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SpecieshumanProduct IDFXC10769Cloning SiteSgfI-PmeIGeneKIEE0016SymbolTMTC4Descriptiontransmembrane and tetratricopeptide repeat containing 4, transcript variant 2Original Clone IDoc00716
Length: 2223 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 741 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS41904.1 0 100.0 TMTC4 CCDS9497.2 0 100.0 TMTC4 CCDS66575.1 0 85.0 TMTC4 CCDS53772.1 1.2e-66 36.4 TMTC1 CCDS8718.1 3.2e-61 35.1 TMTC1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR013618 290 368 PF08409 Domain of unknown function DUF1736 IPR013105 482 515 PF07719 Tetratricopeptide TPR2 IPR001440 550 582 PF00515 Tetratricopeptide TPR-1 HMMSmart IPR019734 482 515 SM00028 Tetratricopeptide repeat IPR019734 516 549 SM00028 Tetratricopeptide repeat IPR019734 550 583 SM00028 Tetratricopeptide repeat IPR019734 584 617 SM00028 Tetratricopeptide repeat IPR019734 618 651 SM00028 Tetratricopeptide repeat IPR019734 652 685 SM00028 Tetratricopeptide repeat IPR019734 686 719 SM00028 Tetratricopeptide repeat ProfileScan IPR013026 448 719 PS50293 Tetratricopeptide repeat-containing IPR019734 482 515 PS50005 Tetratricopeptide repeat IPR019734 516 549 PS50005 Tetratricopeptide repeat IPR019734 550 583 PS50005 Tetratricopeptide repeat IPR019734 584 617 PS50005 Tetratricopeptide repeat IPR019734 618 651 PS50005 Tetratricopeptide repeat IPR019734 652 685 PS50005 Tetratricopeptide repeat IPR019734 686 719 PS50005 Tetratricopeptide repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 14 SSVLPPFWAKLVVGSVAIVCFAR 36 PRIMARY 23 2 108 HVVNILLHSGISVLMVDVFSVLF 130 SECONDARY 23 3 167 AGVVGRADLLCALFFLLSFLGYC 189 PRIMARY 23 4 202 SSTFWVLLSIFLGAVAMLCKEQG 224 PRIMARY 23 5 228 LGLNAVFDILVIGKFNVLEIVQK 250 SECONDARY 23 6 275 LLTSGGAGMLYVRWRIMGTGPPA 297 SECONDARY 23 7 315 AVNYNYYYSLNAWLLLCPWWLCF 337 SECONDARY 23 8 347 IKSISDWRVIALAALWFCLIGLI 369 PRIMARY 23 9 383 ILTLGLGFLVIPFLPASNLFFRV 405 PRIMARY 23 10 412 RVLYLPSVGYCVLLTFGFGALSK 434 PRIMARY 23 11 441 LIAAVVLGILFINTLRCVLRSGE 463 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016875493 875 615855 38.5 94.7 NP_001180380 882 615855 36.4 94.7 NP_787057 774 615855 35.1 83.1 XP_005253556 944 615855 36.1 94.1 XP_016875494 813 615855 35.3 94.7 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0016 Download>KIEE0016 2223 bp ATGGCCGTGTTGGACACTGATTTGGATCACATTCTTCCATCTTCTGTTCTTCCTCCATTC TGGGCTAAGTTAGTAGTGGGATCGGTTGCCATTGTGTGTTTTGCACGCAGCTATGATGGA GACTTTGTCTTTGATGACTCAGAAGCTATTGTTAACAATAAGGACCTCCAAGCAGAAACG CCCCTGGGGGACCTGTGGCATCATGACTTCTGGGGCAGTAGACTGAGCAGCAACACCAGC CACAAGTCCTACCGGCCTCTCACCGTCCTGACTTTCAGGATTAACTACTACCTCTCGGGA GGCTTCCACCCCGTGGGCTTTCACGTGGTCAACATCCTCCTGCACAGTGGCATCTCTGTC CTCATGGTGGACGTCTTCTCGGTTCTGTTTGGCGGCCTGCAGTACACCAGTAAAGGCCGG AGGCTGCACCTCGCCCCCAGGGCGTCCCTGCTGGCCGCGCTGCTGTTTGCTGTCCATCCT GTGCACACCGAGTGTGTTGCTGGTGTTGTCGGCCGTGCAGACCTCCTGTGTGCCCTGTTC TTCTTGTTATCTTTCCTTGGCTACTGTAAAGCATTTAGAGAAAGTAACAAGGAGGGAGCG CATTCTTCCACCTTCTGGGTGCTGCTGAGTATCTTTCTGGGAGCAGTGGCCATGCTGTGC AAAGAGCAAGGGATCACTGTGCTGGGTTTAAATGCGGTATTTGACATCTTGGTGATAGGC AAATTCAATGTTCTGGAAATTGTCCAGAAGGTACTACATAAGGACAAGTCATTAGAGAAT CTCGGCATGCTCAGGAACGGGGGCCTCCTCTTCAGAATGACCCTGCTCACCTCTGGAGGG GCTGGGATGCTCTACGTGCGCTGGAGGATCATGGGCACGGGCCCGCCGGCCTTCACCGAG GTGGACAACCCGGCCTCCTTTGCTGACAGCATGCTGGTGAGGGCCGTAAACTACAATTAC TACTATTCATTGAATGCCTGGCTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCA ATGGGCTGCATCCCCCTCATTAAGTCCATCAGCGACTGGAGGGTAATTGCACTTGCAGCA CTCTGGTTCTGCCTAATTGGCCTGATATGCCAAGCCCTGTGCTCTGAAGACGGCCACAAG AGAAGGATCCTTACTCTGGGCCTGGGATTTCTCGTTATCCCATTTCTCCCCGCGAGTAAC CTGTTCTTCCGAGTGGGCTTCGTGGTCGCAGAGCGTGTCCTCTACCTCCCCAGCGTTGGG TACTGTGTGCTGCTGACTTTTGGATTCGGAGCCCTGAGCAAACATACCAAGAAAAAGAAA CTCATTGCCGCTGTCGTGCTGGGAATCTTATTCATCAACACGCTGAGATGTGTGCTGCGC AGCGGCGAGTGGCGGAGTGAGGAACAGCTTTTCAGAAGTGCTCTGTCTGTGTGTCCCCTC AATGCTAAGGTTCACTACAACATTGGCAAAAACCTGGCTGATAAAGGCAACCAGACAGCT GCCATCAGATACTACCGGGAAGCTGTAAGATTAAATCCCAAGTATGTTCATGCCATGAAT AATCTTGGAAATATCTTAAAAGAAAGGAATGAGCTACAGGAAGCTGAGGAGCTGCTGTCT TTGGCTGTTCAAATACAGCCAGACTTTGCCGCTGCGTGGATGAATCTAGGCATAGTGCAG AATAGCCTGAAACGGTTTGAAGCAGCAGAGCAAAGTTACCGGACAGCAATTAAACACAGA AGGAAATACCCAGACTGTTACTACAACCTCGGGCGTCTGTATGCAGATCTCAATCGCCAC GTGGATGCCTTGAATGCGTGGAGAAATGCCACCGTGCTGAAACCAGAGCACAGCCTGGCC TGGAACAACATGATTATACTCCTCGACAATACAGGTAATTTAGCCCAAGCTGAAGCAGTT GGAAGAGAGGCACTGGAATTAATACCTAATGATCACTCTCTCATGTTCTCGTTGGCAAAC GTGCTGGGGAAATCCCAGAAATACAAGGAATCTGAAGCTTTATTCCTCAAGGCAATTAAA GCAAATCCAAATGCTGCAAGTTACCATGGTAATTTGGCTGTGCTTTATCATCGTTGGGGA CATCTAGACTTGGCCAAGAAACACTATGAAATCTCCTTGCAGCTTGACCCCACGGCATCA GGAACTAAGGAGAATTACGGTCTGCTGAGAAGAAAGCTAGAACTAATGCAAAAGAAAGCT GTC
Cloned ORF protein sequence for pF1KE0016 Download>KIEE0016 741 aa MAVLDTDLDHILPSSVLPPFWAKLVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAET PLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGFHVVNILLHSGISV LMVDVFSVLFGGLQYTSKGRRLHLAPRASLLAALLFAVHPVHTECVAGVVGRADLLCALF FLLSFLGYCKAFRESNKEGAHSSTFWVLLSIFLGAVAMLCKEQGITVLGLNAVFDILVIG KFNVLEIVQKVLHKDKSLENLGMLRNGGLLFRMTLLTSGGAGMLYVRWRIMGTGPPAFTE VDNPASFADSMLVRAVNYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSISDWRVIALAA LWFCLIGLICQALCSEDGHKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSVG YCVLLTFGFGALSKHTKKKKLIAAVVLGILFINTLRCVLRSGEWRSEEQLFRSALSVCPL NAKVHYNIGKNLADKGNQTAAIRYYREAVRLNPKYVHAMNNLGNILKERNELQEAEELLS LAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRH VDALNAWRNATVLKPEHSLAWNNMIILLDNTGNLAQAEAVGREALELIPNDHSLMFSLAN VLGKSQKYKESEALFLKAIKANPNAASYHGNLAVLYHRWGHLDLAKKHYEISLQLDPTAS GTKENYGLLRRKLELMQKKAV
Nucleotide Sequence (with vector) for pF1KE0016 Download>pF1KE0016 5336 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCCGTGTTG GACACTGATTTGGATCACATTCTTCCATCTTCTGTTCTTCCTCCATTCTGGGCTAAGTTA GTAGTGGGATCGGTTGCCATTGTGTGTTTTGCACGCAGCTATGATGGAGACTTTGTCTTT GATGACTCAGAAGCTATTGTTAACAATAAGGACCTCCAAGCAGAAACGCCCCTGGGGGAC CTGTGGCATCATGACTTCTGGGGCAGTAGACTGAGCAGCAACACCAGCCACAAGTCCTAC CGGCCTCTCACCGTCCTGACTTTCAGGATTAACTACTACCTCTCGGGAGGCTTCCACCCC GTGGGCTTTCACGTGGTCAACATCCTCCTGCACAGTGGCATCTCTGTCCTCATGGTGGAC GTCTTCTCGGTTCTGTTTGGCGGCCTGCAGTACACCAGTAAAGGCCGGAGGCTGCACCTC GCCCCCAGGGCGTCCCTGCTGGCCGCGCTGCTGTTTGCTGTCCATCCTGTGCACACCGAG TGTGTTGCTGGTGTTGTCGGCCGTGCAGACCTCCTGTGTGCCCTGTTCTTCTTGTTATCT TTCCTTGGCTACTGTAAAGCATTTAGAGAAAGTAACAAGGAGGGAGCGCATTCTTCCACC TTCTGGGTGCTGCTGAGTATCTTTCTGGGAGCAGTGGCCATGCTGTGCAAAGAGCAAGGG ATCACTGTGCTGGGTTTAAATGCGGTATTTGACATCTTGGTGATAGGCAAATTCAATGTT CTGGAAATTGTCCAGAAGGTACTACATAAGGACAAGTCATTAGAGAATCTCGGCATGCTC AGGAACGGGGGCCTCCTCTTCAGAATGACCCTGCTCACCTCTGGAGGGGCTGGGATGCTC TACGTGCGCTGGAGGATCATGGGCACGGGCCCGCCGGCCTTCACCGAGGTGGACAACCCG GCCTCCTTTGCTGACAGCATGCTGGTGAGGGCCGTAAACTACAATTACTACTATTCATTG AATGCCTGGCTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGCATC CCCCTCATTAAGTCCATCAGCGACTGGAGGGTAATTGCACTTGCAGCACTCTGGTTCTGC CTAATTGGCCTGATATGCCAAGCCCTGTGCTCTGAAGACGGCCACAAGAGAAGGATCCTT ACTCTGGGCCTGGGATTTCTCGTTATCCCATTTCTCCCCGCGAGTAACCTGTTCTTCCGA GTGGGCTTCGTGGTCGCAGAGCGTGTCCTCTACCTCCCCAGCGTTGGGTACTGTGTGCTG CTGACTTTTGGATTCGGAGCCCTGAGCAAACATACCAAGAAAAAGAAACTCATTGCCGCT GTCGTGCTGGGAATCTTATTCATCAACACGCTGAGATGTGTGCTGCGCAGCGGCGAGTGG CGGAGTGAGGAACAGCTTTTCAGAAGTGCTCTGTCTGTGTGTCCCCTCAATGCTAAGGTT CACTACAACATTGGCAAAAACCTGGCTGATAAAGGCAACCAGACAGCTGCCATCAGATAC TACCGGGAAGCTGTAAGATTAAATCCCAAGTATGTTCATGCCATGAATAATCTTGGAAAT ATCTTAAAAGAAAGGAATGAGCTACAGGAAGCTGAGGAGCTGCTGTCTTTGGCTGTTCAA ATACAGCCAGACTTTGCCGCTGCGTGGATGAATCTAGGCATAGTGCAGAATAGCCTGAAA CGGTTTGAAGCAGCAGAGCAAAGTTACCGGACAGCAATTAAACACAGAAGGAAATACCCA GACTGTTACTACAACCTCGGGCGTCTGTATGCAGATCTCAATCGCCACGTGGATGCCTTG AATGCGTGGAGAAATGCCACCGTGCTGAAACCAGAGCACAGCCTGGCCTGGAACAACATG ATTATACTCCTCGACAATACAGGTAATTTAGCCCAAGCTGAAGCAGTTGGAAGAGAGGCA CTGGAATTAATACCTAATGATCACTCTCTCATGTTCTCGTTGGCAAACGTGCTGGGGAAA TCCCAGAAATACAAGGAATCTGAAGCTTTATTCCTCAAGGCAATTAAAGCAAATCCAAAT GCTGCAAGTTACCATGGTAATTTGGCTGTGCTTTATCATCGTTGGGGACATCTAGACTTG GCCAAGAAACACTATGAAATCTCCTTGCAGCTTGACCCCACGGCATCAGGAACTAAGGAG AATTACGGTCTGCTGAGAAGAAAGCTAGAACTAATGCAAAAGAAAGCTGTCGTTTAAACG AATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCC GGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACT AGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAAC TATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCC ACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTA GCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTT CCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCA GCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTG CCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCG TTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGG CTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGG CTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAAT GAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCA GCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCG GGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGAT GCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAA CATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTG GACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATG CCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTG GAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTAT CAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGAC CGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGC CTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGC CCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAA CGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGC GTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTC AAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAG CTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCT CCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTA GGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGC CTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGC AGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTT GAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCT GAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGC TGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCA AGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTA AGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGG AAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGC AGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCA TACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTT TACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGAT TATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGG CCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGA ACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACC TGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCC CCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACT GGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGC CGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGC CATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGT TTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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