Result of FASTA (omim) for pF1KB7107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7107, 229 aa
  1>>>pF1KB7107     229 - 229 aa - 229 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1138+/-0.000566; mu= 13.9215+/- 0.035
 mean_var=79.9449+/-16.484, 0's: 0 Z-trim(105.5): 122  B-trim: 0 in 0/50
 Lambda= 0.143443
 statistics sampled from 14100 (14223) to 14100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.336), E-opt: 0.2 (0.154), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(92320)
NP_001268649 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268646 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268647 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268648 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_001268645 (OMIM: 191339) polyubiquitin-B precur ( 229) 1456 311.9 6.3e-85
NP_061828 (OMIM: 191339) polyubiquitin-B precursor ( 229) 1456 311.9 6.3e-85
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 1443 309.6   9e-84
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128)  483 110.3 1.7e-24
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128)  483 110.3 1.7e-24
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128)  483 110.3 1.7e-24
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128)  483 110.3 1.7e-24
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128)  483 110.3 1.7e-24
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128)  483 110.3 1.7e-24
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135)  483 110.3 1.8e-24
XP_006722934 (OMIM: 191321) ubiquitin-60S ribosoma ( 156)  483 110.4 1.9e-24
XP_005260111 (OMIM: 191321) ubiquitin-60S ribosoma ( 156)  483 110.4 1.9e-24
XP_005260110 (OMIM: 191321) ubiquitin-60S ribosoma ( 156)  483 110.4 1.9e-24
XP_005260109 (OMIM: 191321) ubiquitin-60S ribosoma ( 156)  483 110.4 1.9e-24
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156)  482 110.2 2.2e-24
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156)  482 110.2 2.2e-24
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156)  482 110.2 2.2e-24
XP_016882687 (OMIM: 191321) ubiquitin-60S ribosoma ( 203)  483 110.5 2.4e-24
NP_006147 (OMIM: 603171) NEDD8 precursor [Homo sap (  81)  303 72.9   2e-13
NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514)  236 59.7 1.1e-08
NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384)  224 57.1 5.1e-08
NP_001307951 (OMIM: 191321) ubiquitin-60S ribosoma (  99)  204 52.5 3.3e-07
NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157)  197 51.2 1.3e-06
NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165)  169 45.4 7.4e-05
NP_004553 (OMIM: 167000,211980,600116,602544) E3 u ( 465)  165 45.0 0.00028
NP_054642 (OMIM: 167000,211980,600116,602544) E3 u ( 437)  162 44.4 0.00041
XP_011534165 (OMIM: 167000,211980,600116,602544) E ( 464)  162 44.4 0.00043
NP_001988 (OMIM: 134690) ubiquitin-like protein fu ( 133)  155 42.4 0.00047
NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165)  154 42.3 0.00063
XP_016869742 (OMIM: 615211) E3 ubiquitin-protein l ( 729)  161 44.3 0.00069
XP_016866397 (OMIM: 167000,211980,600116,602544) E ( 503)  159 43.8  0.0007
NP_690856 (OMIM: 615211) E3 ubiquitin-protein liga ( 802)  161 44.4 0.00074
NP_981957 (OMIM: 611127) ubiquitin-like protein 4B ( 174)  153 42.1 0.00076
XP_011526244 (OMIM: 607990) E3 ubiquitin-protein l ( 758)  160 44.1 0.00082
NP_001276979 (OMIM: 607990) E3 ubiquitin-protein l ( 793)  160 44.2 0.00085
NP_001276981 (OMIM: 607990) E3 ubiquitin-protein l ( 793)  160 44.2 0.00085
NP_001276980 (OMIM: 607990) E3 ubiquitin-protein l ( 793)  160 44.2 0.00085
NP_001041666 (OMIM: 607990) E3 ubiquitin-protein l ( 793)  160 44.2 0.00085
NP_037414 (OMIM: 607990) E3 ubiquitin-protein liga ( 806)  160 44.2 0.00086
NP_002865 (OMIM: 600062) UV excision repair protei ( 409)  156 43.1 0.00093
NP_005868 (OMIM: 605595) splicing factor 3A subuni ( 793)  154 42.9   0.002
NP_079230 (OMIM: 616388) ubiquitin domain-containi ( 227)  146 40.8  0.0025
NP_001257292 (OMIM: 600061) UV excision repair pro ( 308)  143 40.3  0.0049
NP_001257291 (OMIM: 600061) UV excision repair pro ( 362)  143 40.3  0.0055
NP_005044 (OMIM: 600061) UV excision repair protei ( 363)  143 40.3  0.0055
XP_024307399 (OMIM: 600061) UV excision repair pro ( 382)  143 40.4  0.0057


>>NP_001268649 (OMIM: 191339) polyubiquitin-B precursor   (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1646.4  bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>NP_001268646 (OMIM: 191339) polyubiquitin-B precursor   (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1646.4  bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>NP_001268647 (OMIM: 191339) polyubiquitin-B precursor   (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1646.4  bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>NP_001268648 (OMIM: 191339) polyubiquitin-B precursor   (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1646.4  bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>NP_001268645 (OMIM: 191339) polyubiquitin-B precursor   (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1646.4  bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>NP_061828 (OMIM: 191339) polyubiquitin-B precursor [Ho  (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1646.4  bits: 311.9 E(92320): 6.3e-85
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sapiens  (685 aa)
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1625.5  bits: 309.6 E(92320): 9e-84
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220                    
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC           
       ::::::::::::::::::::::::::::::::::::::::::::::::            
NP_066 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
              190       200       210       220       230       240

NP_066 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
              250       260       270       280       290       300

>--
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1625.5  bits: 309.6 E(92320): 9e-84
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:229-456)

                                             10        20        30
pF1KB7                               MQIFVKTLTGKTITLEVEPSDTIENVKAKI
                                     ::::::::::::::::::::::::::::::
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
      200       210       220       230       240       250        

               40        50        60        70        80        90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
      260       270       280       290       300       310        

              100       110       120       130       140       150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
      320       330       340       350       360       370        

              160       170       180       190       200       210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
      380       390       400       410       420       430        

              220                                                  
pF1KB7 YNIQKESTLHLVLRLRGGC                                         
       ::::::::::::::::::                                          
NP_066 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR
      440       450       460       470       480       490        

>--
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1625.5  bits: 309.6 E(92320): 9e-84
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:457-684)

                                             10        20        30
pF1KB7                               MQIFVKTLTGKTITLEVEPSDTIENVKAKI
                                     ::::::::::::::::::::::::::::::
NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
        430       440       450       460       470       480      

               40        50        60        70        80        90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
        490       500       510       520       530       540      

              100       110       120       130       140       150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
        550       560       570       580       590       600      

              160       170       180       190       200       210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
        610       620       630       640       650       660      

              220         
pF1KB7 YNIQKESTLHLVLRLRGGC
       :::::::::::::::::: 
NP_066 YNIQKESTLHLVLRLRGGV
        670       680     

>>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr  (128 aa)
 initn: 483 init1: 483 opt: 483  Z-score: 561.5  bits: 110.3 E(92320): 1.7e-24
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::.                                           
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
               70        80        90       100       110       120

>>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr  (128 aa)
 initn: 483 init1: 483 opt: 483  Z-score: 561.5  bits: 110.3 E(92320): 1.7e-24
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::.                                           
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
               70        80        90       100       110       120

>>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote  (128 aa)
 initn: 483 init1: 483 opt: 483  Z-score: 561.5  bits: 110.3 E(92320): 1.7e-24
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::.                                           
NP_003 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
               70        80        90       100       110       120




229 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:54:22 2019 done: Thu Oct 24 21:54:22 2019
 Total Scan time:  2.870 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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