SDCBP2 ORF clone pF1KB3561

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KOP Flexi HaloTag ORF List search

Flexi ORF Clone pF1KB3561

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Clone info.

Species

human

Clone Name

pF1KB3561 Sequence (with vector) Restriction Map

Product ID

FXC02104

HaloTag Clone PID

FHC02104

Original Clone PID

ORK02104

ORF Sequence

DNA sequence (621 bp)
Protein sequence (207 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464263]

Gene

KIBB3561

Symbol

SDCBP2

Alias : SITAC, SITAC18, ST-2, ST2

Description

syndecan binding protein (syntenin) 2, transcript variant 2

Original Clone ID

hg04050

Features of the cloned ORF sequence

Description

Length: 621 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 207 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS13013.1 1.4e-79 100.0 SDCBP2 CCDS42848.1 1.8e-79 100.0 SDCBP2 CCDS47863.1 1.5e-56 66.0 SDCBP CCDS47862.1 1.5e-56 66.0 SDCBP CCDS6172.1 1.5e-56 66.0 SDCBP The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001478 24 99 PF00595 PDZ/DHR/GLGF IPR001478 108 178 PF00595 PDZ/DHR/GLGF HMMSmart IPR001478 32 103 SM00228 PDZ/DHR/GLGF IPR001478 116 182 SM00228 PDZ/DHR/GLGF ProfileScan IPR001478 23 102 PS50106 PDZ/DHR/GLGF IPR001478 107 182 PS50106 PDZ/DHR/GLGF
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001007069 292 602217 66.0 99.5 NP_001007071 297 602217 66.0 99.5 NP_001007070 297 602217 66.0 99.5 NP_001007068 298 602217 66.0 99.5 NP_005616 298 602217 66.0 99.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB3561 Download

>KIBB3561  621 bp
ATGGTGGCACCGGTAACCGGGTACAGCCTGGGCGTGCGGCGAGCTGAGATCAAGCCCGGG
GTGCGCGAGATCCACCTGTGCAAGGACGAGCGCGGCAAGACCGGGCTGAGGCTGCGGAAG
GTCGACCAGGGGCTCTTTGTGCAGTTGGTCCAGGCCAACACCCCTGCATCCCTTGTGGGG
CTGCGCTTTGGGGACCAGCTCCTGCAGATTGACGGGCGTGACTGTGCTGGGTGGAGCTCG
CACAAAGCCCATCAGGTGGTGAAGAAGGCATCAGGCGATAAGATTGTCGTGGTGGTTCGG
GACAGGCCATTCCAGCGGACTGTCACCATGCACAAGGACAGCATGGGCCACGTCGGCTTC
GTGATCAAGAAGGGGAAGATTGTCTCTCTGGTCAAAGGGAGTTCTGCGGCCCGCAACGGG
CTCCTCACCAACCACTACGTGTGTGAGGTAGACGGGCAGAATGTTATCGGGCTGAAGGAC
AAAAAGATCATGGAGATTCTGGCCACGGCTGGGAACGTTGTCACCCTGACCATCATCCCC
AGTGTGATCTACGAGCACATGGTCAAAAAGTTGCCTCCAGTCCTGCTCCACCACACCATG
GACCACTCCATCCCAGATGCC

ORF Protein

Cloned ORF protein sequence for pF1KB3561 Download

>KIBB3561  207 aa
MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVG
LRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGF
VIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIP
SVIYEHMVKKLPPVLLHHTMDHSIPDA

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB3561 Download

>pF1KB3561  3734 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGTGGCACCG
GTAACCGGGTACAGCCTGGGCGTGCGGCGAGCTGAGATCAAGCCCGGGGTGCGCGAGATC
CACCTGTGCAAGGACGAGCGCGGCAAGACCGGGCTGAGGCTGCGGAAGGTCGACCAGGGG
CTCTTTGTGCAGTTGGTCCAGGCCAACACCCCTGCATCCCTTGTGGGGCTGCGCTTTGGG
GACCAGCTCCTGCAGATTGACGGGCGTGACTGTGCTGGGTGGAGCTCGCACAAAGCCCAT
CAGGTGGTGAAGAAGGCATCAGGCGATAAGATTGTCGTGGTGGTTCGGGACAGGCCATTC
CAGCGGACTGTCACCATGCACAAGGACAGCATGGGCCACGTCGGCTTCGTGATCAAGAAG
GGGAAGATTGTCTCTCTGGTCAAAGGGAGTTCTGCGGCCCGCAACGGGCTCCTCACCAAC
CACTACGTGTGTGAGGTAGACGGGCAGAATGTTATCGGGCTGAAGGACAAAAAGATCATG
GAGATTCTGGCCACGGCTGGGAACGTTGTCACCCTGACCATCATCCCCAGTGTGATCTAC
GAGCACATGGTCAAAAAGTTGCCTCCAGTCCTGCTCCACCACACCATGGACCACTCCATC
CCAGATGCCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGC
AGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGC
CACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTT
TTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAG
CTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCT
TGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGC
TTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGA
GCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTA
AACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAA
GAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCG
GCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCT
GATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGAC
CTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACG
ACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTG
CTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAA
GTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCA
TTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTT
GTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCC
AGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGC
TTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTG
GGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTT
GGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAG
CGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAA
TGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATC
CACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAG
GAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCA
TCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCA
GGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGG
ATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAG
GTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGT
TCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACA
CGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGG
CGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATT
TGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATC
CGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCG
CAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTG
GAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTA
GATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGT
GAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTC
TGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGG
GTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGG
TGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGA
TAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCT
GATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAG
TAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGA
TGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAA
AGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC
TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT
GGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA
CGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAAT
ATGTATCCGCTCAT