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SpecieshumanProduct IDFXC11011Cloning SiteSgfI-PmeIGeneKIEE0392SymbolPCDHGA4
Alias : PCDH-GAMMA-A4Descriptionprotocadherin gamma subfamily A, 4Original Clone IDoc01092
Length: 2793 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 931 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS58979.2 0 100.0 PCDHGA4 CCDS75331.1 0 100.0 PCDHGA4 CCDS47290.1 0 77.8 PCDHGA3 CCDS54926.1 0 77.1 PCDHGA6 CCDS54925.1 0 76.7 PCDHGA5
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 417 429 PR00205 Cadherin IPR002126 431 450 PR00205 Cadherin IPR002126 450 463 PR00205 Cadherin IPR002126 510 536 PR00205 Cadherin IPR002126 544 561 PR00205 Cadherin HMMPfam IPR013164 29 112 PF08266 Cadherin IPR002126 139 230 PF00028 Cadherin IPR002126 247 338 PF00028 Cadherin IPR002126 355 442 PF00028 Cadherin IPR002126 457 552 PF00028 Cadherin IPR002126 582 664 PF00028 Cadherin HMMSmart IPR002126 45 131 SM00112 Cadherin IPR002126 155 240 SM00112 Cadherin IPR002126 264 345 SM00112 Cadherin IPR002126 369 450 SM00112 Cadherin IPR002126 474 560 SM00112 Cadherin IPR002126 591 669 SM00112 Cadherin ProfileScan IPR002126 75 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 347 PS50268 Cadherin IPR002126 348 452 PS50268 Cadherin IPR002126 453 567 PS50268 Cadherin IPR002126 579 682 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 9 DHTRLLQICLLLGVLVEIRAEQI 31 SECONDARY 23 2 691 LYLVVAVAAVSCVFLAFVTVLLA 713 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061740 962 606291 100.0 100.0 NP_114442 851 606291 100.0 86.7 NP_061739 932 606290 77.8 98.7 NP_061742 932 606293 77.1 99.8 NP_061741 931 606292 76.7 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0392 Download>KIEE0392 2793 bp ATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGATCTGCCTTCTCCTG GGGGTTCTGGTGGAAATCAGGGCCGAACAGATTCTCTACTCGGTGTTTGAGGAGCAGGAA GAAGGCTCAGTGGTGGGCAACATCGCCAAGGACCTGGGGTTGGCGCCCCGGGAGCTGGCG GAGCGCGGAGTCCGCATCGTCTCCAGAGGTAGGACGCAGCTTTTCGCCCTGAACCCGCGC AGCGGCACCTTGGTCACCGCGGGTAGGATAGACAGGGAGGAGCTCTGCGACAGATCTCCA AACTGTGTGACAAACCTGGAGATTCTTCTAGAAGATACAGTGAAGATTTTGCGGGTAGAG GTGGAAATAATCGATGTTAATGATAACCCACCCAGTTTTGGGACAGAACAGAGGGAAATA AAAGTTGCTGAAAATGAAAATCCTGGGGCAAGATTTCCTCTTCCTGAAGCTTTTGATCCG GATGTAGGTGTAAACTCCCTGCAGGGTTACCAGCTCAACTCAAACGGTTACTTTTCCCTG GACGTGCAAAGTGGGGCCGATGGGATTAAGTACCCAGAGCTGGTGCTGGAACGCGCTCTA GATCGCGAGGAAGAGGCGGTTCACCACCTCGTTCTCACGGCCTTCGATGGAGGTGACCCG GTTCGCTCTGGCACTGCCAGGATTCTCATAATACTTGTGGATACCAACGATAATGCTCCC GTGTTCACTCAGCCCGAGTACCACGTAAGTGTTCGTGAGAACGTTCCTGTAGGCACTCGG CTACTCACCGTAAAAGCCACTGATCCAGATGAAGGAGCCAATGGAGACGTGACGTATTCT TTCCGGAAAGTAAGAGACAAAATATCACAGCTATTTCAGTTGAATTCTCTGAGTGGGGAT ATAACAATATTGGGGGGTCTAGATTATGAGGACTCTGGATTCTATGACATAGATGTAGAA GCCCATGATGGGCCTGGTCTCCGAGCTAGAAGCAAGGTACTGGTGACAGTTCTGGATGAA AATGACAACGCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCT TCCCCGGGTACAGTAATTGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGC CTAGTCACATGTTCTATTCCAGATAATCTGCCATTCACACTTGAAAAGACCTATGGAAAT TATTATCGGTTGTTGACACACAGAACACTGGACAGGGAAGAAGTCTCAGAATATAACATC ACTGTAACTGCCACTGACCAGGGAACTCCTCCACTGTCTACAGAAACTCATATTTCACTG CAAGTGATGGACATCAATGACAACCCACCCACTTTCCCTCATGCTTCCTACTCTGCTTAC ATTCCTGAAAACAACCCCAGAGGAGCCTCCATCTTATCTATGACTGCTCAAGACCCTGAC AGTGGTGACAATGCCCGAATCACTTACTCCCTGGCCGAAGACACCTTCCAGGGTGCACCT CTGTCCTCCTATGTCTCCATCAACTCCAATACAGGGATCCTATATGCTCTTTGCTCCTTC GACTATGAGCAGTTTAGAGACCTGCAGCTGCTGATGACAGCCAGTGACAGTGGAGACCCT CCACTCAGCAGCAATGTGTCACTGAGCCTCTTTGTGCTGGACCAGAACGACAATGTCCCT GAGATCCTGTACCCCACCTTCCCTACTGATGGCTCCACTGGTGTGGAGCTGGCACCCCGC TCCGCAGATTCCGGCTACCTGGTGACCAAAGTGGTGGCAGTGGACAGAGACTCAGGTCAG AATGCCTGGCTGTCCTACAGCCTACTCAAGTCCAGCGAGCCGGGACTATTTGCAGTGGGG CTGCACACAGGCGAGGTGCGCACCGCACGGGCCCTGCTGGACAGAGACGCGCTCAAGCAG AGGCTTGTAGTGGTCGTCCAGGACCATGGCCAGCCCCCTCTCTCGGCCACCGTCACACTC ACTGTGGCTGTGGCCGACAGCATCCCAGATGTCCTGGCTGACTTGGGCAGCCTCAAGCCT TCAGCAGACCCAGACGACTCGGGCCTCACACTCTATCTCGTGGTGGCAGTGGCCGCTGTC TCCTGCGTCTTCCTGGCTTTTGTCACGGTGCTGCTAGCACTCAAGCTGAGACGCTGGCAC AAGTCACGCCTGCTTCACGCTGAAGGCAGCAGGTTGGCAGGTGTGCCTGCCTCGCACTTT GTGGGCGTGGACGGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACC GCGGACTCGCGGAAGAGTCACCTGATCTTCTCCCAACCCAGCTATGCAGACACGCTCATC AGCCGGGAGAGTTGTGAGAAAAGCGAGCCTCTTCTGATAACTCAGGATTTACTTGAAACA AAAGGAGACCCTAATCTTCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCC CAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAAC CAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGAT GGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCC CAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAAT GCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGC AACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAG
Cloned ORF protein sequence for pF1KE0392 Download>KIEE0392 931 aa MAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELA ERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVE VEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSL DVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAP VFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGD ITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESS SPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNI TVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPD SGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDP PLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQ NAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTL TVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWH KSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLI SRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Nucleotide Sequence (with vector) for pF1KE0392 Download>pF1KE0392 5906 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGGCGCCT CCTGCTCGCCCAGACCACACCCGGCTGCTCCAGATCTGCCTTCTCCTGGGGGTTCTGGTG GAAATCAGGGCCGAACAGATTCTCTACTCGGTGTTTGAGGAGCAGGAAGAAGGCTCAGTG GTGGGCAACATCGCCAAGGACCTGGGGTTGGCGCCCCGGGAGCTGGCGGAGCGCGGAGTC CGCATCGTCTCCAGAGGTAGGACGCAGCTTTTCGCCCTGAACCCGCGCAGCGGCACCTTG GTCACCGCGGGTAGGATAGACAGGGAGGAGCTCTGCGACAGATCTCCAAACTGTGTGACA AACCTGGAGATTCTTCTAGAAGATACAGTGAAGATTTTGCGGGTAGAGGTGGAAATAATC GATGTTAATGATAACCCACCCAGTTTTGGGACAGAACAGAGGGAAATAAAAGTTGCTGAA AATGAAAATCCTGGGGCAAGATTTCCTCTTCCTGAAGCTTTTGATCCGGATGTAGGTGTA AACTCCCTGCAGGGTTACCAGCTCAACTCAAACGGTTACTTTTCCCTGGACGTGCAAAGT GGGGCCGATGGGATTAAGTACCCAGAGCTGGTGCTGGAACGCGCTCTAGATCGCGAGGAA GAGGCGGTTCACCACCTCGTTCTCACGGCCTTCGATGGAGGTGACCCGGTTCGCTCTGGC ACTGCCAGGATTCTCATAATACTTGTGGATACCAACGATAATGCTCCCGTGTTCACTCAG CCCGAGTACCACGTAAGTGTTCGTGAGAACGTTCCTGTAGGCACTCGGCTACTCACCGTA AAAGCCACTGATCCAGATGAAGGAGCCAATGGAGACGTGACGTATTCTTTCCGGAAAGTA AGAGACAAAATATCACAGCTATTTCAGTTGAATTCTCTGAGTGGGGATATAACAATATTG GGGGGTCTAGATTATGAGGACTCTGGATTCTATGACATAGATGTAGAAGCCCATGATGGG CCTGGTCTCCGAGCTAGAAGCAAGGTACTGGTGACAGTTCTGGATGAAAATGACAACGCA CCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCTTCCCCGGGTACA GTAATTGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAGTCACATGT TCTATTCCAGATAATCTGCCATTCACACTTGAAAAGACCTATGGAAATTATTATCGGTTG TTGACACACAGAACACTGGACAGGGAAGAAGTCTCAGAATATAACATCACTGTAACTGCC ACTGACCAGGGAACTCCTCCACTGTCTACAGAAACTCATATTTCACTGCAAGTGATGGAC ATCAATGACAACCCACCCACTTTCCCTCATGCTTCCTACTCTGCTTACATTCCTGAAAAC AACCCCAGAGGAGCCTCCATCTTATCTATGACTGCTCAAGACCCTGACAGTGGTGACAAT GCCCGAATCACTTACTCCCTGGCCGAAGACACCTTCCAGGGTGCACCTCTGTCCTCCTAT GTCTCCATCAACTCCAATACAGGGATCCTATATGCTCTTTGCTCCTTCGACTATGAGCAG TTTAGAGACCTGCAGCTGCTGATGACAGCCAGTGACAGTGGAGACCCTCCACTCAGCAGC AATGTGTCACTGAGCCTCTTTGTGCTGGACCAGAACGACAATGTCCCTGAGATCCTGTAC CCCACCTTCCCTACTGATGGCTCCACTGGTGTGGAGCTGGCACCCCGCTCCGCAGATTCC GGCTACCTGGTGACCAAAGTGGTGGCAGTGGACAGAGACTCAGGTCAGAATGCCTGGCTG TCCTACAGCCTACTCAAGTCCAGCGAGCCGGGACTATTTGCAGTGGGGCTGCACACAGGC GAGGTGCGCACCGCACGGGCCCTGCTGGACAGAGACGCGCTCAAGCAGAGGCTTGTAGTG GTCGTCCAGGACCATGGCCAGCCCCCTCTCTCGGCCACCGTCACACTCACTGTGGCTGTG GCCGACAGCATCCCAGATGTCCTGGCTGACTTGGGCAGCCTCAAGCCTTCAGCAGACCCA GACGACTCGGGCCTCACACTCTATCTCGTGGTGGCAGTGGCCGCTGTCTCCTGCGTCTTC CTGGCTTTTGTCACGGTGCTGCTAGCACTCAAGCTGAGACGCTGGCACAAGTCACGCCTG CTTCACGCTGAAGGCAGCAGGTTGGCAGGTGTGCCTGCCTCGCACTTTGTGGGCGTGGAC GGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACCGCGGACTCGCGG AAGAGTCACCTGATCTTCTCCCAACCCAGCTATGCAGACACGCTCATCAGCCGGGAGAGT TGTGAGAAAAGCGAGCCTCTTCTGATAACTCAGGATTTACTTGAAACAAAAGGAGACCCT AATCTTCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGC ACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACA GAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACC CTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTG CAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACC AACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAG TCGGGCAAGAAGGAGAAGAAGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTA GAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGA GTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGT CTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAAC CGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCT TGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTT CTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTT GCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAG CCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCA AGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCAC GCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACA ATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTT GTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCG TGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGA AGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCT CCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCG GCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATG GAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCC GAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCAT GGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGAC TGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATT GCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCT CCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTC TGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGT AATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCA GCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCC CCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACT ATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCT GCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAG CTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCA CGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAA CCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGC GAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAG AAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGG TAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCA GCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTC TGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAG GATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTT CGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTG GCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCG GCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAAC GCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCG TAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGA TCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTT GCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACG CCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATC AAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG TGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC GGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGA AGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAA ATACATTCAAATATGTATCCGCTCAT
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