HMMPfam IPR014868 32 120 PF08758 Cadherin prodomain-like IPR002126 166 257 PF00028 Cadherin IPR002126 274 373 PF00028 Cadherin IPR002126 389 488 PF00028 Cadherin IPR002126 504 595 PF00028 Cadherin IPR002126 609 701 PF00028 Cadherin IPR000233 748 903 PF01049 Cadherin HMMSmart IPR002126 182 265 SM00112 Cadherin IPR002126 289 380 SM00112 Cadherin IPR002126 403 496 SM00112 Cadherin IPR002126 519 603 SM00112 Cadherin IPR002126 623 708 SM00112 Cadherin ProfileScan IPR002126 160 267 PS50268 Cadherin IPR002126 268 382 PS50268 Cadherin IPR002126 383 497 PS50268 Cadherin IPR002126 498 605 PS50268 Cadherin IPR002126 604 710 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 10 TLLPLLAALLQASVEASGEIALC 32 SECONDARY 23 2 721 GTGAIIAILLCIIILLILVLMFV 743 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001783 906 114020 100.0 100.0 NP_001295105 875 114020 99.1 94.9 XP_016881003 848 114020 100.0 92.5 XP_011524090 821 114020 100.0 90.6 NP_001239268 842 603006 68.0 91.5 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB4700 Download>KIBB4700 2718 bp ATGTGCCGGATAGCGGGAGCGCTGCGGACCCTGCTGCCGCTGCTGGCGGCCCTGCTTCAG GCGTCTGTAGAGGCTTCTGGTGAAATCGCATTATGCAAGACTGGATTTCCTGAAGATGTT TACAGTGCAGTCTTATCGAAGGATGTGCATGAAGGACAGCCTCTTCTCAATGTGAAGTTT AGCAACTGCAATGGAAAAAGAAAAGTACAATATGAGAGCAGTGAGCCTGCAGATTTTAAG GTGGATGAAGATGGCATGGTGTATGCCGTGAGAAGCTTTCCACTCTCTTCTGAGCATGCC AAGTTCCTGATATATGCCCAAGACAAAGAGACCCAGGAAAAGTGGCAAGTGGCAGTAAAA TTGAGCCTGAAGCCAACCTTAACTGAGGAGTCAGTGAAGGAGTCAGCAGAAGTTGAAGAA ATAGTGTTCCCAAGACAATTCAGTAAGCACAGTGGCCACCTACAAAGGCAGAAGAGAGAC TGGGTCATCCCTCCAATCAACTTGCCAGAAAACTCCAGGGGACCTTTTCCTCAAGAGCTT GTCAGGATCAGGTCTGATAGAGATAAAAACCTTTCACTGCGGTACAGTGTAACTGGGCCA GGAGCTGACCAGCCTCCAACTGGTATCTTCATTATCAACCCCATCTCGGGTCAGCTGTCG GTGACAAAGCCCCTGGATCGCGAGCAGATAGCCCGGTTTCATTTGAGGGCACATGCAGTA GATATTAATGGAAATCAAGTGGAGAACCCCATTGACATTGTCATCAATGTTATTGACATG AATGACAACAGACCTGAGTTCTTACACCAGGTTTGGAATGGGACAGTTCCTGAGGGATCA AAGCCTGGAACATATGTGATGACCGTAACAGCAATTGATGCTGACGATCCCAATGCCCTC AATGGGATGTTGAGGTACAGAATCGTGTCTCAGGCTCCAAGCACCCCTTCACCCAACATG TTTACAATCAACAATGAGACTGGTGACATCATCACAGTGGCAGCTGGACTTGATCGAGAA AAAGTGCAACAGTATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCCCACATAT GGCCTTTCAAACACAGCCACGGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCA GAGTTTACTGCCATGACGTTTTATGGTGAAGTTCCTGAGAACAGGGTAGACATCATAGTA GCTAATCTAACTGTGACCGATAAGGATCAACCCCATACACCAGCCTGGAACGCAGTGTAC AGAATCAGTGGCGGAGATCCTACTGGACGGTTCGCCATCCAGACCGACCCAAACAGCAAC GACGGGTTAGTCACCGTGGTCAAACCAATCGACTTTGAAACAAATAGGATGTTTGTCCTT ACTGTTGCTGCAGAAAATCAAGTGCCATTAGCCAAGGGAATTCAGCACCCGCCTCAGTCA ACTGCAACCGTGTCTGTTACAGTTATTGACGTAAATGAAAACCCTTATTTTGCCCCCAAT CCTAAGATCATTCGCCAAGAAGAAGGGCTTCATGCCGGTACCATGTTGACAACATTCACT GCTCAGGACCCAGATCGATATATGCAGCAAAATATTAGATACACTAAATTATCTGATCCT GCCAATTGGCTAAAAATAGATCCTGTGAATGGACAAATAACTACAATTGCTGTTTTGGAC CGAGAATCACCAAATGTGAAAAACAATATATATAATGCTACTTTCCTTGCTTCTGACAAT GGAATTCCTCCTATGAGTGGAACAGGAACGCTGCAGATCTATTTACTTGATATTAATGAC AATGCCCCTCAAGTGTTACCTCAAGAGGCAGAGACTTGCGAAACTCCAGACCCCAATTCA ATTAATATTACAGCACTTGATTATGACATTGATCCAAATGCTGGACCATTTGCTTTTGAT CTTCCTTTATCTCCAGTGACTATTAAGAGAAATTGGACCATCACTCGGCTTAATGGTGAT TTTGCTCAGCTTAATTTAAAGATAAAATTTCTTGAAGCTGGTATCTATGAAGTTCCCATC ATAATCACAGATTCGGGTAATCCTCCCAAATCAAATATTTCCATCCTGCGCGTGAAGGTT TGCCAGTGTGACTCCAACGGGGACTGCACAGATGTGGACAGGATTGTGGGTGCGGGGCTT GGCACCGGTGCCATCATTGCCATCCTGCTCTGCATCATCATCCTGCTTATCCTTGTGCTG ATGTTTGTGGTATGGATGAAACGCCGGGATAAAGAACGCCAGGCCAAACAACTTTTAATT GATCCAGAAGATGATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGGAGGAGAA GAAGACCAGGACTATGACTTGAGCCAGCTGCAGCAGCCTGACACTGTGGAGCCTGATGCC ATCAAGCCTGTGGGAATCCGACGAATGGATGAAAGACCCATCCACGCCGAGCCCCAGTAT CCGGTCCGATCTGCAGCCCCACACCCTGGAGACATTGGGGACTTCATTAATGAGGGCCTT AAAGCGGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTAT GAAGGCAGTGGCTCCACTGCTGGGTCCTTGAGCTCCCTTAATTCCTCAAGTAGTGGTGGT GAGCAGGACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATG TATGGTGGAGGTGATGAC
Cloned ORF protein sequence for pF1KB4700 Download>KIBB4700 906 aa MCRIAGALRTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLSKDVHEGQPLLNVKF SNCNGKRKVQYESSEPADFKVDEDGMVYAVRSFPLSSEHAKFLIYAQDKETQEKWQVAVK LSLKPTLTEESVKESAEVEEIVFPRQFSKHSGHLQRQKRDWVIPPINLPENSRGPFPQEL VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREQIARFHLRAHAV DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGTVPEGSKPGTYVMTVTAIDADDPNAL NGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTY GLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDIIVANLTVTDKDQPHTPAWNAVY RISGGDPTGRFAIQTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS TATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGTMLTTFTAQDPDRYMQQNIRYTKLSDP ANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDIND NAPQVLPQEAETCETPDPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTITRLNGD FAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVDRIVGAGL GTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGE EDQDYDLSQLQQPDTVEPDAIKPVGIRRMDERPIHAEPQYPVRSAAPHPGDIGDFINEGL KAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGGEQDYDYLNDWGPRFKKLADM YGGGDD
Nucleotide Sequence (with vector) for pF1KB4700 Download>pF1KB4700 5831 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTGCCGGATA GCGGGAGCGCTGCGGACCCTGCTGCCGCTGCTGGCGGCCCTGCTTCAGGCGTCTGTAGAG GCTTCTGGTGAAATCGCATTATGCAAGACTGGATTTCCTGAAGATGTTTACAGTGCAGTC TTATCGAAGGATGTGCATGAAGGACAGCCTCTTCTCAATGTGAAGTTTAGCAACTGCAAT GGAAAAAGAAAAGTACAATATGAGAGCAGTGAGCCTGCAGATTTTAAGGTGGATGAAGAT GGCATGGTGTATGCCGTGAGAAGCTTTCCACTCTCTTCTGAGCATGCCAAGTTCCTGATA TATGCCCAAGACAAAGAGACCCAGGAAAAGTGGCAAGTGGCAGTAAAATTGAGCCTGAAG CCAACCTTAACTGAGGAGTCAGTGAAGGAGTCAGCAGAAGTTGAAGAAATAGTGTTCCCA AGACAATTCAGTAAGCACAGTGGCCACCTACAAAGGCAGAAGAGAGACTGGGTCATCCCT CCAATCAACTTGCCAGAAAACTCCAGGGGACCTTTTCCTCAAGAGCTTGTCAGGATCAGG TCTGATAGAGATAAAAACCTTTCACTGCGGTACAGTGTAACTGGGCCAGGAGCTGACCAG CCTCCAACTGGTATCTTCATTATCAACCCCATCTCGGGTCAGCTGTCGGTGACAAAGCCC CTGGATCGCGAGCAGATAGCCCGGTTTCATTTGAGGGCACATGCAGTAGATATTAATGGA AATCAAGTGGAGAACCCCATTGACATTGTCATCAATGTTATTGACATGAATGACAACAGA CCTGAGTTCTTACACCAGGTTTGGAATGGGACAGTTCCTGAGGGATCAAAGCCTGGAACA TATGTGATGACCGTAACAGCAATTGATGCTGACGATCCCAATGCCCTCAATGGGATGTTG AGGTACAGAATCGTGTCTCAGGCTCCAAGCACCCCTTCACCCAACATGTTTACAATCAAC AATGAGACTGGTGACATCATCACAGTGGCAGCTGGACTTGATCGAGAAAAAGTGCAACAG TATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCCCACATATGGCCTTTCAAAC ACAGCCACGGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCC ATGACGTTTTATGGTGAAGTTCCTGAGAACAGGGTAGACATCATAGTAGCTAATCTAACT GTGACCGATAAGGATCAACCCCATACACCAGCCTGGAACGCAGTGTACAGAATCAGTGGC GGAGATCCTACTGGACGGTTCGCCATCCAGACCGACCCAAACAGCAACGACGGGTTAGTC ACCGTGGTCAAACCAATCGACTTTGAAACAAATAGGATGTTTGTCCTTACTGTTGCTGCA GAAAATCAAGTGCCATTAGCCAAGGGAATTCAGCACCCGCCTCAGTCAACTGCAACCGTG TCTGTTACAGTTATTGACGTAAATGAAAACCCTTATTTTGCCCCCAATCCTAAGATCATT CGCCAAGAAGAAGGGCTTCATGCCGGTACCATGTTGACAACATTCACTGCTCAGGACCCA GATCGATATATGCAGCAAAATATTAGATACACTAAATTATCTGATCCTGCCAATTGGCTA AAAATAGATCCTGTGAATGGACAAATAACTACAATTGCTGTTTTGGACCGAGAATCACCA AATGTGAAAAACAATATATATAATGCTACTTTCCTTGCTTCTGACAATGGAATTCCTCCT ATGAGTGGAACAGGAACGCTGCAGATCTATTTACTTGATATTAATGACAATGCCCCTCAA GTGTTACCTCAAGAGGCAGAGACTTGCGAAACTCCAGACCCCAATTCAATTAATATTACA GCACTTGATTATGACATTGATCCAAATGCTGGACCATTTGCTTTTGATCTTCCTTTATCT CCAGTGACTATTAAGAGAAATTGGACCATCACTCGGCTTAATGGTGATTTTGCTCAGCTT AATTTAAAGATAAAATTTCTTGAAGCTGGTATCTATGAAGTTCCCATCATAATCACAGAT TCGGGTAATCCTCCCAAATCAAATATTTCCATCCTGCGCGTGAAGGTTTGCCAGTGTGAC TCCAACGGGGACTGCACAGATGTGGACAGGATTGTGGGTGCGGGGCTTGGCACCGGTGCC ATCATTGCCATCCTGCTCTGCATCATCATCCTGCTTATCCTTGTGCTGATGTTTGTGGTA TGGATGAAACGCCGGGATAAAGAACGCCAGGCCAAACAACTTTTAATTGATCCAGAAGAT GATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGGAGGAGAAGAAGACCAGGAC TATGACTTGAGCCAGCTGCAGCAGCCTGACACTGTGGAGCCTGATGCCATCAAGCCTGTG GGAATCCGACGAATGGATGAAAGACCCATCCACGCCGAGCCCCAGTATCCGGTCCGATCT GCAGCCCCACACCCTGGAGACATTGGGGACTTCATTAATGAGGGCCTTAAAGCGGCTGAC AATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGC TCCACTGCTGGGTCCTTGAGCTCCCTTAATTCCTCAAGTAGTGGTGGTGAGCAGGACTAT GATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGT GATGACGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGG CATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCAC CGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTT GCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTA TCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGT CCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTT CTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCT TCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAAC TGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAG ACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCC GCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGAT GCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTG TCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACG GGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTA TTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTA TCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTC GACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTC GATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGG CTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTG CCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGT GTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGC GGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGC ATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGA CCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAA TCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGA AAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAAC AAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTT TCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCC GTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAAT CCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAG ACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCC CAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAG CGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAAC AGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGG GTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCT ATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGC TCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGA GTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAA ACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGG TTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTG GTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGC GTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAA ACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGAT ACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAG CGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGG TAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG CTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGA GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGC GGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG ATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATG TATCCGCTCAT
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