PODXL ORF clone FXC29279

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Flexi ORF Clone FXC29279

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Clone info.

Species

human

Clone Name

pF1KE2570 Sequence (with vector) Restriction Map

Product ID

FXC29279

HaloTag Clone PID

FHC29279

ORF Sequence

DNA sequence (1578 bp)
Protein sequence (526 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE2570

Symbol

PODXL

Alias : Gp200, PC, PCLP, PCLP-1, PDX, PODXL1, gp135

Description

podocalyxin-like, transcript variant 2

Original Clone ID

oc01571

Features of the cloned ORF sequence

Description

Length: 1578 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 526 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS47714.1 2.2e-101 100.0 PODXL CCDS34755.1 1.5e-57 94.3 PODXL The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR013836 326 526 PF06365 CD34/Podocalyxin
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 2 RCALALSALLLLLSTPPLLPS 22 SECONDARY 21 2 428 MPLIITIVCMASFLLLVAALYGC 450 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005388 526 602632 100.0 100.0 NP_001018121 558 602632 94.3 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KE2570 Download

>KIEE2570  1578 bp
ATGCGCTGCGCGCTGGCGCTCTCGGCGCTGCTGCTACTGTTGTCAACGCCGCCGCTGCTG
CCGTCGTCGCCGTCGCCGTCGCCGTCGCCCTCCCAGAATGCAACCCAGACTACTACGGAC
TCATCTAACAAAACAGCACCGACTCCAGCATCCAGTGTCACCATCATGGCTACAGATACA
GCCCAGCAGAGCACAGTCCCCACTTCCAAGGCCAACGAAATCTTGGCCTCAGTCAAGGCG
ACCACCCTTGGTGTATCCAGTGACTCACCGGGGACTACAACCCTGGCTCAGCAAGTCTCA
GGCCCAGTCAACACTACCGTGGCTAGAGGAGGCGGCTCAGGCAACCCTACTACCACCATC
GAGAGCCCCAAGAGCACAAAAAGTGCAGACACCACTACAGTTGCAACCTCCACAGCCACA
GCTAAACCTAACACCACAAGCAGCCAGAATGGAGCAGAAGATACAACAAACTCTGGGGGG
AAAAGCAGCCACAGTGTGACCACAGACCTCACATCCACTAAGGCAGAACATCTGACGACC
CCTCACCCTACAAGTCCACTTAGCCCCCGACAACCCACTTCGACGCATCCTGTGGCCACC
CCAACAAGCTCGGGACATGACCATCTTATGAAAATTTCAAGCAGTTCAAGCACTGTGGCT
ATCCCTGGCTACACCTTCACAAGCCCGGGGATGACCACCACCCTACCGTCATCGGTTATC
TCGCAAAGAACTCAACAGACCTCCAGTCAGATGCCAGCCAGCTCTACGGCCCCTTCCTCC
CAGGAGACAGTGCAGCCCACGAGCCCGGCAACGGCATTGAGAACACCTACCCTGCCAGAG
ACCATGAGCTCCAGCCCCACAGCAGCATCAACTACCCACCGATACCCCAAAACACCTTCT
CCCACTGTGGCTCATGAGAGTAACTGGGCAAAGTGTGAGGATCTTGAGACACAGACACAG
AGTGAGAAGCAGCTCGTCCTGAACCTCACAGGAAACACCCTCTGTGCAGGGGGCGCTTCG
GATGAGAAATTGATCTCACTGATATGCCGAGCAGTCAAAGCCACCTTCAACCCGGCCCAA
GATAAGTGCGGCATACGGCTGGCATCTGTTCCAGGAAGTCAGACCGTGGTCGTCAAAGAA
ATCACTATTCACACTAAGCTCCCTGCCAAGGATGTGTACGAGCGGCTGAAGGACAAATGG
GATGAACTAAAGGAGGCAGGGGTCAGTGACATGAAGCTAGGGGACCAGGGGCCACCGGAG
GAGGCCGAGGACCGCTTCAGCATGCCCCTCATCATCACCATCGTCTGCATGGCATCATTC
CTGCTCCTCGTGGCGGCCCTCTATGGCTGCTGCCACCAGCGCCTCTCCCAGAGGAAGGAC
CAGCAGCGGCTAACAGAGGAGCTGCAGACAGTGGAGAATGGTTACCATGACAACCCAACA
CTGGAAGTGATGGAGACCTCTTCTGAGATGCAGGAGAAGAAGGTGGTCAGCCTCAACGGG
GAGCTGGGGGACAGCTGGATCGTCCCTCTGGACAACCTGACCAAGGACGACCTGGATGAG
GAGGAAGACACACACCTC

ORF Protein

Cloned ORF protein sequence for pF1KE2570 Download

>KIEE2570  526 aa
MRCALALSALLLLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDT
AQQSTVPTSKANEILASVKATTLGVSSDSPGTTTLAQQVSGPVNTTVARGGGSGNPTTTI
ESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTTDLTSTKAEHLTT
PHPTSPLSPRQPTSTHPVATPTSSGHDHLMKISSSSSTVAIPGYTFTSPGMTTTLPSSVI
SQRTQQTSSQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTPS
PTVAHESNWAKCEDLETQTQSEKQLVLNLTGNTLCAGGASDEKLISLICRAVKATFNPAQ
DKCGIRLASVPGSQTVVVKEITIHTKLPAKDVYERLKDKWDELKEAGVSDMKLGDQGPPE
EAEDRFSMPLIITIVCMASFLLLVAALYGCCHQRLSQRKDQQRLTEELQTVENGYHDNPT
LEVMETSSEMQEKKVVSLNGELGDSWIVPLDNLTKDDLDEEEDTHL

ORF+Vector

Nucleotide Sequence (with vector) for pF1KE2570 Download

>pF1KE2570  4691 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCGCTGCGCG
CTGGCGCTCTCGGCGCTGCTGCTACTGTTGTCAACGCCGCCGCTGCTGCCGTCGTCGCCG
TCGCCGTCGCCGTCGCCCTCCCAGAATGCAACCCAGACTACTACGGACTCATCTAACAAA
ACAGCACCGACTCCAGCATCCAGTGTCACCATCATGGCTACAGATACAGCCCAGCAGAGC
ACAGTCCCCACTTCCAAGGCCAACGAAATCTTGGCCTCAGTCAAGGCGACCACCCTTGGT
GTATCCAGTGACTCACCGGGGACTACAACCCTGGCTCAGCAAGTCTCAGGCCCAGTCAAC
ACTACCGTGGCTAGAGGAGGCGGCTCAGGCAACCCTACTACCACCATCGAGAGCCCCAAG
AGCACAAAAAGTGCAGACACCACTACAGTTGCAACCTCCACAGCCACAGCTAAACCTAAC
ACCACAAGCAGCCAGAATGGAGCAGAAGATACAACAAACTCTGGGGGGAAAAGCAGCCAC
AGTGTGACCACAGACCTCACATCCACTAAGGCAGAACATCTGACGACCCCTCACCCTACA
AGTCCACTTAGCCCCCGACAACCCACTTCGACGCATCCTGTGGCCACCCCAACAAGCTCG
GGACATGACCATCTTATGAAAATTTCAAGCAGTTCAAGCACTGTGGCTATCCCTGGCTAC
ACCTTCACAAGCCCGGGGATGACCACCACCCTACCGTCATCGGTTATCTCGCAAAGAACT
CAACAGACCTCCAGTCAGATGCCAGCCAGCTCTACGGCCCCTTCCTCCCAGGAGACAGTG
CAGCCCACGAGCCCGGCAACGGCATTGAGAACACCTACCCTGCCAGAGACCATGAGCTCC
AGCCCCACAGCAGCATCAACTACCCACCGATACCCCAAAACACCTTCTCCCACTGTGGCT
CATGAGAGTAACTGGGCAAAGTGTGAGGATCTTGAGACACAGACACAGAGTGAGAAGCAG
CTCGTCCTGAACCTCACAGGAAACACCCTCTGTGCAGGGGGCGCTTCGGATGAGAAATTG
ATCTCACTGATATGCCGAGCAGTCAAAGCCACCTTCAACCCGGCCCAAGATAAGTGCGGC
ATACGGCTGGCATCTGTTCCAGGAAGTCAGACCGTGGTCGTCAAAGAAATCACTATTCAC
ACTAAGCTCCCTGCCAAGGATGTGTACGAGCGGCTGAAGGACAAATGGGATGAACTAAAG
GAGGCAGGGGTCAGTGACATGAAGCTAGGGGACCAGGGGCCACCGGAGGAGGCCGAGGAC
CGCTTCAGCATGCCCCTCATCATCACCATCGTCTGCATGGCATCATTCCTGCTCCTCGTG
GCGGCCCTCTATGGCTGCTGCCACCAGCGCCTCTCCCAGAGGAAGGACCAGCAGCGGCTA
ACAGAGGAGCTGCAGACAGTGGAGAATGGTTACCATGACAACCCAACACTGGAAGTGATG
GAGACCTCTTCTGAGATGCAGGAGAAGAAGGTGGTCAGCCTCAACGGGGAGCTGGGGGAC
AGCTGGATCGTCCCTCTGGACAACCTGACCAAGGACGACCTGGATGAGGAGGAAGACACA
CACCTCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGG
CATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCAC
CGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTT
GCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTA
TCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGT
CCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTT
CTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCT
TCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAAC
TGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAG
ACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCC
GCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGAT
GCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTG
TCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACG
GGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTA
TTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTA
TCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTC
GACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTC
GATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGG
CTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTG
CCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGT
GTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGC
GGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGC
ATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGA
CCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCAC
AGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAA
CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCA
CAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGC
GTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATA
CCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTA
TCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCA
GCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGA
CTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGG
TGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGG
TATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGG
CAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAG
AAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAA
CGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGAT
CCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAA
ACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGG
TTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTG
GTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGC
GTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAA
ACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGAT
ACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAG
CGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGG
TAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG
CTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGA
GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGC
GGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG
ATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATG
TATCCGCTCAT