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SpecieshumanProduct IDFXC04499Cloning SiteSgfI-PmeIGeneKIEE0305SymbolCD93
Alias : C1QR1, C1qR(P), C1qRP, CDw93, ECSM3, MXRA4, dJ737E23.1DescriptionCD93 moleculeOriginal Clone IDoc01005
Length: 1956 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 652 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS13149.1 9.8e-161 99.8 CD93 CCDS74370.1 5.4e-14 33.2 LTBP4 CCDS74368.1 5.5e-14 33.2 LTBP4 CCDS74369.1 5.6e-14 33.2 LTBP4 CCDS54345.1 1e-13 37.6 LTBP1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001304 47 145 PF00059 C-type lectin IPR006209 306 335 PF00008 EGF IPR013091 345 383 PF07645 EGF calcium-binding IPR013091 385 425 PF07645 EGF calcium-binding IPR013091 427 467 PF07645 EGF calcium-binding HMMSmart IPR001304 25 181 SM00034 C-type lectin IPR006210 263 301 SM00181 Epidermal growth factor-like IPR001881 264 301 SM00179 EGF-like calcium-binding IPR001881 302 344 SM00179 EGF-like calcium-binding IPR006210 305 344 SM00181 Epidermal growth factor-like IPR001881 345 384 SM00179 EGF-like calcium-binding IPR006210 348 384 SM00181 Epidermal growth factor-like IPR001881 385 426 SM00179 EGF-like calcium-binding IPR006210 388 426 SM00181 Epidermal growth factor-like IPR001881 427 468 SM00179 EGF-like calcium-binding IPR006210 430 468 SM00181 Epidermal growth factor-like ProfileScan IPR001304 32 165 PS50041 C-type lectin IPR000742 302 340 PS50026 Epidermal growth factor-like IPR000742 345 379 PS50026 Epidermal growth factor-like IPR000742 385 426 PS50026 Epidermal growth factor-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MATSMGLLLLLLLLLT 16 PRIMARY 16 2 22 TGADTEAVVCVGTACYTAHSG 42 SECONDARY 21 3 582 LLFYILGTVVAILLLLALALGLL 604 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0305 Download>KIEE0305 1956 bp ATGGCCACCTCCATGGGCCTGCTGCTGCTGCTGCTGCTGCTCCTGACCCAGCCCGGGGCG GGGACGGGAGCTGACACGGAGGCGGTGGTCTGCGTGGGGACCGCCTGCTACACGGCCCAC TCGGGCAAGCTGAGCGCTGCCGAGGCCCAGAACCACTGCAACCAGAACGGGGGCAACCTG GCCACTGTGAAGAGCAAGGAGGAGGCCCAGCACGTCCAGCGAGTACTGGCCCAGCTCCTG AGGCGGGAGGCAGCCCTGACGGCGAGGATGAGCAAGTTCTGGATTGGGCTCCAGCGAGAG AAGGGCAAGTGCCTGGACCCTAGTCTGCCGCTGAAGGGCTTCAGCTGGGTGGGCGGGGGG GAGGACACGCCTTACTCTAACTGGCACAAGGAGCTCCGGAACTCGTGCATCTCCAAGCGC TGTGTGTCTCTGCTGCTGGACCTGTCCCAGCCGCTCCTTCCCAGCCGCCTCCCCAAGTGG TCTGAGGGCCCCTGTGGGAGCCCAGGCTCCCCCGGAAGTAACATTGAGGGCTTCGTGTGC AAGTTCAGCTTCAAAGGCATGTGCCGGCCTCTGGCCCTGGGGGGCCCAGGTCAGGTGACC TACACCACCCCCTTCCAGACCACCAGTTCCTCCTTGGAGGCTGTGCCCTTTGCCTCTGCG GCCAATGTAGCCTGTGGGGAAGGTGACAAGGACGAGACTCAGAGTCATTATTTCCTGTGC AAGGAGAAGGCCCCCGATGTGTTCGACTGGGGCAGCTCGGGCCCCCTCTGTGTCAGCCCC AAGTATGGCTGCAACTTCAACAATGGGGGCTGCCACCAGGACTGCTTTGAAGGGGGGGAT GGCTCCTTCCTCTGCGGCTGCCGACCAGGATTCCGGCTGCTGGATGACCTGGTGACCTGT GCCTCTCGAAACCCTTGCAGCTCCAGCCCATGTCGTGGGGGGGCCACGTGCGTCCTGGGA CCCCATGGGAAAAACTACACGTGCCGCTGCCCCCAAGGGTACCAGCTGGACTCGAGTCAG CTGGACTGTGTGGACGTGGATGAATGCCAGGACTCCCCCTGTGCCCAGGAGTGTGTCAAC ACCCCTGGGGGCTTCCGCTGCGAATGCTGGGTTGGCTATGAGCCGGGCGGTCCTGGAGAG GGGGCCTGTCAGGATGTGGATGAGTGTGCTCTGGGTCGCTCGCCTTGCGCCCAGGGCTGC ACCAACACAGATGGCTCATTTCACTGCTCCTGTGAGGAGGGCTACGTCCTGGCCGGGGAG GACGGGACTCAGTGCCAGGACGTGGATGAGTGTGTGGGCCCGGGGGGCCCCCTCTGCGAC AGCTTGTGCTTCAACACACAAGGGTCCTTCCACTGTGGCTGCCTGCCAGGCTGGGTGCTG GCCCCAAATGGGGTCTCTTGCACCATGGGGCCTGTGTCTCTGGGACCACCATCTGGGCCC CCCGATGAGGAGGACAAAGGAGAGAAAGAAGGGAGCACCGTGCCCCGTGCTGCAACAGCC AGTCCCACAAGGGGCCCCGAGGGCACCCTCAAGGCTACACCCACCACAAGTAGACCTTCG CTGTCATCTGACGCCCCCATCACATCTGCCCCACTCAAGATGCTGGCCCCCAGTGGGTCC CCAGGCGTCTGGAGGGAGCCCAGCATCCATCACGCCACAGCTGCCTCTGGCCCCCAGGAG CCTGCAGGTGGGGACTCCTCCGTGGCCACACAAAACAACGATGGCACTGACGGGCAAAAG CTGCTTTTATTCTACATCCTAGGCACCGTGGTGGCCATCCTACTCCTGCTGGCCCTGGCT CTGGGGCTACTGGTCTATCGCAAGCGGAGAGCGAAGAGGGAGGAGAAGAAGGAGAAGAAG CCCCAGAATGCGGCAGACAGTTACTCCTGGGTTCCAGAGCGAGCTGAGAGCAGGGCCATG GAGAACCAGTACAGTCCGACACCTGGGACAGACTGC
Cloned ORF protein sequence for pF1KE0305 Download>KIEE0305 652 aa MATSMGLLLLLLLLLTQPGAGTGADTEAVVCVGTACYTAHSGKLSAAEAQNHCNQNGGNL ATVKSKEEAQHVQRVLAQLLRREAALTARMSKFWIGLQREKGKCLDPSLPLKGFSWVGGG EDTPYSNWHKELRNSCISKRCVSLLLDLSQPLLPSRLPKWSEGPCGSPGSPGSNIEGFVC KFSFKGMCRPLALGGPGQVTYTTPFQTTSSSLEAVPFASAANVACGEGDKDETQSHYFLC KEKAPDVFDWGSSGPLCVSPKYGCNFNNGGCHQDCFEGGDGSFLCGCRPGFRLLDDLVTC ASRNPCSSSPCRGGATCVLGPHGKNYTCRCPQGYQLDSSQLDCVDVDECQDSPCAQECVN TPGGFRCECWVGYEPGGPGEGACQDVDECALGRSPCAQGCTNTDGSFHCSCEEGYVLAGE DGTQCQDVDECVGPGGPLCDSLCFNTQGSFHCGCLPGWVLAPNGVSCTMGPVSLGPPSGP PDEEDKGEKEGSTVPRAATASPTRGPEGTLKATPTTSRPSLSSDAPITSAPLKMLAPSGS PGVWREPSIHHATAASGPQEPAGGDSSVATQNNDGTDGQKLLLFYILGTVVAILLLLALA LGLLVYRKRRAKREEKKEKKPQNAADSYSWVPERAESRAMENQYSPTPGTDC
Nucleotide Sequence (with vector) for pF1KE0305 Download>pF1KE0305 5069 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCCACCTCC ATGGGCCTGCTGCTGCTGCTGCTGCTGCTCCTGACCCAGCCCGGGGCGGGGACGGGAGCT GACACGGAGGCGGTGGTCTGCGTGGGGACCGCCTGCTACACGGCCCACTCGGGCAAGCTG AGCGCTGCCGAGGCCCAGAACCACTGCAACCAGAACGGGGGCAACCTGGCCACTGTGAAG AGCAAGGAGGAGGCCCAGCACGTCCAGCGAGTACTGGCCCAGCTCCTGAGGCGGGAGGCA GCCCTGACGGCGAGGATGAGCAAGTTCTGGATTGGGCTCCAGCGAGAGAAGGGCAAGTGC CTGGACCCTAGTCTGCCGCTGAAGGGCTTCAGCTGGGTGGGCGGGGGGGAGGACACGCCT TACTCTAACTGGCACAAGGAGCTCCGGAACTCGTGCATCTCCAAGCGCTGTGTGTCTCTG CTGCTGGACCTGTCCCAGCCGCTCCTTCCCAGCCGCCTCCCCAAGTGGTCTGAGGGCCCC TGTGGGAGCCCAGGCTCCCCCGGAAGTAACATTGAGGGCTTCGTGTGCAAGTTCAGCTTC AAAGGCATGTGCCGGCCTCTGGCCCTGGGGGGCCCAGGTCAGGTGACCTACACCACCCCC TTCCAGACCACCAGTTCCTCCTTGGAGGCTGTGCCCTTTGCCTCTGCGGCCAATGTAGCC TGTGGGGAAGGTGACAAGGACGAGACTCAGAGTCATTATTTCCTGTGCAAGGAGAAGGCC CCCGATGTGTTCGACTGGGGCAGCTCGGGCCCCCTCTGTGTCAGCCCCAAGTATGGCTGC AACTTCAACAATGGGGGCTGCCACCAGGACTGCTTTGAAGGGGGGGATGGCTCCTTCCTC TGCGGCTGCCGACCAGGATTCCGGCTGCTGGATGACCTGGTGACCTGTGCCTCTCGAAAC CCTTGCAGCTCCAGCCCATGTCGTGGGGGGGCCACGTGCGTCCTGGGACCCCATGGGAAA AACTACACGTGCCGCTGCCCCCAAGGGTACCAGCTGGACTCGAGTCAGCTGGACTGTGTG GACGTGGATGAATGCCAGGACTCCCCCTGTGCCCAGGAGTGTGTCAACACCCCTGGGGGC TTCCGCTGCGAATGCTGGGTTGGCTATGAGCCGGGCGGTCCTGGAGAGGGGGCCTGTCAG GATGTGGATGAGTGTGCTCTGGGTCGCTCGCCTTGCGCCCAGGGCTGCACCAACACAGAT GGCTCATTTCACTGCTCCTGTGAGGAGGGCTACGTCCTGGCCGGGGAGGACGGGACTCAG TGCCAGGACGTGGATGAGTGTGTGGGCCCGGGGGGCCCCCTCTGCGACAGCTTGTGCTTC AACACACAAGGGTCCTTCCACTGTGGCTGCCTGCCAGGCTGGGTGCTGGCCCCAAATGGG GTCTCTTGCACCATGGGGCCTGTGTCTCTGGGACCACCATCTGGGCCCCCCGATGAGGAG GACAAAGGAGAGAAAGAAGGGAGCACCGTGCCCCGTGCTGCAACAGCCAGTCCCACAAGG GGCCCCGAGGGCACCCTCAAGGCTACACCCACCACAAGTAGACCTTCGCTGTCATCTGAC GCCCCCATCACATCTGCCCCACTCAAGATGCTGGCCCCCAGTGGGTCCCCAGGCGTCTGG AGGGAGCCCAGCATCCATCACGCCACAGCTGCCTCTGGCCCCCAGGAGCCTGCAGGTGGG GACTCCTCCGTGGCCACACAAAACAACGATGGCACTGACGGGCAAAAGCTGCTTTTATTC TACATCCTAGGCACCGTGGTGGCCATCCTACTCCTGCTGGCCCTGGCTCTGGGGCTACTG GTCTATCGCAAGCGGAGAGCGAAGAGGGAGGAGAAGAAGGAGAAGAAGCCCCAGAATGCG GCAGACAGTTACTCCTGGGTTCCAGAGCGAGCTGAGAGCAGGGCCATGGAGAACCAGTAC AGTCCGACACCTGGGACAGACTGCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCT CTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGC TGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACG GGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAA AACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGC GCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCG TTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTG CTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGG AAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGA TCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTG CACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAG ACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTT TTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTA TCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCG GGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTT GCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGAT CCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGG ATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCA GCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACT CATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATC GACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGAT ATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCC GCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGA CTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGC GGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG CCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCG CCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGG ACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGAC CCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCA TAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGT GCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTC CAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAG AGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACAC TAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGT TGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAA GCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGG GTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAA AAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCC CTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAAT GTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATT GCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTG AACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCC TCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCG AGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAA TTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAA ACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGC ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGT CGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGC AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGC AGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTC TAAATACATTCAAATATGTATCCGCTCAT
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