HTR3B ORF clone FXC02359

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Flexi ORF Clone FXC02359

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Clone info.

Species

human

Clone Name

pF1KB7256 Sequence (with vector) Restriction Map

Product ID

FXC02359

HaloTag Clone PID

FHC02359

ORF Sequence

DNA sequence (1323 bp)
Protein sequence (441 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463385]

Gene

KIBB7256

Symbol

HTR3B

Alias : 5-HT3B

Description

5-hydroxytryptamine (serotonin) receptor 3B, ionotropic

Original Clone ID

oc00472

Features of the cloned ORF sequence

Description

Length: 1323 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 441 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS8364.1 3.2e-196 100.0 HTR3B CCDS8365.2 5.3e-72 42.2 HTR3A CCDS53710.1 8.2e-72 43.0 HTR3A CCDS8366.2 2.4e-65 42.7 HTR3A CCDS58868.1 1.3e-42 33.3 HTR3E The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR008134 17 32 PR01710 5-hydroxytryptamine 3 receptor IPR006201 79 95 PR00252 Neurotransmitter-gated ion-channel IPR006201 112 123 PR00252 Neurotransmitter-gated ion-channel IPR008132 121 137 PR01708 5-hydroxytryptamine 3 receptor IPR006201 155 169 PR00252 Neurotransmitter-gated ion-channel IPR008134 213 226 PR01710 5-hydroxytryptamine 3 receptor IPR006201 233 245 PR00252 Neurotransmitter-gated ion-channel IPR008132 306 317 PR01708 5-hydroxytryptamine 3 receptor IPR008132 339 348 PR01708 5-hydroxytryptamine 3 receptor IPR008134 367 386 PR01710 5-hydroxytryptamine 3 receptor HMMPfam IPR006202 34 239 PF02931 Neurotransmitter-gated ion-channel ligand-binding IPR006029 246 331 PF02932 Neurotransmitter-gated ion-channel transmembrane domain HMMTigr IPR006201 11 435 TIGR00860 Neurotransmitter-gated ion-channel
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MLSSVMAPLWACILVAAGILAT 22 PRIMARY 22 2 240 LVYVVSLLIPSIFLMLVDLGSFY 262 PRIMARY 23 3 304 HFFTICMAFLVLSLAKSIVLVKF 326 PRIMARY 23 4 417 FQSYLFMLGIYTITLCSLWALWG 439 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006019 441 604654 100.0 100.0 XP_011541365 430 604654 99.1 97.3 XP_016874041 372 604654 99.7 84.1 NP_000860 484 182139 42.2 96.4 NP_001155244 463 182139 43.0 92.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB7256 Download

>KIBB7256  1323 bp
ATGTTGTCAAGTGTAATGGCTCCCCTGTGGGCCTGCATCCTGGTGGCTGCAGGAATTCTA
GCCACAGATACACATCATCCCCAGGATTCTGCTCTGTATCATCTCAGCAAGCAGCTATTA
CAGAAATATCATAAAGAAGTGAGACCTGTTTACAACTGGACCAAGGCCACCACAGTCTAC
CTGGACCTGTTCGTCCATGCTATATTGGATGTGGATGCAGAGAATCAAATATTAAAGACA
AGTGTATGGTACCAAGAGGTCTGGAATGATGAATTTTTATCCTGGAACTCCAGCATGTTT
GATGAGATTAGAGAGATCTCCCTACCTCTAAGTGCCATCTGGGCCCCCGATATCATCATC
AATGAGTTTGTGGACATTGAAAGATACCCTGACCTTCCCTATGTTTATGTGAACTCATCT
GGGACCATTGAGAACTATAAGCCCATCCAGGTGGTCTCTGCGTGCAGTTTAGAGACATAT
GCTTTTCCATTTGATGTCCAGAATTGCAGCCTGACCTTCAAGAGCATTCTGCATACAGTG
GAAGACGTAGACCTGGCCTTTCTGAGGAGCCCAGAAGACATTCAGCATGACAAAAAGGCG
TTTTTGAATGACAGTGAGTGGGAACTTCTATCTGTGTCCTCCACATACAGCATCCTGCAG
AGCAGCGCTGGAGGATTTGCACAGATTCAGTTTAATGTGGTGATGCGCAGGCACCCCCTG
GTCTATGTCGTGAGTCTGCTGATTCCTAGCATCTTTCTCATGCTGGTGGACCTGGGGAGC
TTCTACCTGCCACCCAACTGCCGAGCCAGGATTGTGTTCAAGACCAGTGTGCTGGTGGGC
TACACCGTCTTCAGGGTCAACATGTCCAACCAGGTGCCACGGAGTGTAGGGAGCACCCCT
CTGATTGGGCACTTCTTCACCATCTGCATGGCCTTCTTGGTTCTCAGCTTAGCTAAGTCC
ATCGTGTTGGTCAAATTCCTCCATGATGAGCAGCGTGGTGGACAGGAGCAGCCCTTCTTG
TGCCTTCGAGGGGACACCGATGCTGACAGGCCTAGAGTGGAACCCAGGGCCCAACGTGCT
GTGGTAACAGAGTCCTCGCTGTATGGAGAGCACCTGGCCCAGCCAGGAACCCTGAAGGAA
GTCTGGTCGCAGCTTCAATCTATCAGCAACTACCTCCAAACTCAGGACCAGACAGACCAA
CAGGAGGCAGAGTGGCTGGTCCTCCTGTCCCGCTTTGACCGACTGCTCTTCCAAAGCTAC
CTTTTCATGCTGGGGATCTACACCATCACTCTGTGCTCCCTCTGGGCACTGTGGGGCGGC
GTG

ORF Protein

Cloned ORF protein sequence for pF1KB7256 Download

>KIBB7256  441 aa
MLSSVMAPLWACILVAAGILATDTHHPQDSALYHLSKQLLQKYHKEVRPVYNWTKATTVY
LDLFVHAILDVDAENQILKTSVWYQEVWNDEFLSWNSSMFDEIREISLPLSAIWAPDIII
NEFVDIERYPDLPYVYVNSSGTIENYKPIQVVSACSLETYAFPFDVQNCSLTFKSILHTV
EDVDLAFLRSPEDIQHDKKAFLNDSEWELLSVSSTYSILQSSAGGFAQIQFNVVMRRHPL
VYVVSLLIPSIFLMLVDLGSFYLPPNCRARIVFKTSVLVGYTVFRVNMSNQVPRSVGSTP
LIGHFFTICMAFLVLSLAKSIVLVKFLHDEQRGGQEQPFLCLRGDTDADRPRVEPRAQRA
VVTESSLYGEHLAQPGTLKEVWSQLQSISNYLQTQDQTDQQEAEWLVLLSRFDRLLFQSY
LFMLGIYTITLCSLWALWGGV

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB7256 Download

>pF1KB7256  4436 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTTGTCAAGT
GTAATGGCTCCCCTGTGGGCCTGCATCCTGGTGGCTGCAGGAATTCTAGCCACAGATACA
CATCATCCCCAGGATTCTGCTCTGTATCATCTCAGCAAGCAGCTATTACAGAAATATCAT
AAAGAAGTGAGACCTGTTTACAACTGGACCAAGGCCACCACAGTCTACCTGGACCTGTTC
GTCCATGCTATATTGGATGTGGATGCAGAGAATCAAATATTAAAGACAAGTGTATGGTAC
CAAGAGGTCTGGAATGATGAATTTTTATCCTGGAACTCCAGCATGTTTGATGAGATTAGA
GAGATCTCCCTACCTCTAAGTGCCATCTGGGCCCCCGATATCATCATCAATGAGTTTGTG
GACATTGAAAGATACCCTGACCTTCCCTATGTTTATGTGAACTCATCTGGGACCATTGAG
AACTATAAGCCCATCCAGGTGGTCTCTGCGTGCAGTTTAGAGACATATGCTTTTCCATTT
GATGTCCAGAATTGCAGCCTGACCTTCAAGAGCATTCTGCATACAGTGGAAGACGTAGAC
CTGGCCTTTCTGAGGAGCCCAGAAGACATTCAGCATGACAAAAAGGCGTTTTTGAATGAC
AGTGAGTGGGAACTTCTATCTGTGTCCTCCACATACAGCATCCTGCAGAGCAGCGCTGGA
GGATTTGCACAGATTCAGTTTAATGTGGTGATGCGCAGGCACCCCCTGGTCTATGTCGTG
AGTCTGCTGATTCCTAGCATCTTTCTCATGCTGGTGGACCTGGGGAGCTTCTACCTGCCA
CCCAACTGCCGAGCCAGGATTGTGTTCAAGACCAGTGTGCTGGTGGGCTACACCGTCTTC
AGGGTCAACATGTCCAACCAGGTGCCACGGAGTGTAGGGAGCACCCCTCTGATTGGGCAC
TTCTTCACCATCTGCATGGCCTTCTTGGTTCTCAGCTTAGCTAAGTCCATCGTGTTGGTC
AAATTCCTCCATGATGAGCAGCGTGGTGGACAGGAGCAGCCCTTCTTGTGCCTTCGAGGG
GACACCGATGCTGACAGGCCTAGAGTGGAACCCAGGGCCCAACGTGCTGTGGTAACAGAG
TCCTCGCTGTATGGAGAGCACCTGGCCCAGCCAGGAACCCTGAAGGAAGTCTGGTCGCAG
CTTCAATCTATCAGCAACTACCTCCAAACTCAGGACCAGACAGACCAACAGGAGGCAGAG
TGGCTGGTCCTCCTGTCCCGCTTTGACCGACTGCTCTTCCAAAGCTACCTTTTCATGCTG
GGGATCTACACCATCACTCTGTGCTCCCTCTGGGCACTGTGGGGCGGCGTGGTTTAAACG
AATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCC
GGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACT
AGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAAC
TATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCC
ACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTA
GCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTT
CCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCA
GCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTG
CCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCG
TTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGG
CTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGG
CTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAAT
GAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCA
GCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCG
GGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGAT
GCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAA
CATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTG
GACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATG
CCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTG
GAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTAT
CAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGAC
CGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGC
CTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGC
CCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAA
CGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGC
GTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTC
AAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAG
CTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCT
CCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTA
GGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGC
CTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGC
AGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTT
GAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCT
GAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGC
TGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCA
AGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTA
AGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGG
AAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGC
AGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCA
TACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTT
TACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGAT
TATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGG
CCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGA
ACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACC
TGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCC
CCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACT
GGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGC
CGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGC
CATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGT
TTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT