GENSCAN 1.0	Date run: 30-Jan-118	Time: 11:04:51

Sequence gi568815589f:126240508_126603260 : 362753 bp : 46.56% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5518   5530   13  0  1   61  116     9 0.217   1.29
 1.02 Intr +  32482  32544   63  2  0  107   65    28 0.017   1.09
 1.03 Intr +  54292  54474  183  2  0   71   86    48 0.043   2.66
 1.04 Intr +  64518  64692  175  1  1   75   20   128 0.056   3.70
 1.05 Term +  66174  66303  130  0  1   73   47    85 0.228   0.55
 1.06 PlyA +  67930  67935    6                              -0.45

 2.00 Prom +  69301  69340   40                              -2.96
 2.01 Init +  72275  72332   58  1  1   97   73    36 0.549   4.47
 2.02 Intr +  86207  86343  137  0  2   37   85    69 0.251   1.79
 2.03 Intr +  86684  86789  106  1  1   29   94   121 0.481   6.59
 2.04 Intr +  96348  96436   89  1  2   17   69    64 0.001  -2.91
 2.05 Intr + 100001 100123  123  1  0   70   86   132 0.005  11.98
 2.06 Intr + 140557 140664  108  0  0   85  101    54 0.205   6.88
 2.07 Intr + 146055 146151   97  2  1   84   94   129 0.448  12.68
 2.08 Intr + 151559 151688  130  0  1   99   92   103 0.981  11.55
 2.09 Intr + 153043 153208  166  1  1   38   69   123 0.243   5.36
 2.10 Intr + 159001 159145  145  0  1   75   80    14 0.035  -0.84
 2.11 Intr + 161731 161794   64  2  1   84   99    26 0.149   1.08
 2.12 Intr + 167913 168047  135  0  0   78  110    11 0.020   1.98
 2.13 Intr + 181347 181441   95  0  2  128   91    50 0.263   8.91
 2.14 Intr + 188356 188495  140  2  2   82   80    53 0.144   4.08
 2.15 Intr + 208608 208895  288  2  0   64   41   165 0.438   6.84
 2.16 Intr + 209525 209655  131  1  2   93   64    37 0.571   1.29
 2.17 Intr + 211674 211818  145  0  1   63   98    27 0.500   1.48
 2.18 Intr + 228262 228446  185  0  2  114   33    53 0.031   0.99
 2.19 Intr + 229930 230020   91  1  1   92   59    33 0.010   0.80
 2.20 Intr + 240486 240570   85  2  1   84    1    86 0.019  -1.11
 2.21 Intr + 240862 240917   56  2  2  123   84    18 0.130   3.60
 2.22 Intr + 243466 243589  124  0  1   89   27    94 0.110   3.56
 2.23 Intr + 246792 246839   48  1  0   76   69    52 0.113   0.75
 2.24 Term + 248030 248190  161  0  2   73   49   158 0.356   8.50
 2.25 PlyA + 250782 250787    6                               1.05

 3.16 PlyA - 251076 251071    6                               1.05
 3.15 Term - 255364 255296   69  1  0   82   48    49 0.267  -1.76
 3.14 Intr - 257411 257176  236  0  2   51   80   134 0.403   6.31
 3.13 Intr - 258294 258251   44  2  2  118   64    14 0.137  -0.12
 3.12 Intr - 264066 263867  200  0  2   83   42   137 0.190   6.75
 3.11 Intr - 264504 264242  263  1  2   75   53   103 0.124   2.71
 3.10 Intr - 273291 273195   97  0  1   90   47    49 0.243   0.58
 3.09 Intr - 274217 274083  135  2  0   63   27    81 0.170   0.26
 3.08 Intr - 281407 281350   58  0  1   81   81    51 0.319   2.59
 3.07 Intr - 285201 284976  226  1  1   93   89    69 0.383   4.54
 3.06 Intr - 316981 316907   75  2  0   45   86    63 0.043   1.29
 3.05 Intr - 317820 317679  142  0  1   23   72   101 0.005   1.93
 3.04 Intr - 328566 328486   81  0  0   59   60    83 0.021   2.43
 3.03 Intr - 332073 331959  115  2  1   95   86    30 0.030   3.95
 3.02 Intr - 343001 342916   86  2  2  113   81    14 0.072   1.82
 3.01 Intr - 348495 348365  131  1  2   76   38   108 0.176   5.01

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 100013 100123  111  1  0   94   86   136 0.963  14.21
S.002 Init - 126671 126543  129  2  0   79   91   110 0.993  10.55
S.003 Term - 130754 130583  172  1  1   62   50   186 0.986   9.50
S.004 Init - 168565 168460  106  1  1   71   86    74 0.833   5.88
S.005 Init + 207451 207518   68  0  2   45   94   137 0.894   8.55
S.006 Init - 323981 323912   70  2  1  100   71    70 0.917   7.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:126240508_126603260|GENSCAN_predicted_peptide_1|187_aa
MTTEGNFQDLLFILGVLKFHNNMPKYEWAPIPSPVNDAAHICRGSSIKTLYQQNHGSPWP
AIGPQLPCHATPLELTLDCLPETGRQVVSMPMSTEFQWTHNEWESNDCQSNQKASVLLLR
LSGMLKAPRGHTPSANQNLLQTERRKLGQTQAEEGAVGNVALGFMSAGVHAASRALCKAV
KAIVGLG

>gi568815589f:126240508_126603260|GENSCAN_predicted_CDS_1|564_bp
atgacaacagaaggaaatttccaggatcttctctttatacttggtgttctgaaatttcac
aacaatatgcctaagtatgaatgggctcccatcccgagtcccgtgaatgatgcagcccac
atctgcagagggagctcgataaagaccctttatcagcagaaccatggctccccatggcca
gccatcggaccccagctcccctgtcacgctactcccctggagctgaccctggactgcctg
ccagagacagggaggcaagtggtttccatgcccatgagcacggaattccagtggacccac
aatgagtgggagtccaatgactgtcaaagcaatcagaaggcaagcgtgttacttctgcgg
ctaagtgggatgctgaaagccccaagaggccacactccctctgcaaaccagaacttgctt
caaacagaaaggaggaaattgggccaaactcaggctgaggaaggggctgtgggaaatgtg
gccctgggcttcatgtctgcaggggtccatgctgcctccagggctctgtgcaaggctgtg
aaggcgatagtgggtctggggtga

>gi568815589f:126240508_126603260|GENSCAN_predicted_peptide_2|968_aa
MKEHTNMLKGPRSLYHRWQAPAPGGPEPGPPPRPAEGAAAATAVVAAAARPRPAPPPPPP
PPPLSSPERAAAAGARARPGGERREKLGDPSASSAPKARAALEIISQRLYARLGERSEWN
HLDLMTCEVKDQSTMPEVKDLSEALPETSMDPITGVGVVASRNRAPTGYDVVAQTADGVD
ADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQ
EVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGPEQEVGSAPLELKDKPR
LVLLLKYGGAVKSQKGGEWMPAVQKEIDVHCLQSTEIQGAKRGNTFLASIRAAPPPSVTC
RASPVSAGKKRFRCCWDRGWEEPQEAVINCDMDFELHFHSGKKWFGGRPDGSGSGVCACS
GPRQGAGAAPSFCLAIHFLLKVATANGAFSTRGHISLTLPATFRGRNSTRTDYEYQHSNL
YAISGVPVALVFSGYVLVARGGIAFLTLASLRFFAPQRIFVITDNWLKRWWGHSFTGQLL
RKLPCAQPWGLDWQRAPGSEWELRAHGAPTHQLDATCHRYKYNLQKSDVLVPLLRRLGGR
KHVLQSTEPSWQMATAVEKTRRPFPLQAEHSMRDALGLLTSNIRVNRESSAVKFMSQSGL
AYAQSLGGPIRHAQPGLPGRMCILNNRPSLIPGVHVEAIQPALSPNYLLVILLESGTQKL
KDPLVAPQGPHDVLQSAENGHQDSWQAGSWLSLDPTSMQQLKRLRHRALRIDVETQSIEK
NFQRTALDLHEVVQPSTAPWTLEGGTALKEEPVPASCVTFILLPAPGDSPVTDQRPDSRA
MDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEVSKPSGEGRAGLGHRLHTGVSP
TTVTIVTVLLVHREGRSLCTTWEEGGSTHLRKSGLKKLSDWPDSHSSNPELNRGLSVTLA
EYMTVFIY

>gi568815589f:126240508_126603260|GENSCAN_predicted_CDS_2|2907_bp
atgaaggagcacaccaatatgctcaagggccccagaagcctctaccacagatggcaagcg
ccagcgccgggaggcccggagcccggcccgccgccgcggcccgcggagggagccgccgcc
gccactgccgttgtcgccgccgccgccaggccgcgccccgcccctccgccgccgccgccg
ccgccgccgctctcgagccccgagcgcgccgcggctgccggtgcccgggctcggcctggc
ggcgagaggcgggagaagctgggggacccgagtgccagcagcgcccccaaggcccgggca
gccttggaaattatctcacagaggctgtatgcccgcttaggggagaggtcagaatggaac
catctggacctgatgacctgcgaggtgaaagaccagtccaccatgcctgaagtcaaagac
ctctcagaagccttgccagaaacgtcaatggatcccatcacgggagtcggggtggtggct
tctcggaaccgagccccgacaggctatgacgtagttgcacagacagcagatggtgtggat
gctgacctctggaaagacggcttatttaaatccaaggttaccagatacctgtgtttcaca
agatcattttccaaagaaaatagtcatctggggaacgtgttagtagatatgaagctcatt
gacatcaaggacacactgcctgtgggcttcatcccaattcaggagacggtggacacacag
gaagtggcttttaggaagaagaggctgtgcattaaatttattccacgggattcaacggaa
gctgcgatttgtgacattcggatcatgggccggaccaagcaggccccgcctcagtacacg
tttattgggcctgagcaggaagtaggatcagctccattggaactcaaggacaaaccacga
ctggtgctgctcctaaaatatggaggggcagtcaaaagtcagaaagggggtgagtggatg
ccagctgtccagaaggaaatagatgttcactgtcttcagtcaactgaaatccagggggcc
aagagaggaaacaccttcctggcctctatcagagcagcccctccaccgtctgtcacatgc
agggcgtcacctgtttctgctgggaagaagaggttccgctgctgctgggacagaggttgg
gaagagccccaggaggcagtaataaattgtgacatggattttgagctccacttccatagt
ggcaagaaatggtttgggggcaggcctgatggatccggatccggggtctgtgcctgcagt
gggcccaggcagggggctggggcggctccctccttctgcctggcgatccacttcctgctg
aaagtggccactgcaaatggagccttttccacaagagggcacatctccctaacacttcct
gccaccttccgaggcaggaacagcacccggacggactacgagtaccagcactccaatttg
tatgccatatcaggggtccctgtggcccttgtcttcagtggatatgttctcgtggctcgg
ggtggcattgcatttctgaccctggcttccctgaggttcttcgctccacagaggattttc
gtaatcaccgacaactggctcaagcggtggtgggggcattcgttcactgggcagttactg
aggaaactcccatgtgcccagccctggggcctggactggcagagagccccgggcagtgag
tgggagctcagagcacacggggcccccacacaccaactggatgcgacctgccaccggtac
aaatacaacctgcagaagtcggatgtgctggtccctctgttgagaaggctcggtggccgc
aagcacgtattgcagtccacagaaccatcctggcagatggcaacggctgtagagaagacc
cgcaggccctttcccttgcaggctgagcactccatgagagatgcccttggcctcctcaca
tctaacatcagagttaaccgtgagagctctgcagtcaagttcatgtcgcagtctggtctc
gcctatgcccaaagcctgggagggcccatcaggcacgcgcaaccagggctcccagggaga
atgtgcattttaaacaatagacccagcctaattcctggtgttcacgtggaggccattcag
ccagccctgagccccaactacttgctggtcattctacttgaatctgggacacaaaagctc
aaagaccctttggtggctccccagggacctcatgatgtccttcagtctgctgagaatggc
catcaggactcctggcaggctggttcttggttgtctctggaccctacttctatgcaacag
ttaaaaaggctgagacacagagctctaagaattgatgtggaaacacagtcaattgaaaaa
aactttcagagaactgccctggacctgcatgaggttgtgcagcccagcactgcaccctgg
accctggagggagggactgccctgaaggaggagcctgtccctgccagctgtgtcaccttc
atcctgctgccagcccctggtgactctcccgttacagatcagagaccagactccagggca
atggatggtgtgccttttatgatttcagagaagttttcttgtgttccagaaagtatgcag
ccctttgatctcctgggaatcaccatcaaatctctagcagaaatcgaaaaagaggtaagc
aagccatcaggggaggggagggcaggcctgggccatcgcctgcacaccggcgtctctccc
accaccgtcaccatcgttaccgttctccttgtccacagagaagggcgatccctctgcacc
acgtgggaggaaggggggtccacccatttacggaagtctggactcaagaagttaagtgac
tggccagattcccacagcagcaacccagagctgaacaggggtctgagtgtgaccctggct
gaatacatgaccgtcttcatctactga

>gi568815589f:126240508_126603260|GENSCAN_predicted_peptide_3|652_aa
XTSDAASVMMAATNPHGSTWPAVHVELLLPVDFLCSDDLGGNGKGDLAGQRIIADEDTQV
PRAQAFCPRSHSQPHLTVGTTATQLENLMQWEQLDHGVAGAEWQHSTAKGKGKKRAMVLA
GVIDPDHQEDIGRCSTMEAGPQKTLAELFDPLPRGQMKPGASCDAVPHTSQQMAAENKAP
DRWSPGPMPSKPDLLDRRKKCEEWVSGSSQGMACGGEATLEQLHAPVRKSSFSSSRLSHT
TPLLGGRKLHIPARVPGRTFFPRPTIDKSSWTSWSLHDDSVQRESRPGPVGLNTDTGQGK
LTERLGRVELGGLLGPLQSTRIPDQSERGWARPRSLWEPPQVHEVRTPQGAKYVMGLLNS
SSRKPWLLLAAVIPEPQGHIKGGHHPRSHGRHRCPLWVPQGSSGPQNHTGLCERSIGSQP
GSPLPAQHQSHDKVLLLCHPGVLRRPPPPGASSGLREGEVAASLIHRNQELALLWAAQDL
QQEAVPAEAEASTDAGSAAPNRSIKPPHPRANSWGPKDVRSPYSEESGHSPVPDTTESHT
KHSRGLQTRKGSSTSVGVGVLTRTPGDSEQLFGLETLHVFFQQLQGQLKSLLPTWAMVLE
TLERLHTQREAPAPESVRKCFTRRKAVHEQTVYKLQVHTVLACAVFHNSHKH

>gi568815589f:126240508_126603260|GENSCAN_predicted_CDS_3|1959_bp
nggacaagcgatgctgcttctgtcatgatggctgccactaatccacatggctccacttgg
cctgctgtccatgtggagctgctcctccctgtggacttcctgtgctctgatgaccttgga
ggaaacggcaagggagatctggctggccagaggataattgctgatgaggacactcaggtt
ccgagagctcaggctttttgcccaaggtcacacagccagccacaccttacagtgggaacc
acagccactcaattggaaaacctaatgcagtgggagcaactggatcatggggtggcaggg
gccgaatggcagcactcaactgccaaaggcaagggaaagaagcgagctatggtgttggct
ggggtgattgatccagatcaccaagaggacattgggcgctgctccacaatggaggcaggt
cctcagaaaacacttgcagaattatttgatcctcttccaaggggacaaatgaagcctggt
gccagctgtgatgcagtgccccataccagccagcagatggcagcagagaacaaggcacct
gaccggtggagcccaggtccaatgccctccaagccagatcttttggatcggaggaagaag
tgtgaggaatgggtctcagggtcatctcaagggatggcgtgtggtggggaagccaccctg
gagcagcttcatgctcccgtccgaaagagctccttcagcagctcgcggctgagccacacg
acgcctctgctgggaggcaggaagttgcatattcctgcccgtgtacccggcagaacgttc
tttccacgtcctaccattgacaaatcctcttggacttcctggtcacttcatgatgacagc
gtgcagagggagagcaggcctgggccagtgggcttgaacaccgatactggccagggcaag
ctgacggagaggctggggcgggtggagctggggggcttgctcgggcctctccagtcgacc
cgcattcccgaccaaagcgagcgcggctgggcccggccccgcagtctatgggagccaccc
caggtccacgaggtccggacgccgcagggggccaagtatgtaatgggtttgctcaattcc
tcctccagaaagccctggttgctgctggctgctgttatcccagagccccaggggcacatc
aagggagggcaccacccgaggagccacggcagacataggtgccccctgtgggtgccacag
ggctcctcaggtccccagaaccacactggcttatgtgaacggagcatcggcagccagcct
ggcagccccctccctgctcagcatcagtcccatgacaaggtcctgctgctgtgccaccca
ggagtcctgagaaggccacccccaccaggggcatcctcgggtctcagggagggagaagtg
gccgcttcccttatccacagaaatcaagagctagcactactgtgggctgcccaggacctg
cagcaggaggccgtccccgctgaggcagaggcttccacggacgcaggtagtgcagccccc
aaccgcagcatcaagcctccacatccaagagccaactcttggggacccaaagatgtcagg
tccccatactctgaggaatcaggacacagcccagtgcctgacaccacagagtctcatact
aaacactctagagggctccagacgagaaaaggcagcagtacttcagtgggtgtgggcgtt
ttgacaaggaccccaggtgactctgagcaactgttcggtttggaaaccctgcacgtcttc
ttccagcagctgcagggccagctgaagtccttgcttcctacttgggccatggttctagag
acattggagaggctgcatacccagcgggaagccccagctccagaaagcgtgagaaagtgc
ttcactaggaggaaggctgttcacgagcagacagtgtacaagctgcaggttcacacagtg
ctggcctgtgcggtgtttcacaatagtcataaacactga