Result of FASTA (ccds) for pF1KB7107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7107, 229 aa
  1>>>pF1KB7107     229 - 229 aa - 229 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8594+/-0.0015; mu= 9.1694+/- 0.090
 mean_var=71.8732+/-14.408, 0's: 0 Z-trim(97.6): 64  B-trim: 0 in 0/48
 Lambda= 0.151283
 statistics sampled from 5113 (5164) to 5113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.34), E-opt: 0.2 (0.155), width:  16
 Scan time:  0.870

The best scores are:                                      opt bits E(33420)
CCDS11177.1 UBB gene_id:7314|Hs109|chr17           ( 229) 1456 328.0 3.1e-90
CCDS9260.1 UBC gene_id:7316|Hs109|chr12            ( 685) 1443 325.4 5.9e-89
CCDS12382.1 UBA52 gene_id:7311|Hs109|chr19         ( 128)  483 115.6 1.6e-26
CCDS33202.1 RPS27A gene_id:6233|Hs109|chr2         ( 156)  482 115.4 2.2e-26
CCDS9621.1 NEDD8 gene_id:4738|Hs109|chr14          (  81)  303 76.2 7.1e-15


>>CCDS11177.1 UBB gene_id:7314|Hs109|chr17                (229 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1733.6  bits: 328.0 E(33420): 3.1e-90
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220         
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
              190       200       210       220         

>>CCDS9260.1 UBC gene_id:7316|Hs109|chr12                 (685 aa)
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1710.7  bits: 325.4 E(33420): 5.9e-89
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
              130       140       150       160       170       180

              190       200       210       220                    
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC           
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS92 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
              190       200       210       220       230       240

CCDS92 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
              250       260       270       280       290       300

>--
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1710.7  bits: 325.4 E(33420): 5.9e-89
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:229-456)

                                             10        20        30
pF1KB7                               MQIFVKTLTGKTITLEVEPSDTIENVKAKI
                                     ::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
      200       210       220       230       240       250        

               40        50        60        70        80        90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
      260       270       280       290       300       310        

              100       110       120       130       140       150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
      320       330       340       350       360       370        

              160       170       180       190       200       210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
      380       390       400       410       420       430        

              220                                                  
pF1KB7 YNIQKESTLHLVLRLRGGC                                         
       ::::::::::::::::::                                          
CCDS92 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR
      440       450       460       470       480       490        

>--
 initn: 1443 init1: 1443 opt: 1443  Z-score: 1710.7  bits: 325.4 E(33420): 5.9e-89
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:457-684)

                                             10        20        30
pF1KB7                               MQIFVKTLTGKTITLEVEPSDTIENVKAKI
                                     ::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
        430       440       450       460       470       480      

               40        50        60        70        80        90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
        490       500       510       520       530       540      

              100       110       120       130       140       150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
        550       560       570       580       590       600      

              160       170       180       190       200       210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
        610       620       630       640       650       660      

              220         
pF1KB7 YNIQKESTLHLVLRLRGGC
       :::::::::::::::::: 
CCDS92 YNIQKESTLHLVLRLRGGV
        670       680     

>>CCDS12382.1 UBA52 gene_id:7311|Hs109|chr19              (128 aa)
 initn: 483 init1: 483 opt: 483  Z-score: 589.9  bits: 115.6 E(33420): 1.6e-26
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       ::::::::::::::::.                                           
CCDS12 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
               70        80        90       100       110       120

>>CCDS33202.1 RPS27A gene_id:6233|Hs109|chr2              (156 aa)
 initn: 482 init1: 482 opt: 482  Z-score: 587.4  bits: 115.4 E(33420): 2.2e-26
Smith-Waterman score: 482; 97.4% identity (98.7% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       :::::::::::::::: .                                          
CCDS33 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
               70        80        90       100       110       120

>>CCDS9621.1 NEDD8 gene_id:4738|Hs109|chr14               (81 aa)
 initn: 314 init1: 303 opt: 303  Z-score: 380.8  bits: 76.2 E(33420): 7.1e-15
Smith-Waterman score: 303; 57.9% identity (82.9% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
       : : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
CCDS96 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
       :   :.::::: ::::                                            
CCDS96 ILGGSVLHLVLALRGGGGLRQ                                       
               70        80                                        




229 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:54:21 2019 done: Thu Oct 24 21:54:22 2019
 Total Scan time:  0.870 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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