CDX1 ORF clone FXC03255

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Flexi ORF Clone FXC03255

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Clone info.

Species

human

Clone Name

pF1KB9696 Sequence (with vector) Restriction Map

Product ID

FXC03255

HaloTag Clone PID

FHC03255

ORF Sequence

DNA sequence (795 bp)
Protein sequence (265 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463469]

Gene

KIBB9696

Symbol

CDX1

Description

caudal type homeobox 1

Original Clone ID

cp00279

Features of the cloned ORF sequence

Description

Length: 795 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 265 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4304.1 1.7e-40 99.6 CDX1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR020479 176 187 PR00024 Homeobox IPR000047 183 192 PR00031 Helix-turn-helix motif IPR020479 191 201 PR00024 Homeobox IPR000047 192 208 PR00031 Helix-turn-helix motif IPR020479 201 210 PR00024 Homeobox HMMPfam IPR006820 13 146 PF04731 Caudal-like activation domain IPR001356 156 211 PF00046 Homeobox HMMSmart IPR001356 154 216 SM00389 Homeobox ProfileScan IPR001356 152 212 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001795 265 600746 99.6 100.0 XP_011533177 321 600297 46.2 94.7 NP_001256 313 600297 49.6 89.8 NP_005184 284 300025 45.1 82.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB9696 Download

>KIBB9696  795 bp
ATGTATGTGGGCTATGTGCTGGACAAGGATTCGCCCGTGTACCCCGGCCCAGCCAGGCCA
GCCAGCCTCGGCCTGGGCCCGCAAGCCTACGGCCCCCCGGCCCCGCCCCCGGCGCCCCCG
CAGTACCCCGACTTCTCCAGCTACTCTCACGTGGAGCCGGCCCCCGCGCCCCCGACGGCC
TGGGGGGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCCGCCGCCTACGGCCCGGGCCCC
GCGGCCCCTGCCGCCAGCCCAGCTTCGCTGGCATTCGGGCCCCCTCCAGACTTTAGCCCG
GTGCCGGCGCCCCCTGGGCCCGGCCCGGGCCTCCTGGCGCAGCCCCTCGGGGGCCCGGGC
ACACCGTCCTCGCCCGGAGCGCAGAGGCGGACGCCCTACGAGTGGATGCGGCGCAGCGTG
GCGGCCGGAGGCGGCGGTGGCAGCGGTAAGACTCGGACCAAGGACAAGTACCGCGTGGTC
TACACCGACCACCAACGCCTGGAGCTGGAGAAGGAGTTTCATTACAGCCGTTACATCACA
ATCCGGCGGAAATCAGAGCTGGCTGCCAATCTGGGGCTCACTGAACGGCAGGTGAAGATC
TGGTTCCAAAACCGGCGGGCAAAGGAGCGCAAAGTGAACAAGAAGAAACAGCAGCAGCAA
CAGCCCCCACAGCCGCCGATGGCCCACGACATCACGGCCACCCCAGCCGGGCCATCCCTG
GGGGGCCTGTGTCCCAGCAACACCAGCCTCCTGGCCACCTCCTCTCCAATGCCTGTGAAA
GAGGAGTTTCTGCCA

ORF Protein

Cloned ORF protein sequence for pF1KB9696 Download

>KIBB9696  265 aa
MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA
WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG
TPSSPGAQRRTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT
IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL
GGLCPSNTSLLATSSPMPVKEEFLP

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB9696 Download

>pF1KB9696  3908 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTATGTGGGC
TATGTGCTGGACAAGGATTCGCCCGTGTACCCCGGCCCAGCCAGGCCAGCCAGCCTCGGC
CTGGGCCCGCAAGCCTACGGCCCCCCGGCCCCGCCCCCGGCGCCCCCGCAGTACCCCGAC
TTCTCCAGCTACTCTCACGTGGAGCCGGCCCCCGCGCCCCCGACGGCCTGGGGGGCGCCC
TTCCCTGCGCCCAAGGACGACTGGGCCGCCGCCTACGGCCCGGGCCCCGCGGCCCCTGCC
GCCAGCCCAGCTTCGCTGGCATTCGGGCCCCCTCCAGACTTTAGCCCGGTGCCGGCGCCC
CCTGGGCCCGGCCCGGGCCTCCTGGCGCAGCCCCTCGGGGGCCCGGGCACACCGTCCTCG
CCCGGAGCGCAGAGGCGGACGCCCTACGAGTGGATGCGGCGCAGCGTGGCGGCCGGAGGC
GGCGGTGGCAGCGGTAAGACTCGGACCAAGGACAAGTACCGCGTGGTCTACACCGACCAC
CAACGCCTGGAGCTGGAGAAGGAGTTTCATTACAGCCGTTACATCACAATCCGGCGGAAA
TCAGAGCTGGCTGCCAATCTGGGGCTCACTGAACGGCAGGTGAAGATCTGGTTCCAAAAC
CGGCGGGCAAAGGAGCGCAAAGTGAACAAGAAGAAACAGCAGCAGCAACAGCCCCCACAG
CCGCCGATGGCCCACGACATCACGGCCACCCCAGCCGGGCCATCCCTGGGGGGCCTGTGT
CCCAGCAACACCAGCCTCCTGGCCACCTCCTCTCCAATGCCTGTGAAAGAGGAGTTTCTG
CCAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT
GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC
TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT
GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG
CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA
GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA
CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA
AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG
ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA
GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT
TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC
GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC
GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC
GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG
GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC
ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC
CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT
CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC
AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG
AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG
GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC
GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC
GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCG
ACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGA
ATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCG
TAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAA
AAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTT
TCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCT
GTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCT
CAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCC
CGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT
ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGC
TACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTAT
CTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAA
ACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAA
AAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGA
AAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCT
TTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACC
ATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTG
CATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTT
TGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTA
CAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACC
GCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACA
GATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC
GGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG
TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTC
AGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTA
GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGG
CAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG
GCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTAT
CCGCTCAT