SMARCD3 ORF clone FXC02659

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KOP Flexi HaloTag ORF List search

Flexi ORF Clone FXC02659

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Clone info.

Species

human

Clone Name

pF1KB8204 Sequence (with vector) Restriction Map

Product ID

FXC02659

HaloTag Clone PID

FHC02659

ORF Sequence

DNA sequence (1410 bp)
Protein sequence (470 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464257]

Gene

KIBB8204

Symbol

SMARCD3

Alias : BAF60C, CRACD3, Rsc6p

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, transcript variant 2

Original Clone ID

cp00564

Features of the cloned ORF sequence

Description

Length: 1410 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 470 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS5924.1 9.2e-101 100.0 SMARCD3 CCDS34780.1 1.3e-97 100.0 SMARCD3 CCDS8797.2 1.3e-73 74.1 SMARCD1 CCDS8798.2 4.7e-57 67.8 SMARCD1 CCDS45756.1 1.2e-56 70.4 SMARCD2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR003121 247 320 PF02201 SWIB/MDM2 domain HMMSmart IPR019835 246 325 SM00151 SWIB domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_003069 470 601737 100.0 100.0 NP_001003802 470 601737 100.0 100.0 NP_001003801 483 601737 100.0 97.2 XP_011514823 381 601737 100.0 81.1 NP_003067 515 601735 74.1 99.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8204 Download

>KIBB8204  1410 bp
ATGACTCCAGGTCTTCAGCACCCACCCACCGTGGTACAGCGCCCCGGGATGCCGTCTGGA
GCCCGGATGCCCCACCAGGGGGCGCCCATGGGCCCCCCGGGCTCCCCGTACATGGGCAGC
CCCGCCGTGCGACCCGGCCTGGCCCCCGCGGGCATGGAGCCCGCCCGCAAGCGAGCAGCG
CCCCCGCCCGGGCAGAGCCAGGCACAGAGCCAGGGCCAGCCGGTGCCCACCGCCCCCGCG
CGGAGCCGCAGTGCCAAGAGGAGGAAGATGGCTGACAAAATCCTCCCTCAAAGGATTCGG
GAGCTGGTCCCCGAGTCCCAGGCTTACATGGACCTCTTGGCATTTGAGAGGAAACTGGAT
CAAACCATCATGCGGAAGCGGGTGGACATCCAGGAGGCTCTGAAGAGGCCCATGAAGCAA
AAGCGGAAGCTGCGACTCTATATCTCCAACACTTTTAACCCTGCGAAGCCTGATGCTGAG
GATTCCGACGGCAGCATTGCCTCCTGGGAGCTACGGGTGGAGGGGAAGCTCCTGGATGAT
CCCAGCAAACAGAAGCGGAAGTTCTCTTCTTTCTTCAAGAGTTTGGTCATCGAGCTGGAC
AAAGATCTTTATGGCCCTGACAACCACCTCGTTGAGTGGCATCGGACACCCACGACCCAG
GAGACGGACGGCTTCCAGGTGAAACGGCCTGGGGACCTGAGTGTGCGCTGCACGCTGCTC
CTCATGCTGGACTACCAGCCTCCCCAGTTCAAACTGGATCCCCGCCTAGCCCGGCTGCTG
GGGCTGCACACACAGAGCCGCTCAGCCATTGTCCAGGCCCTGTGGCAGTATGTGAAGACC
AACAGGCTGCAGGACTCCCATGACAAGGAATACATCAATGGGGACAAGTATTTCCAGCAG
ATTTTTGATTGTCCCCGGCTGAAGTTTTCTGAGATTCCCCAGCGCCTCACAGCCCTGCTA
TTGCCCCCTGACCCAATTGTCATCAACCATGTCATCAGCGTGGACCCTTCAGACCAGAAG
AAGACGGCGTGCTATGACATTGACGTGGAGGTGGAGGAGCCATTAAAGGGGCAGATGAGC
AGCTTCCTCCTATCCACGGCCAACCAGCAGGAGATCAGTGCTCTGGACAGTAAGATCCAT
GAGACGATTGAGTCCATAAACCAGCTCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCC
AGAGACCCCAAAGGCTATGTCCAAGACCTGCTCCGCTCCCAGAGCCGGGACCTCAAGGTG
ATGACAGATGTAGCCGGCAACCCTGAAGAGGAGCGCCGGGCTGAGTTCTACCACCAGCCC
TGGTCCCAGGAGGCCGTCAGTCGCTACTTCTACTGCAAGATCCAGCAGCGCAGGCAGGAG
CTGGAGCAGTCGCTGGTTGTGCGCAACACC

ORF Protein

Cloned ORF protein sequence for pF1KB8204 Download

>KIBB8204  470 aa
MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8204 Download

>pF1KB8204  4523 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGACTCCAGGT
CTTCAGCACCCACCCACCGTGGTACAGCGCCCCGGGATGCCGTCTGGAGCCCGGATGCCC
CACCAGGGGGCGCCCATGGGCCCCCCGGGCTCCCCGTACATGGGCAGCCCCGCCGTGCGA
CCCGGCCTGGCCCCCGCGGGCATGGAGCCCGCCCGCAAGCGAGCAGCGCCCCCGCCCGGG
CAGAGCCAGGCACAGAGCCAGGGCCAGCCGGTGCCCACCGCCCCCGCGCGGAGCCGCAGT
GCCAAGAGGAGGAAGATGGCTGACAAAATCCTCCCTCAAAGGATTCGGGAGCTGGTCCCC
GAGTCCCAGGCTTACATGGACCTCTTGGCATTTGAGAGGAAACTGGATCAAACCATCATG
CGGAAGCGGGTGGACATCCAGGAGGCTCTGAAGAGGCCCATGAAGCAAAAGCGGAAGCTG
CGACTCTATATCTCCAACACTTTTAACCCTGCGAAGCCTGATGCTGAGGATTCCGACGGC
AGCATTGCCTCCTGGGAGCTACGGGTGGAGGGGAAGCTCCTGGATGATCCCAGCAAACAG
AAGCGGAAGTTCTCTTCTTTCTTCAAGAGTTTGGTCATCGAGCTGGACAAAGATCTTTAT
GGCCCTGACAACCACCTCGTTGAGTGGCATCGGACACCCACGACCCAGGAGACGGACGGC
TTCCAGGTGAAACGGCCTGGGGACCTGAGTGTGCGCTGCACGCTGCTCCTCATGCTGGAC
TACCAGCCTCCCCAGTTCAAACTGGATCCCCGCCTAGCCCGGCTGCTGGGGCTGCACACA
CAGAGCCGCTCAGCCATTGTCCAGGCCCTGTGGCAGTATGTGAAGACCAACAGGCTGCAG
GACTCCCATGACAAGGAATACATCAATGGGGACAAGTATTTCCAGCAGATTTTTGATTGT
CCCCGGCTGAAGTTTTCTGAGATTCCCCAGCGCCTCACAGCCCTGCTATTGCCCCCTGAC
CCAATTGTCATCAACCATGTCATCAGCGTGGACCCTTCAGACCAGAAGAAGACGGCGTGC
TATGACATTGACGTGGAGGTGGAGGAGCCATTAAAGGGGCAGATGAGCAGCTTCCTCCTA
TCCACGGCCAACCAGCAGGAGATCAGTGCTCTGGACAGTAAGATCCATGAGACGATTGAG
TCCATAAACCAGCTCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCCAGAGACCCCAAA
GGCTATGTCCAAGACCTGCTCCGCTCCCAGAGCCGGGACCTCAAGGTGATGACAGATGTA
GCCGGCAACCCTGAAGAGGAGCGCCGGGCTGAGTTCTACCACCAGCCCTGGTCCCAGGAG
GCCGTCAGTCGCTACTTCTACTGCAAGATCCAGCAGCGCAGGCAGGAGCTGGAGCAGTCG
CTGGTTGTGCGCAACACCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAG
TCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTT
GGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTT
GAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGC
CCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGC
GTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTG
CGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCG
GCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCC
TGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGA
TCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCA
GGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATC
GGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTC
AAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGG
CTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGG
GACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCT
GCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCT
ACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAA
GCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAA
CTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGC
GATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGT
GGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCT
GAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCC
GATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGG
GGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAAT
ACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCA
AAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCC
TGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATA
AAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCC
GCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTC
ACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGA
ACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCC
GGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAG
GTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAG
GACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAG
CTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCA
GATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGA
CGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGAT
CTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGC
TGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCC
TGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCA
GTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCG
TTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAG
CCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT
TTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCC
TGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG
TAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAA
TAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGA
ACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGC
CCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGG
CCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATA
CATTCAAATATGTATCCGCTCAT