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SpecieshumanProduct IDFXC01392Cloning SiteSgfI-PmeIGeneKIBB4380SymbolSSTR1
Alias : SRIF-2, SS-1-R, SS1-R, SS1RDescriptionsomatostatin receptor 1Original Clone IDfh23275
Length: 1173 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 391 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS9666.1 5.9e-112 100.0 SSTR1 CCDS42856.1 4.3e-61 62.9 SSTR4 CCDS11691.1 1.5e-46 55.6 SSTR2 CCDS10429.1 5.4e-44 49.9 SSTR5 CCDS13944.1 3.2e-42 49.5 SSTR3
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR001116 17 36 PR00587 Somatostatin receptor IPR001116 37 56 PR00587 Somatostatin receptor IPR000586 57 69 PR00246 Somatostatin receptor IPR000276 60 84 PR00237 GPCR IPR000276 93 114 PR00237 GPCR IPR000586 112 120 PR00246 Somatostatin receptor IPR000586 131 140 PR00246 Somatostatin receptor IPR000276 137 159 PR00237 GPCR IPR000276 173 194 PR00237 GPCR IPR001116 195 213 PR00587 Somatostatin receptor IPR000276 224 247 PR00237 GPCR IPR000586 248 257 PR00246 Somatostatin receptor IPR000586 258 271 PR00246 Somatostatin receptor IPR000276 269 293 PR00237 GPCR IPR000586 291 299 PR00246 Somatostatin receptor IPR001116 295 312 PR00587 Somatostatin receptor IPR000276 305 331 PR00237 GPCR IPR000586 325 337 PR00246 Somatostatin receptor IPR001116 340 360 PR00587 Somatostatin receptor IPR001116 361 380 PR00587 Somatostatin receptor HMMPfam IPR000276 75 323 PF00001 GPCR ProfileScan IPR017452 75 323 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 58 AILISFIYSVVCLVGLCGNSMVI 80 PRIMARY 23 2 95 IYILNLAIADELLMLSVPFLVTS 117 SECONDARY 23 3 129 LCRLVLSVDAVNMFTSIYCLTVL 151 PRIMARY 23 4 182 WVLSLLVILPIVVFSRTAANSDG 204 SECONDARY 23 5 227 TFLMGFLLPVGAICLCYVLIIAK 249 PRIMARY 23 6 272 MVMMVVMVFVICWMPFYVVQLVN 294 PRIMARY 23 7 304 VSQLSVILGYANSCANPILYGFL 326 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001040 391 182451 100.0 100.0 NP_001043 388 182454 62.9 89.5 NP_001166031 364 182455 49.9 87.2 NP_001044 364 182455 49.9 87.2 XP_016884412 418 182453 49.5 82.1 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB4380 Download>KIBB4380 1173 bp ATGTTCCCCAATGGCACCGCCTCCTCTCCTTCCTCCTCTCCTAGCCCCAGCCCGGGCAGC TGCGGCGAAGGCGGCGGCAGCAGGGGCCCCGGGGCCGGCGCTGCGGACGGCATGGAGGAG CCAGGGCGAAATGCGTCCCAGAACGGGACCTTGAGCGAGGGCCAGGGCAGCGCCATCCTG ATCTCTTTCATCTACTCCGTGGTGTGCCTGGTGGGGCTGTGTGGGAACTCTATGGTCATC TACGTGATCCTGCGCTATGCCAAGATGAAGACGGCCACCAACATCTACATCCTAAATCTG GCCATTGCTGATGAGCTGCTCATGCTCAGCGTGCCCTTCCTAGTCACCTCCACGTTGTTG CGCCACTGGCCCTTCGGTGCGCTGCTCTGCCGCCTCGTGCTCAGCGTGGACGCGGTCAAC ATGTTCACCAGCATCTACTGTCTGACTGTGCTCAGCGTGGACCGCTACGTGGCCGTGGTG CATCCCATCAAGGCGGCCCGCTACCGCCGGCCCACCGTGGCCAAGGTAGTAAACCTGGGC GTGTGGGTGCTATCGCTGCTCGTCATCCTGCCCATCGTGGTCTTCTCTCGCACCGCGGCC AACAGCGACGGCACGGTGGCTTGCAACATGCTCATGCCAGAGCCCGCTCAACGCTGGCTG GTGGGCTTCGTGTTGTACACATTTCTCATGGGCTTCCTGCTGCCCGTGGGGGCTATCTGC CTGTGCTACGTGCTCATCATTGCTAAGATGCGCATGGTGGCCCTCAAGGCCGGCTGGCAG CAGCGCAAGCGCTCGGAGCGCAAGATCACCTTAATGGTGATGATGGTGGTGATGGTGTTT GTCATCTGCTGGATGCCTTTCTACGTGGTGCAGCTGGTCAACGTGTTTGCTGAGCAGGAC GACGCCACGGTGAGTCAGCTGTCGGTCATCCTCGGCTATGCCAACAGCTGCGCCAACCCC ATCCTCTATGGCTTTCTCTCAGACAACTTCAAGCGCTCTTTCCAACGCATCCTATGCCTC AGCTGGATGGACAACGCCGCGGAGGAGCCGGTTGACTATTACGCCACCGCGCTCAAGAGC CGTGCCTACAGTGTGGAAGACTTCCAACCTGAGAACCTGGAGTCCGGCGGCGTCTTCCGT AATGGCACCTGCACGTCCCGGATCACGACGCTC
Cloned ORF protein sequence for pF1KB4380 Download>KIBB4380 391 aa MFPNGTASSPSSSPSPSPGSCGEGGGSRGPGAGAADGMEEPGRNASQNGTLSEGQGSAIL ISFIYSVVCLVGLCGNSMVIYVILRYAKMKTATNIYILNLAIADELLMLSVPFLVTSTLL RHWPFGALLCRLVLSVDAVNMFTSIYCLTVLSVDRYVAVVHPIKAARYRRPTVAKVVNLG VWVLSLLVILPIVVFSRTAANSDGTVACNMLMPEPAQRWLVGFVLYTFLMGFLLPVGAIC LCYVLIIAKMRMVALKAGWQQRKRSERKITLMVMMVVMVFVICWMPFYVVQLVNVFAEQD DATVSQLSVILGYANSCANPILYGFLSDNFKRSFQRILCLSWMDNAAEEPVDYYATALKS RAYSVEDFQPENLESGGVFRNGTCTSRITTL
Nucleotide Sequence (with vector) for pF1KB4380 Download>pF1KB4380 4286 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTTCCCCAAT GGCACCGCCTCCTCTCCTTCCTCCTCTCCTAGCCCCAGCCCGGGCAGCTGCGGCGAAGGC GGCGGCAGCAGGGGCCCCGGGGCCGGCGCTGCGGACGGCATGGAGGAGCCAGGGCGAAAT GCGTCCCAGAACGGGACCTTGAGCGAGGGCCAGGGCAGCGCCATCCTGATCTCTTTCATC TACTCCGTGGTGTGCCTGGTGGGGCTGTGTGGGAACTCTATGGTCATCTACGTGATCCTG CGCTATGCCAAGATGAAGACGGCCACCAACATCTACATCCTAAATCTGGCCATTGCTGAT GAGCTGCTCATGCTCAGCGTGCCCTTCCTAGTCACCTCCACGTTGTTGCGCCACTGGCCC TTCGGTGCGCTGCTCTGCCGCCTCGTGCTCAGCGTGGACGCGGTCAACATGTTCACCAGC ATCTACTGTCTGACTGTGCTCAGCGTGGACCGCTACGTGGCCGTGGTGCATCCCATCAAG GCGGCCCGCTACCGCCGGCCCACCGTGGCCAAGGTAGTAAACCTGGGCGTGTGGGTGCTA TCGCTGCTCGTCATCCTGCCCATCGTGGTCTTCTCTCGCACCGCGGCCAACAGCGACGGC ACGGTGGCTTGCAACATGCTCATGCCAGAGCCCGCTCAACGCTGGCTGGTGGGCTTCGTG TTGTACACATTTCTCATGGGCTTCCTGCTGCCCGTGGGGGCTATCTGCCTGTGCTACGTG CTCATCATTGCTAAGATGCGCATGGTGGCCCTCAAGGCCGGCTGGCAGCAGCGCAAGCGC TCGGAGCGCAAGATCACCTTAATGGTGATGATGGTGGTGATGGTGTTTGTCATCTGCTGG ATGCCTTTCTACGTGGTGCAGCTGGTCAACGTGTTTGCTGAGCAGGACGACGCCACGGTG AGTCAGCTGTCGGTCATCCTCGGCTATGCCAACAGCTGCGCCAACCCCATCCTCTATGGC TTTCTCTCAGACAACTTCAAGCGCTCTTTCCAACGCATCCTATGCCTCAGCTGGATGGAC AACGCCGCGGAGGAGCCGGTTGACTATTACGCCACCGCGCTCAAGAGCCGTGCCTACAGT GTGGAAGACTTCCAACCTGAGAACCTGGAGTCCGGCGGCGTCTTCCGTAATGGCACCTGC ACGTCCCGGATCACGACGCTCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTA GAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGA GTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGT CTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAAC CGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCT TGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTT CTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTT GCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAG CCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCA AGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCAC GCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACA ATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTT GTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCG TGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGA AGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCT CCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCG GCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATG GAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCC GAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCAT GGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGAC TGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATT GCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCT CCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTC TGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAA GATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGC GTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAAT CTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGA GCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGT CCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATA CCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTAC CGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGG TTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCG TGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAG CGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCT TTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTC AGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTT TTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCG TATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTT CGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTG GCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCG GCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAAC GCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCG TAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGA TCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTT GCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACG CCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATC AAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG TGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC GGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGA AGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAA ATACATTCAAATATGTATCCGCTCAT
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