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SpecieshumanProduct IDFXC11776Cloning SiteSgfI-PmeIGenBank AccessionGeneKIEE2267SymbolNSMAF
Alias : FAN, GRAMD5Descriptionneutral sphingomyelinase (N-SMase) activation associated factor, transcript variant 2Original Clone IDcs03367
Length: 2844 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 948 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS47864.1 0 100.0 NSMAF CCDS6173.1 0 100.0 NSMAF CCDS58928.1 8e-42 30.6 LRBA CCDS3773.1 8e-42 30.7 LRBA CCDS3609.1 1.3e-41 33.7 WDFY3
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR004182 212 277 PF02893 GRAM IPR000409 334 606 PF02138 BEACH domain IPR019781 657 689 PF00400 WD40 repeat IPR019781 740 771 PF00400 WD40 repeat IPR019781 792 822 PF00400 WD40 repeat IPR019781 830 863 PF00400 WD40 repeat IPR019781 913 945 PF00400 WD40 repeat HMMSmart IPR004182 207 278 SM00568 GRAM IPR001680 650 689 SM00320 WD40 repeat IPR001680 692 731 SM00320 WD40 repeat IPR001680 734 771 SM00320 WD40 repeat IPR001680 784 822 SM00320 WD40 repeat IPR001680 825 864 SM00320 WD40 repeat IPR001680 867 903 SM00320 WD40 repeat IPR001680 906 945 SM00320 WD40 repeat ProfileScan IPR000409 321 606 PS50197 BEACH domain IPR017986 657 948 PS50294 WD40-repeat-containing domain IPR019782 741 771 PS50082 WD40 repeat 2 IPR019782 790 831 PS50082 WD40 repeat 2 IPR019782 832 873 PS50082 WD40 repeat 2 IPR019782 913 948 PS50082 WD40 repeat 2
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001138244 948 603043 100.0 100.0 NP_003571 917 603043 100.0 94.6 NP_001186211 2851 606453,614700 30.6 81.2 NP_001351834 2852 606453,614700 30.5 81.2 NP_006717 2863 606453,614700 30.7 82.3 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE2267 Download>KIEE2267 2844 bp ATGACGGGCCAGGCCAGATTCCACCGCGGAGCCGAGGCATGCCGAGCTATCCGGCAGTGC AGGTCCCGGCGGCCGCGGGCAGCTCACCCGGAAGGCCGCGCGGGGTCCGGGCGTGGATCC CGGCACGCGAGCCCGGGCGTTCGCAGGGGAGGATTTTCCTTGCTGCTGCTTAACTTGGAG GAGTACTACTTTGAACAGCATAGAGCCAATCACATTTTGCACAAGGGCAGTCACCATGAA AGGAAAATCAGAGGCTCCTTAAAAATATGTTCAAAATCGGTGATTTTTGAACCAGATTCA ATATCCCAGCCCATCATCAAGATTCCTTTGAGAGACTGTATAAAAATAGGAAAGCATGGA GAAAATGGAGCCAATAGACACTTCACAAAGGCAAAATCTGGGGGTATTTCACTCATTTTC AGTCAGGTATATTTCATTAAAGAACATAATGTTGTTGCACCATATAAAATAGAAAGGGGC AAAATGGAATATGTTTTTGAATTGGATGTTCCCGGGAAAGTGGAAGATGTTGTGGAGACG TTGCTTCAGCTTCACAGAGCATCCTGCCTTGACAAATTGGGTGACCAAACCGCCATGATA ACAGCTATTTTGCAGTCTCGTTTAGCTAGAACATCATTTGACAAAAACAGGTTCCAAAAC ATTTCTGAAAAGCTGCACATGGAATGCAAAGCAGAAATGGTGACGCCTCTGGTGACTAAT CCTGGACACGTGTGCATCACGGACACAAACCTGTATTTTCAGCCCCTCAACGGCTACCCG AAACCTGTGGTCCAGATAACACTCCAAGATGTCCGCCGCATCTACAAAAGGAGGCACGGC CTCATGCCTCTGGGCTTGGAAGTATTTTGCACAGAAGATGATCTGTGTTCCGACATCTAC CTAAAGTTCTATGAACCTCAAGATAGAGATGATCTCTATTTTTACATTGCCACATACCTA GAGCACCATGTGGCGGAGCACACTGCTGAGAGCTACATGCTGCAGTGGCAGCGTGGACAC CTTTCCAACTATCAGTACCTCCTTCACCTCAACAACCTGGCCGACCGCAGCTGCAACGAC CTCTCCCAGTACCCTGTGTTTCCATGGATAATACATGATTATTCCAGCTCAGAACTAGAT TTGTCAAATCCAGGAACCTTCCGGGATCTCAGTAAGCCAGTAGGGGCCCTAAATAAGGAA CGGCTGGAGAGACTACTGACACGCTACCAGGAAATGCCTGAACCAAAGTTCATGTATGGG AGTCACTACTCTTCCCCGGGTTATGTACTTTTTTATCTTGTTAGGATTGCACCAGAGTAT ATGCTGTGCCTGCAGAATGGAAGATTTGATAATGCAGATAGAATGTTCAACAGTATTGCA GAAACTTGGAAAAACTGTCTGGATGGTGCAACGGATTTTAAAGAGTTAATTCCAGAATTC TATGGTGATGATGTGAGCTTTCTAGTCAATAGCCTGAAGTTGGATTTGGGAAAGAGACAA GGAGGACAGATGGTTGACGATGTGGAGCTTCCCCCTTGGGCTTCCAGTCCCGAGGACTTT CTCCAGAAGAGCAAAGATGCATTGGAAAGCAATTATGTGTCTGAACACCTTCACGAGTGG ATTGATCTAATATTTGGCTACAAACAAAAAGGGAGTGATGCAGTTGGGGCCCATAATGTA TTTCATCCCCTGACCTATGAAGGAGGTGTAGACTTGAACAGCATCCAGGATCCTGATGAG AAGGTAGCCATGCTTACGCAAATCTTGGAATTTGGGCAGACACCAAAACAACTATTTGTG ACACCACATCCTCGAAGGATCACCCCAAAGTTTAAAAGTTTGTCCCAGACCTCCAGTTAT AATGCTTCTATGGCAGATTCCCCAGGTGAAGAGTCTTTTGAAGACCTGACCGAAGAAAGC AAAACACTGGCCTGGAATAACATCACCAAACTGCAGTTACACGAGCACTATAAAATCCAC AAAGAAGCAGTTACTGGAATCACGGTCTCTCGCAATGGATCTTCAGTATTCACAACATCC CAAGATTCCACCTTGAAGATGTTTTCTAAAGAATCAAAAATGCTACAAAGAAGTATATCA TTTTCAAATATGGCTTTATCGTCTTGTTTACTTTTACCAGGAGATGCCACTGTCATAACT TCTTCATGGGATAATAATGTCTATTTTTATTCCATAGCATTTGGAAGACGCCAGGACACG TTAATGGGACATGATGATGCTGTTAGTAAGATCTGTTGGCATGACAACAGGCTATATTCT GCATCGTGGGACTCTACAGTGAAGGTGTGGTCTGGTGTTCCTGCAGAGATGCCAGGCACC AAAAGACACCACTTTGACTTGCTGGCCGAGCTGGAACATGATGTCAGTGTAGATACAATC AGTTTAAATGCTGCAAGCACACTGTTAGTTTCCGGCACCAAAGAAGGCACAGTGAATATT TGGGACCTCACAACGGCCACCTTAATGCACCAGATTCCATGCCATTCAGGGATTGTATGT GACACTGCTTTTAGCCCAGATAGTCGCCATGTCCTCAGCACAGGAACAGATGGCTGTCTT AATGTCATTGATGTGCAGACAGGAATGCTCATCTCCTCCATGACATCAGATGAGCCCCAG AGGTGCTTTGTCTGGGATGGAAATTCCGTTTTATCTGGCAGTCAGTCTGGTGAACTGCTC GTTTGGGACCTCCTTGGAGCAAAAATCAGTGAGAGAATACAGGGCCACACAGGTGCTGTG ACATGTATATGGATGAATGAACAGTGTAGCAGTATCATCACAGGAGGGGAAGACAGACAA ATTATATTCTGGAAATTGCAGTAT
Cloned ORF protein sequence for pF1KE2267 Download>KIEE2267 948 aa MTGQARFHRGAEACRAIRQCRSRRPRAAHPEGRAGSGRGSRHASPGVRRGGFSLLLLNLE EYYFEQHRANHILHKGSHHERKIRGSLKICSKSVIFEPDSISQPIIKIPLRDCIKIGKHG ENGANRHFTKAKSGGISLIFSQVYFIKEHNVVAPYKIERGKMEYVFELDVPGKVEDVVET LLQLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECKAEMVTPLVTN PGHVCITDTNLYFQPLNGYPKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIY LKFYEPQDRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCND LSQYPVFPWIIHDYSSSELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYG SHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEF YGDDVSFLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHEW IDLIFGYKQKGSDAVGAHNVFHPLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFV TPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEESKTLAWNNITKLQLHEHYKIH KEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDATVIT SSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSGVPAEMPGT KRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPCHSGIVC DTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVWDGNSVLSGSQSGELL VWDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWKLQY
Nucleotide Sequence (with vector) for pF1KE2267 Download>pF1KE2267 5957 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGACGGGCCAG GCCAGATTCCACCGCGGAGCCGAGGCATGCCGAGCTATCCGGCAGTGCAGGTCCCGGCGG CCGCGGGCAGCTCACCCGGAAGGCCGCGCGGGGTCCGGGCGTGGATCCCGGCACGCGAGC CCGGGCGTTCGCAGGGGAGGATTTTCCTTGCTGCTGCTTAACTTGGAGGAGTACTACTTT GAACAGCATAGAGCCAATCACATTTTGCACAAGGGCAGTCACCATGAAAGGAAAATCAGA GGCTCCTTAAAAATATGTTCAAAATCGGTGATTTTTGAACCAGATTCAATATCCCAGCCC ATCATCAAGATTCCTTTGAGAGACTGTATAAAAATAGGAAAGCATGGAGAAAATGGAGCC AATAGACACTTCACAAAGGCAAAATCTGGGGGTATTTCACTCATTTTCAGTCAGGTATAT TTCATTAAAGAACATAATGTTGTTGCACCATATAAAATAGAAAGGGGCAAAATGGAATAT GTTTTTGAATTGGATGTTCCCGGGAAAGTGGAAGATGTTGTGGAGACGTTGCTTCAGCTT CACAGAGCATCCTGCCTTGACAAATTGGGTGACCAAACCGCCATGATAACAGCTATTTTG CAGTCTCGTTTAGCTAGAACATCATTTGACAAAAACAGGTTCCAAAACATTTCTGAAAAG CTGCACATGGAATGCAAAGCAGAAATGGTGACGCCTCTGGTGACTAATCCTGGACACGTG TGCATCACGGACACAAACCTGTATTTTCAGCCCCTCAACGGCTACCCGAAACCTGTGGTC CAGATAACACTCCAAGATGTCCGCCGCATCTACAAAAGGAGGCACGGCCTCATGCCTCTG GGCTTGGAAGTATTTTGCACAGAAGATGATCTGTGTTCCGACATCTACCTAAAGTTCTAT GAACCTCAAGATAGAGATGATCTCTATTTTTACATTGCCACATACCTAGAGCACCATGTG GCGGAGCACACTGCTGAGAGCTACATGCTGCAGTGGCAGCGTGGACACCTTTCCAACTAT CAGTACCTCCTTCACCTCAACAACCTGGCCGACCGCAGCTGCAACGACCTCTCCCAGTAC CCTGTGTTTCCATGGATAATACATGATTATTCCAGCTCAGAACTAGATTTGTCAAATCCA GGAACCTTCCGGGATCTCAGTAAGCCAGTAGGGGCCCTAAATAAGGAACGGCTGGAGAGA CTACTGACACGCTACCAGGAAATGCCTGAACCAAAGTTCATGTATGGGAGTCACTACTCT TCCCCGGGTTATGTACTTTTTTATCTTGTTAGGATTGCACCAGAGTATATGCTGTGCCTG CAGAATGGAAGATTTGATAATGCAGATAGAATGTTCAACAGTATTGCAGAAACTTGGAAA AACTGTCTGGATGGTGCAACGGATTTTAAAGAGTTAATTCCAGAATTCTATGGTGATGAT GTGAGCTTTCTAGTCAATAGCCTGAAGTTGGATTTGGGAAAGAGACAAGGAGGACAGATG GTTGACGATGTGGAGCTTCCCCCTTGGGCTTCCAGTCCCGAGGACTTTCTCCAGAAGAGC AAAGATGCATTGGAAAGCAATTATGTGTCTGAACACCTTCACGAGTGGATTGATCTAATA TTTGGCTACAAACAAAAAGGGAGTGATGCAGTTGGGGCCCATAATGTATTTCATCCCCTG ACCTATGAAGGAGGTGTAGACTTGAACAGCATCCAGGATCCTGATGAGAAGGTAGCCATG CTTACGCAAATCTTGGAATTTGGGCAGACACCAAAACAACTATTTGTGACACCACATCCT CGAAGGATCACCCCAAAGTTTAAAAGTTTGTCCCAGACCTCCAGTTATAATGCTTCTATG GCAGATTCCCCAGGTGAAGAGTCTTTTGAAGACCTGACCGAAGAAAGCAAAACACTGGCC TGGAATAACATCACCAAACTGCAGTTACACGAGCACTATAAAATCCACAAAGAAGCAGTT ACTGGAATCACGGTCTCTCGCAATGGATCTTCAGTATTCACAACATCCCAAGATTCCACC TTGAAGATGTTTTCTAAAGAATCAAAAATGCTACAAAGAAGTATATCATTTTCAAATATG GCTTTATCGTCTTGTTTACTTTTACCAGGAGATGCCACTGTCATAACTTCTTCATGGGAT AATAATGTCTATTTTTATTCCATAGCATTTGGAAGACGCCAGGACACGTTAATGGGACAT GATGATGCTGTTAGTAAGATCTGTTGGCATGACAACAGGCTATATTCTGCATCGTGGGAC TCTACAGTGAAGGTGTGGTCTGGTGTTCCTGCAGAGATGCCAGGCACCAAAAGACACCAC TTTGACTTGCTGGCCGAGCTGGAACATGATGTCAGTGTAGATACAATCAGTTTAAATGCT GCAAGCACACTGTTAGTTTCCGGCACCAAAGAAGGCACAGTGAATATTTGGGACCTCACA ACGGCCACCTTAATGCACCAGATTCCATGCCATTCAGGGATTGTATGTGACACTGCTTTT AGCCCAGATAGTCGCCATGTCCTCAGCACAGGAACAGATGGCTGTCTTAATGTCATTGAT GTGCAGACAGGAATGCTCATCTCCTCCATGACATCAGATGAGCCCCAGAGGTGCTTTGTC TGGGATGGAAATTCCGTTTTATCTGGCAGTCAGTCTGGTGAACTGCTCGTTTGGGACCTC CTTGGAGCAAAAATCAGTGAGAGAATACAGGGCCACACAGGTGCTGTGACATGTATATGG ATGAATGAACAGTGTAGCAGTATCATCACAGGAGGGGAAGACAGACAAATTATATTCTGG AAATTGCAGTATGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACC TGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGC TGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGG TTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTC TAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTC CCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACT GGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCG TGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAA GTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGAT CAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCT CCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGC TCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACC GACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCC ACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGG CTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAG AAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGC CCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGT CTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTC GCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCC TGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGG CTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAG CTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCG CAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCG AAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTT ATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGC CAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGA GCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATA CCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTAC CGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTG TAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCC CGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAG ACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGT AGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGT ATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTG ATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTAC GCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCA GTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCAC CTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGAT GGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACC CTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTT CGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAG CGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCG AGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAG CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGG CAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGC CGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC GAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC TCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC TGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCA AATATGTATCCGCTCAT
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