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SpecieshumanProduct IDFXC10278Cloning SiteSgfI-PmeIGenBank AccessionGeneKIBB3356SymbolLRP12
Alias : MIG13A, ST7Descriptionlow density lipoprotein receptor-related protein 12, transcript variant 1Original Clone IDoc01498
Length: 2577 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 859 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS6303.1 0 100.0 LRP12 CCDS47907.1 0 97.8 LRP12 CCDS12430.1 1.3e-74 44.4 LRP3 CCDS9578.1 4e-37 35.5 LRP10
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan NULL 176 197 PR00261 NULL NULL 230 251 PR00261 NULL NULL 386 407 PR00261 NULL NULL 424 445 PR00261 NULL NULL 461 482 PR00261 NULL HMMPfam IPR000859 47 156 PF00431 CUB IPR002172 164 200 PF00057 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 214 254 PF00057 Low-density lipoprotein (LDL) receptor class A repeat IPR000859 259 369 PF00431 CUB IPR002172 413 448 PF00057 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 451 485 PF00057 Low-density lipoprotein (LDL) receptor class A repeat HMMSmart IPR000859 47 159 SM00042 CUB IPR002172 167 202 SM00192 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 214 256 SM00192 Low-density lipoprotein (LDL) receptor class A repeat IPR000859 259 372 SM00042 CUB IPR002172 374 412 SM00192 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 413 450 SM00192 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 451 487 SM00192 Low-density lipoprotein (LDL) receptor class A repeat ProfileScan IPR000859 47 159 PS01180 CUB IPR002172 165 201 PS50068 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 214 255 PS50068 Low-density lipoprotein (LDL) receptor class A repeat IPR000859 259 372 PS01180 CUB IPR002172 374 411 PS50068 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 412 449 PS50068 Low-density lipoprotein (LDL) receptor class A repeat IPR002172 450 486 PS50068 Low-density lipoprotein (LDL) receptor class A repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 15 SALLLLFLAGVYGNGALAEHSEN 37 SECONDARY 23 2 489 VPTRVITAAVIGSLICGLLLVIA 511 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_002324 770 603159 44.4 83.5 XP_005259002 785 603159 43.6 83.5 NP_054764 713 609921 35.5 89.2 XP_005267567 721 609921 35.5 89.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB3356 Download>KIBB3356 2577 bp ATGGCCTGTCGCTGGAGCACAAAAGAGTCTCCGCGGTGGAGGTCTGCGTTGCTCTTGCTT TTCCTCGCTGGGGTGTACGGAAATGGTGCTCTTGCAGAACATTCTGAAAATGTGCATATT TCAGGAGTGTCAACTGCTTGTGGAGAGACTCCAGAGCAAATACGAGCACCAAGTGGCATA ATCACAAGCCCAGGCTGGCCTTCTGAATATCCTGCAAAAATCAACTGTAGCTGGTTCATA AGGGCAAACCCAGGCGAAATCATTACTATAAGTTTTCAGGATTTTGATATTCAAGGATCC AGAAGGTGCAATTTGGACTGGTTGACAATAGAAACATACAAGAATATTGAAAGTTACAGA GCTTGTGGTTCCACAATTCCACCTCCGTATATCTCTTCACAAGACCACATCTGGATTAGG TTTCATTCGGATGACAACATCTCTAGAAAGGGTTTCAGACTGGCATATTTTTCAGGGAAA TCTGAGGAACCAAATTGTGCTTGTGATCAGTTTCGTTGTGGTAATGGAAAGTGTATACCA GAAGCCTGGAAATGTAATAACATGGATGAATGTGGAGATAGTTCCGATGAAGAGATCTGT GCCAAAGAAGCAAATCCTCCAACTGCTGCTGCTTTTCAACCCTGTGCTTACAACCAGTTC CAGTGTTTATCCCGTTTTACCAAAGTTTACACTTGCCTCCCCGAATCTTTAAAATGTGAT GGGAACATTGACTGCCTTGACCTAGGAGATGAGATAGACTGTGATGTGCCAACATGTGGG CAATGGCTAAAATATTTTTATGGTACTTTTAATTCTCCCAATTATCCAGACTTTTATCCT CCTGGAAGCAATTGCACCTGGTTAATAGACACTGGTGATCACCGTAAAGTCATTTTACGC TTCACTGACTTTAAACTTGATGGTACTGGTTATGGTGATTATGTCAAAATATATGATGGA TTAGAGGAGAATCCACACAAGCTTTTGCGTGTGTTGACAGCTTTTGATTCTCATGCACCT CTTACAGTTGTTTCTTCTTCTGGACAGATAAGGGTACATTTTTGTGCTGATAAAGTGAAT GCTGCAAGGGGATTTAATGCTACTTACCAAGTAGATGGGTTCTGTTTGCCATGGGAAATA CCCTGTGGAGGTAACTGGGGGTGTTATACTGAGCAGCAGCGTTGTGATGGGTATTGGCAT TGCCCAAATGGAAGGGATGAAACCAATTGTACCATGTGCCAGAAGGAAGAATTTCCATGT TCCCGAAATGGTGTCTGTTATCCTCGTTCTGATCGCTGCAACTACCAGAATCATTGCCCA AATGGCTCAGATGAAAAAAACTGCTTTTTTTGCCAACCAGGAAATTTCCATTGTAAAAAC AATCGTTGTGTGTTTGAAAGTTGGGTGTGTGATTCTCAAGATGACTGTGGTGATGGCAGC GATGAAGAAAATTGCCCAGTAATCGTGCCTACAAGAGTCATCACTGCTGCCGTCATAGGG AGCCTCATCTGTGGCCTGTTACTCGTCATAGCATTGGGATGTACTTGTAAGCTTTATTCT CTGAGAATGTTTGAAAGAAGATCATTTGAAACACAGTTGTCAAGAGTGGAAGCAGAATTG TTAAGAAGAGAAGCTCCTCCCTCGTATGGACAATTGATTGCTCAGGGTTTAATTCCACCA GTTGAAGATTTTCCTGTTTGTTCACCTAATCAGGCTTCTGTTTTGGAAAATCTGAGGCTA GCGGTACGATCTCAGCTTGGATTTACTTCAGTCAGGCTTCCTATGGCAGGCAGATCAAGC AACATTTGGAACCGTATTTTTAATTTTGCAAGATCACGTCATTCTGGGTCATTGGCTTTG GTCTCAGCAGATGGAGATGAGGTTGTCCCTAGTCAGAGTACCAGTAGAGAACCTGAGAGA AATCATACTCACAGAAGTTTGTTTTCCGTGGAGTCTGATGATACAGACACAGAAAATGAG AGAAGAGATATGGCAGGAGCATCTGGTGGGGTTGCAGCTCCTTTGCCTCAAAAAGTCCCT CCCACAACGGCAGTAGAAGCGACAGTAGGAGCATGTGCAAGTTCCTCAACTCAGAGTACC CGAGGTGGTCATGCAGATAATGGAAGGGATGTGACAAGTGTGGAACCCCCAAGTGTGAGT CCAGCACGTCACCAGCTTACAAGTGCACTCAGTCGTATGACTCAGGGGCTACGCTGGGTA CGTTTTACATTAGGACGATCAAGTTCCCTAAGTCAGAACCAGAGTCCTTTGAGACAACTT GATAATGGGGTAAGTGGAAGAGAAGATGATGATGATGTTGAAATGCTAATTCCAATTTCT GATGGATCTTCAGACTTTGATGTGAATGACTGCTCCAGACCTCTTCTTGATCTTGCCTCA GATCAAGGACAAGGGCTTAGACAACCATATAATGCAACAAATCCTGGAGTAAGGCCAAGT AATCGAGATGGCCCCTGTGAGCGCTGTGGTATTGTCCACACTGCCCAGATACCAGACACT TGCTTAGAAGTAACACTGAAAAACGAAACGAGTGATGATGAGGCTTTGTTACTTTGT
Cloned ORF protein sequence for pF1KB3356 Download>KIBB3356 859 aa MACRWSTKESPRWRSALLLLFLAGVYGNGALAEHSENVHISGVSTACGETPEQIRAPSGI ITSPGWPSEYPAKINCSWFIRANPGEIITISFQDFDIQGSRRCNLDWLTIETYKNIESYR ACGSTIPPPYISSQDHIWIRFHSDDNISRKGFRLAYFSGKSEEPNCACDQFRCGNGKCIP EAWKCNNMDECGDSSDEEICAKEANPPTAAAFQPCAYNQFQCLSRFTKVYTCLPESLKCD GNIDCLDLGDEIDCDVPTCGQWLKYFYGTFNSPNYPDFYPPGSNCTWLIDTGDHRKVILR FTDFKLDGTGYGDYVKIYDGLEENPHKLLRVLTAFDSHAPLTVVSSSGQIRVHFCADKVN AARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPC SRNGVCYPRSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGS DEENCPVIVPTRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAEL LRREAPPSYGQLIAQGLIPPVEDFPVCSPNQASVLENLRLAVRSQLGFTSVRLPMAGRSS NIWNRIFNFARSRHSGSLALVSADGDEVVPSQSTSREPERNHTHRSLFSVESDDTDTENE RRDMAGASGGVAAPLPQKVPPTTAVEATVGACASSSTQSTRGGHADNGRDVTSVEPPSVS PARHQLTSALSRMTQGLRWVRFTLGRSSSLSQNQSPLRQLDNGVSGREDDDDVEMLIPIS DGSSDFDVNDCSRPLLDLASDQGQGLRQPYNATNPGVRPSNRDGPCERCGIVHTAQIPDT CLEVTLKNETSDDEALLLC
Nucleotide Sequence (with vector) for pF1KB3356 Download>pF1KB3356 5690 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCCTGTCGC TGGAGCACAAAAGAGTCTCCGCGGTGGAGGTCTGCGTTGCTCTTGCTTTTCCTCGCTGGG GTGTACGGAAATGGTGCTCTTGCAGAACATTCTGAAAATGTGCATATTTCAGGAGTGTCA ACTGCTTGTGGAGAGACTCCAGAGCAAATACGAGCACCAAGTGGCATAATCACAAGCCCA GGCTGGCCTTCTGAATATCCTGCAAAAATCAACTGTAGCTGGTTCATAAGGGCAAACCCA GGCGAAATCATTACTATAAGTTTTCAGGATTTTGATATTCAAGGATCCAGAAGGTGCAAT TTGGACTGGTTGACAATAGAAACATACAAGAATATTGAAAGTTACAGAGCTTGTGGTTCC ACAATTCCACCTCCGTATATCTCTTCACAAGACCACATCTGGATTAGGTTTCATTCGGAT GACAACATCTCTAGAAAGGGTTTCAGACTGGCATATTTTTCAGGGAAATCTGAGGAACCA AATTGTGCTTGTGATCAGTTTCGTTGTGGTAATGGAAAGTGTATACCAGAAGCCTGGAAA TGTAATAACATGGATGAATGTGGAGATAGTTCCGATGAAGAGATCTGTGCCAAAGAAGCA AATCCTCCAACTGCTGCTGCTTTTCAACCCTGTGCTTACAACCAGTTCCAGTGTTTATCC CGTTTTACCAAAGTTTACACTTGCCTCCCCGAATCTTTAAAATGTGATGGGAACATTGAC TGCCTTGACCTAGGAGATGAGATAGACTGTGATGTGCCAACATGTGGGCAATGGCTAAAA TATTTTTATGGTACTTTTAATTCTCCCAATTATCCAGACTTTTATCCTCCTGGAAGCAAT TGCACCTGGTTAATAGACACTGGTGATCACCGTAAAGTCATTTTACGCTTCACTGACTTT AAACTTGATGGTACTGGTTATGGTGATTATGTCAAAATATATGATGGATTAGAGGAGAAT CCACACAAGCTTTTGCGTGTGTTGACAGCTTTTGATTCTCATGCACCTCTTACAGTTGTT TCTTCTTCTGGACAGATAAGGGTACATTTTTGTGCTGATAAAGTGAATGCTGCAAGGGGA TTTAATGCTACTTACCAAGTAGATGGGTTCTGTTTGCCATGGGAAATACCCTGTGGAGGT AACTGGGGGTGTTATACTGAGCAGCAGCGTTGTGATGGGTATTGGCATTGCCCAAATGGA AGGGATGAAACCAATTGTACCATGTGCCAGAAGGAAGAATTTCCATGTTCCCGAAATGGT GTCTGTTATCCTCGTTCTGATCGCTGCAACTACCAGAATCATTGCCCAAATGGCTCAGAT GAAAAAAACTGCTTTTTTTGCCAACCAGGAAATTTCCATTGTAAAAACAATCGTTGTGTG TTTGAAAGTTGGGTGTGTGATTCTCAAGATGACTGTGGTGATGGCAGCGATGAAGAAAAT TGCCCAGTAATCGTGCCTACAAGAGTCATCACTGCTGCCGTCATAGGGAGCCTCATCTGT GGCCTGTTACTCGTCATAGCATTGGGATGTACTTGTAAGCTTTATTCTCTGAGAATGTTT GAAAGAAGATCATTTGAAACACAGTTGTCAAGAGTGGAAGCAGAATTGTTAAGAAGAGAA GCTCCTCCCTCGTATGGACAATTGATTGCTCAGGGTTTAATTCCACCAGTTGAAGATTTT CCTGTTTGTTCACCTAATCAGGCTTCTGTTTTGGAAAATCTGAGGCTAGCGGTACGATCT CAGCTTGGATTTACTTCAGTCAGGCTTCCTATGGCAGGCAGATCAAGCAACATTTGGAAC CGTATTTTTAATTTTGCAAGATCACGTCATTCTGGGTCATTGGCTTTGGTCTCAGCAGAT GGAGATGAGGTTGTCCCTAGTCAGAGTACCAGTAGAGAACCTGAGAGAAATCATACTCAC AGAAGTTTGTTTTCCGTGGAGTCTGATGATACAGACACAGAAAATGAGAGAAGAGATATG GCAGGAGCATCTGGTGGGGTTGCAGCTCCTTTGCCTCAAAAAGTCCCTCCCACAACGGCA GTAGAAGCGACAGTAGGAGCATGTGCAAGTTCCTCAACTCAGAGTACCCGAGGTGGTCAT GCAGATAATGGAAGGGATGTGACAAGTGTGGAACCCCCAAGTGTGAGTCCAGCACGTCAC CAGCTTACAAGTGCACTCAGTCGTATGACTCAGGGGCTACGCTGGGTACGTTTTACATTA GGACGATCAAGTTCCCTAAGTCAGAACCAGAGTCCTTTGAGACAACTTGATAATGGGGTA AGTGGAAGAGAAGATGATGATGATGTTGAAATGCTAATTCCAATTTCTGATGGATCTTCA GACTTTGATGTGAATGACTGCTCCAGACCTCTTCTTGATCTTGCCTCAGATCAAGGACAA GGGCTTAGACAACCATATAATGCAACAAATCCTGGAGTAAGGCCAAGTAATCGAGATGGC CCCTGTGAGCGCTGTGGTATTGTCCACACTGCCCAGATACCAGACACTTGCTTAGAAGTA ACACTGAAAAACGAAACGAGTGATGATGAGGCTTTGTTACTTTGTGTTTAAACGAATTCG AGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGC TAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATA ACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATC CGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCA AGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGAC ATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTA GCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGG GCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCA AGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGC ATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTC GGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCA GCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTG CAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTG CTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAG GATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATG CGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGC ATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAA GAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGAT GGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAAT GGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGAC ATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTC CTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTT GACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACC GGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGG AAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCT GGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCA GAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCT CGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTC GGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGT TCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATC CGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGC CACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTG GTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCC AGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAG CGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGA TCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGAT TTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATAC AGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTC AGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGT TAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTG TCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGT AAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGA TGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAG AAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCC CATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGC GAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAG CGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAA CTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTAC AAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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