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SpecieshumanProduct IDFXC15879Cloning SiteSgfI-PmeIGenBank AccessionGeneKIEE5816SymbolTRPC7
Alias : TRP7Descriptiontransient receptor potential cation channel, subfamily C, member 7, transcript variant 1Original Clone IDoc95816
Length: 2586 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 862 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS47267.2 0 99.9 TRPC7 CCDS3725.1 0 81.0 TRPC3 CCDS47130.1 0 81.0 TRPC3 CCDS8311.1 0 73.8 TRPC6 CCDS54906.1 1.1e-211 92.8 TRPC7
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR005463 1 14 PR01648 Transient receptor potential channel IPR005463 294 307 PR01648 Transient receptor potential channel IPR002153 654 675 PR01097 Transient receptor potential channel IPR002153 676 689 PR01097 Transient receptor potential channel IPR002153 704 717 PR01097 Transient receptor potential channel IPR005463 726 742 PR01648 Transient receptor potential channel IPR005463 758 777 PR01648 Transient receptor potential channel IPR005463 845 862 PR01648 Transient receptor potential channel HMMPfam IPR013555 198 260 PF08344 Transient receptor potential II IPR005821 442 672 PF00520 Ion transport HMMSmart IPR002110 42 71 SM00248 Ankyrin repeat IPR002110 77 105 SM00248 Ankyrin repeat IPR002110 163 192 SM00248 Ankyrin repeat HMMTigr IPR004729 27 822 TIGR00870 Transient receptor potential channel
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 348 IAVKFLAVFGVSIGLPFLAIAYW 370 PRIMARY 23 2 385 FMKFVAHAVSFTIFLGLLVVNAS 407 SECONDARY 23 3 469 HLWNLLDFGMLSIFVASFTARFM 491 PRIMARY 23 4 538 IISEGLYAIAVVLSFSRIAYILP 560 PRIMARY 23 5 579 IFKFMVIFIMVFVAFMIGMFNLY 601 PRIMARY 23 6 649 GYVLYGVYNVTMVVVLLNMLIAM 671 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003296 848 602345,616410 81.0 97.2 NP_001124170 921 602345,616410 81.0 97.2 XP_011530520 920 602345,616410 81.0 97.2 XP_016864067 936 602345,616410 79.6 97.2 XP_011530519 937 602345,616410 79.6 97.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE5816 Download>KIEE5816 2586 bp ATGTTGAGGAACAGCACCTTCAAAAACATGCAGCGCCGGCACACAACGCTGAGGGAGAAG GGCCGTCGCCAGGCCATCCGGGATCCCGCCTACATGTTCAACGAGAAGGGCACCAGTCTG ACGCCCGAGGAGGAGCGCTTCCTGGACTCGGCTGAGTATGGCAACATCCCGGTGGTCCGG AAAATGCTGGAGGAGTCCAAGACCCTTAACTTCAACTGTGTGGACTACATGGGGCAGAAC GCTCTGCAGCTGGCCGTGGGCAACGAGCACCTAGAGGTCACGGAGCTGCTGCTGAAGAAG GAGAACCTGGCACGGGTGGGGGACGCGCTGCTGCTGGCCATCAGCAAGGGCTATGTGCGC ATCGTGGAGGCCATCCTCAACCACCCGGCCTTCGCGCAGGGCCAGCGCCTGACGCTCAGC CCGCTGGAACAGGAGCTGCGCGACGACGACTTCTATGCCTACGACGAGGACGGCACGCGC TTCTCCCACGACATCACGCCTATCATCCTGGCGGCGCACTGCCAGGAGTATGAGATCGTG CACATCCTGCTGCTCAAGGGCGCCCGCATCGAGCGGCCCCACGACTACTTCTGCAAGTGC AATGAGTGCACCGAGAAACAGCGGAAAGACTCCTTCAGCCACTCGCGCTCGCGCATGAAC GCCTACAAAGGACTGGCGAGTGCTGCCTACTTGTCCCTGTCCAGCGAAGACCCTGTCCTC ACCGCCCTGGAGCTCAGCAACGAGTTAGCCAGACTAGCCAACATTGAGACTGAATTTAAG AACGATTACAGGAAGTTATCTATGCAATGCAAGGATTTTGTAGTGGGCGTGCTGGACCTG TGCCGAGACACAGAAGAGGTGGAAGCAATTTTAAACGGTGATGTGAACTTCCAAGTCTGG TCCGACCACCACCGTCCAAGTCTGAGCCGGATCAAACTCGCCATTAAATATGAAGTCAAG AAGTTCGTTGCTCATCCTAACTGTCAGCAGCAATTGCTTACCATGTGGTATGAAAATCTC TCAGGCTTACGTCAACAGTCTATCGCTGTGAAATTCCTGGCTGTCTTTGGAGTCTCCATA GGCCTCCCTTTTCTCGCCATAGCCTATTGGATTGCTCCGTGCAGCAAGCTAGGACGAACC CTGAGGAGCCCTTTCATGAAGTTTGTAGCTCATGCAGTTTCTTTTACAATCTTCTTGGGA TTATTAGTTGTGAATGCATCTGACCGATTTGAAGGTGTTAAAACCCTGCCAAACGAAACC TTCACAGACTACCCAAAACAAATCTTCAGAGTGAAAACCACACAGTTCTCCTGGACAGAA ATGCTCATTATGAAGTGGGTCTTAGGAATGATTTGGTCCGAATGCAAGGAAATCTGGGAG GAGGGGCCACGGGAGTACGTGCTGCACTTGTGGAACCTGCTAGATTTCGGGATGCTGTCC ATCTTCGTGGCCTCCTTCACAGCACGCTTCATGGCCTTCCTGAAGGCCACGGAGGCACAG CTGTACGTGGACCAGCACGTGCAGGACGACACGCTGCACAATGTCTCGCTTCCGCCGGAA GTGGCATACTTCACCTACGCCAGGGACAAGTGGTGGCCTTCAGACCCTCAGATCATATCG GAAGGGCTCTACGCGATAGCCGTCGTGCTGAGCTTCTCTCGCATTGCATACATTCTGCCA GCCAACGAGAGTTTTGGGCCCCTGCAGATCTCGCTAGGGAGAACTGTGAAAGATATCTTC AAGTTCATGGTCATTTTCATCATGGTATTTGTGGCCTTCATGATTGGGATGTTCAACCTG TACTCTTACTACCGAGGTGCCAAATACAACCCAGCGTTTACAACGGTTGAAGAAAGTTTT AAAACTTTGTTTTGGTCCATATTCGGCTTATCTGAAGTAATCTCAGTGGTGCTGAAATAC GACCACAAATTCATCGAGAACATTGGCTACGTTCTCTACGGCGTTTATAACGTCACCATG GTGGTAGTGTTGCTCAACATGCTAATAGCCATGATAAACAACTCCTATCAGGAAATTGAG GAGGATGCAGATGTGGAATGGAAGTTCGCCCGAGCAAAACTCTGGCTGTCTTACTTTGAT GAAGGAAGAACTCTACCTGCTCCTTTTAATCTAGTGCCAAGTCCTAAATCATTTTATTAT CTCATAATGAGAATCAAGATGTGCCTCATAAAACTCTGCAAATCTAAGGCCAAAAGCTGT GAAAATGACCTTGAAATGGGCATGCTGAATTCCAAATTCAAGAAGACTCGCTACCAGGCT GGCATGAGGAATTCTGAAAATCTGACAGCAAATAACACTTTGAGCAAGCCCACCAGATAC CAGAAAATCATGAAACGGCTCATAAAAAGATACGTCCTGAAAGCCCAGGTGGACAGAGAA AATGACGAAGTCAATGAAGGCGAGCTGAAGGAAATCAAGCAAGATATCTCCAGCCTGCGC TATGAGCTTCTTGAGGAAAAATCTCAAGCTACTGGTGAGCTGGCAGACCTGATTCAACAA CTCAGCGAGAAGTTTGGAAAGAACTTAAACAAAGACCACCTGAGGGTGAACAAGGGCAAA GACATT
Cloned ORF protein sequence for pF1KE5816 Download>KIEE5816 862 aa MLRNSTFKNMQRRHTTLREKGRRQAIRDPAYMFNEKGTSLTPEEERFLDSAEYGNIPVVR KMLEESKTLNFNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARVGDALLLAISKGYVR IVEAILNHPAFAQGQRLTLSPLEQELRDDDFYAYDEDGTRFSHDITPIILAAHCQEYEIV HILLLKGARIERPHDYFCKCNECTEKQRKDSFSHSRSRMNAYKGLASAAYLSLSSEDPVL TALELSNELARLANIETEFKNDYRKLSMQCKDFVVGVLDLCRDTEEVEAILNGDVNFQVW SDHHRPSLSRIKLAIKYEVKKFVAHPNCQQQLLTMWYENLSGLRQQSIAVKFLAVFGVSI GLPFLAIAYWIAPCSKLGRTLRSPFMKFVAHAVSFTIFLGLLVVNASDRFEGVKTLPNET FTDYPKQIFRVKTTQFSWTEMLIMKWVLGMIWSECKEIWEEGPREYVLHLWNLLDFGMLS IFVASFTARFMAFLKATEAQLYVDQHVQDDTLHNVSLPPEVAYFTYARDKWWPSDPQIIS EGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNL YSYYRGAKYNPAFTTVEESFKTLFWSIFGLSEVISVVLKYDHKFIENIGYVLYGVYNVTM VVVLLNMLIAMINNSYQEIEEDADVEWKFARAKLWLSYFDEGRTLPAPFNLVPSPKSFYY LIMRIKMCLIKLCKSKAKSCENDLEMGMLNSKFKKTRYQAGMRNSENLTANNTLSKPTRY QKIMKRLIKRYVLKAQVDRENDEVNEGELKEIKQDISSLRYELLEEKSQATGELADLIQQ LSEKFGKNLNKDHLRVNKGKDI
Nucleotide Sequence (with vector) for pF1KE5816 Download>pF1KE5816 5699 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTTGAGGAAC AGCACCTTCAAAAACATGCAGCGCCGGCACACAACGCTGAGGGAGAAGGGCCGTCGCCAG GCCATCCGGGATCCCGCCTACATGTTCAACGAGAAGGGCACCAGTCTGACGCCCGAGGAG GAGCGCTTCCTGGACTCGGCTGAGTATGGCAACATCCCGGTGGTCCGGAAAATGCTGGAG GAGTCCAAGACCCTTAACTTCAACTGTGTGGACTACATGGGGCAGAACGCTCTGCAGCTG GCCGTGGGCAACGAGCACCTAGAGGTCACGGAGCTGCTGCTGAAGAAGGAGAACCTGGCA CGGGTGGGGGACGCGCTGCTGCTGGCCATCAGCAAGGGCTATGTGCGCATCGTGGAGGCC ATCCTCAACCACCCGGCCTTCGCGCAGGGCCAGCGCCTGACGCTCAGCCCGCTGGAACAG GAGCTGCGCGACGACGACTTCTATGCCTACGACGAGGACGGCACGCGCTTCTCCCACGAC ATCACGCCTATCATCCTGGCGGCGCACTGCCAGGAGTATGAGATCGTGCACATCCTGCTG CTCAAGGGCGCCCGCATCGAGCGGCCCCACGACTACTTCTGCAAGTGCAATGAGTGCACC GAGAAACAGCGGAAAGACTCCTTCAGCCACTCGCGCTCGCGCATGAACGCCTACAAAGGA CTGGCGAGTGCTGCCTACTTGTCCCTGTCCAGCGAAGACCCTGTCCTCACCGCCCTGGAG CTCAGCAACGAGTTAGCCAGACTAGCCAACATTGAGACTGAATTTAAGAACGATTACAGG AAGTTATCTATGCAATGCAAGGATTTTGTAGTGGGCGTGCTGGACCTGTGCCGAGACACA GAAGAGGTGGAAGCAATTTTAAACGGTGATGTGAACTTCCAAGTCTGGTCCGACCACCAC CGTCCAAGTCTGAGCCGGATCAAACTCGCCATTAAATATGAAGTCAAGAAGTTCGTTGCT CATCCTAACTGTCAGCAGCAATTGCTTACCATGTGGTATGAAAATCTCTCAGGCTTACGT CAACAGTCTATCGCTGTGAAATTCCTGGCTGTCTTTGGAGTCTCCATAGGCCTCCCTTTT CTCGCCATAGCCTATTGGATTGCTCCGTGCAGCAAGCTAGGACGAACCCTGAGGAGCCCT TTCATGAAGTTTGTAGCTCATGCAGTTTCTTTTACAATCTTCTTGGGATTATTAGTTGTG AATGCATCTGACCGATTTGAAGGTGTTAAAACCCTGCCAAACGAAACCTTCACAGACTAC CCAAAACAAATCTTCAGAGTGAAAACCACACAGTTCTCCTGGACAGAAATGCTCATTATG AAGTGGGTCTTAGGAATGATTTGGTCCGAATGCAAGGAAATCTGGGAGGAGGGGCCACGG GAGTACGTGCTGCACTTGTGGAACCTGCTAGATTTCGGGATGCTGTCCATCTTCGTGGCC TCCTTCACAGCACGCTTCATGGCCTTCCTGAAGGCCACGGAGGCACAGCTGTACGTGGAC CAGCACGTGCAGGACGACACGCTGCACAATGTCTCGCTTCCGCCGGAAGTGGCATACTTC ACCTACGCCAGGGACAAGTGGTGGCCTTCAGACCCTCAGATCATATCGGAAGGGCTCTAC GCGATAGCCGTCGTGCTGAGCTTCTCTCGCATTGCATACATTCTGCCAGCCAACGAGAGT TTTGGGCCCCTGCAGATCTCGCTAGGGAGAACTGTGAAAGATATCTTCAAGTTCATGGTC ATTTTCATCATGGTATTTGTGGCCTTCATGATTGGGATGTTCAACCTGTACTCTTACTAC CGAGGTGCCAAATACAACCCAGCGTTTACAACGGTTGAAGAAAGTTTTAAAACTTTGTTT TGGTCCATATTCGGCTTATCTGAAGTAATCTCAGTGGTGCTGAAATACGACCACAAATTC ATCGAGAACATTGGCTACGTTCTCTACGGCGTTTATAACGTCACCATGGTGGTAGTGTTG CTCAACATGCTAATAGCCATGATAAACAACTCCTATCAGGAAATTGAGGAGGATGCAGAT GTGGAATGGAAGTTCGCCCGAGCAAAACTCTGGCTGTCTTACTTTGATGAAGGAAGAACT CTACCTGCTCCTTTTAATCTAGTGCCAAGTCCTAAATCATTTTATTATCTCATAATGAGA ATCAAGATGTGCCTCATAAAACTCTGCAAATCTAAGGCCAAAAGCTGTGAAAATGACCTT GAAATGGGCATGCTGAATTCCAAATTCAAGAAGACTCGCTACCAGGCTGGCATGAGGAAT TCTGAAAATCTGACAGCAAATAACACTTTGAGCAAGCCCACCAGATACCAGAAAATCATG AAACGGCTCATAAAAAGATACGTCCTGAAAGCCCAGGTGGACAGAGAAAATGACGAAGTC AATGAAGGCGAGCTGAAGGAAATCAAGCAAGATATCTCCAGCCTGCGCTATGAGCTTCTT GAGGAAAAATCTCAAGCTACTGGTGAGCTGGCAGACCTGATTCAACAACTCAGCGAGAAG TTTGGAAAGAACTTAAACAAAGACCACCTGAGGGTGAACAAGGGCAAAGACATTGTTTAA ACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGA TCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATA ACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGG AACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAG CCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCA GTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCG CTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTG CCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTC TTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGG TCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAG AGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTC CGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTG AATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGC GCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTG CCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCT GATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCG AAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGAT CTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGT ATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATG GTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGC TATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCT GACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTAT CGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGA CGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGA TAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGC CGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACG CTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGG AAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTT TCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGT GTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTG CGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACT GGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTT CTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCT GCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCAC CGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATT TCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACG TTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTC CGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAAT GGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTAT TCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCAT TTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGG GATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTC CGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATC AGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCC ACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC TCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG ACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATC CGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCC CGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTG CGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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