GENSCAN 1.0	Date run:  2-Oct-118	Time: 18:31:03

Sequence gi568815582r:79494463_79699902 : 205440 bp : 42.36% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -    462    457    6                               1.05
 1.10 Term -  12090  11932  159  0  0   94   51    58 0.193  -0.34
 1.09 Intr -  15385  15189  197  2  2   32   92   148 0.553   7.81
 1.08 Intr -  16778  16712   67  2  1   53   94    29 0.700  -2.44
 1.07 Intr -  17258  17220   39  2  0   89   85    68 0.700   4.10
 1.06 Intr -  17494  17416   79  0  1   30   84    73 0.644  -0.27
 1.05 Intr -  17733  17548  186  2  0   77   66   119 0.525   6.48
 1.04 Intr -  18156  18088   69  2  0   74   89    66 0.434   2.68
 1.03 Intr -  29745  29647   99  2  0   66   81   108 0.024   6.21
 1.02 Intr -  42804  42657  148  1  1   44   27   109 0.151  -1.23
 1.01 Init -  43436  43322  115  2  1   52  105   124 0.809  10.92
 1.00 Prom -  43905  43866   40                              -6.95

 2.00 Prom +  47508  47547   40                              -7.75
 2.01 Init +  47741  47915  175  1  1   24   80   199 0.716  12.26
 2.02 Term +  48127  48230  104  2  2   47   45    89 0.523  -2.04
 2.03 PlyA +  48581  48586    6                               1.05

 3.00 Prom +  53262  53301   40                              -4.45
 3.01 Init +  58699  58928  230  0  2   51   31   182 0.106   6.63
 3.02 Intr +  68448  68728  281  0  2   75  103   196 0.273  16.00
 3.03 Intr +  73750  73945  196  2  1   10   17   120 0.024  -5.35
 3.04 Intr +  77670  77797  128  0  2   69   85   125 0.991   9.70
 3.05 Term +  80727  80869  143  1  2   84   47   163 0.997   8.91
 3.06 PlyA +  81685  81690    6                               1.05

 4.02 PlyA -  82067  82062    6                               1.05
 4.01 Sngl -  83185  83024  162  1  0   61   42   217 0.912   8.75
 4.00 Prom -  83952  83913   40                              -5.75

 5.05 PlyA -  84015  84010    6                               1.05
 5.04 Term -  96045  95826  220  2  1   70   48   188 0.014   8.53
 5.03 Intr - 105485 104323 1163  2  2   79   84  1465 0.012 131.88
 5.02 Intr - 112078 111959  120  1  0   14   70   112 0.066   1.77
 5.01 Init - 119377 119318   60  1  0   74   93    47 0.187   5.10
 5.00 Prom - 121909 121870   40                              -5.85

 6.04 PlyA - 122017 122012    6                              -0.45
 6.03 Term - 122522 122412  111  2  0   99   54   105 0.803   5.78
 6.02 Intr - 130158 130000  159  0  0    6  100    97 0.239   1.96
 6.01 Init - 134182 133970  213  1  0   67   66   135 0.539   7.99
 6.00 Prom - 140013 139974   40                              -3.15

 7.02 PlyA - 140888 140883    6                               1.05
 7.01 Sngl - 150053 149658  396  2  0   32   36   268 0.097  11.00
 7.00 Prom - 154192 154153   40                              -8.35

 8.00 Prom + 154454 154493   40                              -7.15
 8.01 Init + 158025 158124  100  2  1   51  105    92 0.958   7.67
 8.02 Intr + 160817 160928  112  0  1   63    3   148 0.460   2.32
 8.03 Intr + 161863 161984  122  1  2   66   89    91 0.593   6.22
 8.04 Intr + 162483 162664  182  1  2    7   72    80 0.646  -3.03
 8.05 Intr + 164111 164365  255  1  0   33   96   227 0.390  14.72
 8.06 Term + 166111 166314  204  0  0   21   37   136 0.259  -1.81
 8.07 PlyA + 166862 166867    6                               1.05

 9.06 PlyA - 167135 167130    6                               1.05
 9.05 Term - 168317 168171  147  2  0   90   39    75 0.556  -0.28
 9.04 Intr - 168642 168511  132  0  0   65   94    87 0.958   6.92
 9.03 Intr - 173314 173209  106  0  1   58  110    48 0.081   3.30
 9.02 Intr - 194688 194601   88  1  1   61   93   127 0.940   8.61
 9.01 Init - 198172 198052  121  1  1   82  110    56 0.479   7.66
 9.00 Prom - 200904 200865   40                              -3.35


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 151146 151060   87  1  0   93   91    53 0.867   5.12
S.002 Init - 151340 151220  121  2  1   43   87    80 0.882   3.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_1|385_aa
MRTYIKPGIQGLKYRRCSINGDCHSEVQRFHILSVTSSASQRKTRKLRGWNRMFECDSVL
SQSRYELRIDSPNDPLYHSIKCADLAVEPPALPLKLTRTGIRGFIKEEKQPGMLMGAVGC
QIHNELPNCRAEGGFFSEESQLRCLDPRVEDERSVFQDKEKHCHSKSYGIMKQAVSTGSE
FAITGNNQKESITRNIGEEVRALGVRAAVWPICDWYFAAANQGGLCLQTEAEEILQAQWA
TECRLETPFRGWHDINKNNKGEGLERKDTEEALIRRGSSEPKKQNKFGAFVDNSGVISKP
GLKEHASPEKLRERQCHARPWAPTVNELHAQAKPWFQVFPTFSLLCMIPVPMQESLTLYG
CWAGDLQLLLCLPKTLRDIGHGHTL

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_1|1158_bp
atgagaacctacatcaagccaggaattcagggcctgaaatatagaaggtgctcaatcaac
ggcgactgtcattctgaggttcagaggtttcacattctatctgtgacctcgtctgcctca
caaaggaaaaccaggaaacttcgaggttggaacaggatgttcgagtgtgactctgtgcta
tctcaaagcagatatgaactgagaatagattcaccaaatgacccactttatcattcaata
aaatgtgctgatctggcagttgagcctcctgctctcccgttgaaactgacccgaacaggg
atcagagggtttatcaaagaggaaaagcaaccagggatgctgatgggcgcagttggatgc
cagattcataatgagctccccaactgccgggcagaaggaggtttcttctcagaagagagt
cagctcagatgcttagatccaagggtagaggatgaaagatctgtctttcaagataaagaa
aaacattgtcattcaaagagctatgggattatgaagcaggctgtctctacaggtagtgag
ttcgccatcacagggaataatcaaaaagaatccataacaaggaatattggagaagaagtt
cgtgcactgggtgtcagagcagcagtctggccaatctgtgactggtattttgctgcagct
aatcaaggtggcttatgtttgcagaccgaagcagaggaaattttgcaggcccaatgggct
actgaatgccgattggaaactccttttcggggttggcatgacattaataaaaataataag
ggagaaggtttggagagaaaagacacagaagaggcattgataagaagaggctcatcagag
cctaagaaacaaaataagtttggtgcttttgtggataacagtggagtgatatcaaaacca
ggcctaaaagagcacgcatccccagagaaattgagggagaggcaatgccatgccaggccc
tgggcccccactgtgaatgaattacacgctcaggccaagccctggtttcaggtcttcccc
acattctctctgctatgcatgattccagttcccatgcaggagagcctcaccctttatggg
tgctgggctggggatcttcagctgctgctttgcttgccaaagacgctaagagatattggt
catgggcacacactctga

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_2|92_aa
MGTLEGGGNRKSKRAPRSLRAGTQTGKRFSASGGLSLARSGVPKAPLVRVIFGPCHVVKV
STLGTVARSDDLSKAALGLENLASLDFLGLVH

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_2|279_bp
atgggaactttggaaggaggaggaaacaggaagtccaagcgagctccacgaagcctccgg
gcaggaacgcaaacaggaaagcggttctcagccagtggtggcctctcgctagctaggtct
ggtgtccccaaggcccccctggtgcgtgttatttttggaccatgccacgtggtgaaggtc
tccactctgggtacagtggccagatctgatgaccttagcaaagccgctcttggcctggag
aatcttgcaagcttggactttctggggctcgtgcactga

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_3|325_aa
MPAVMLMLCLGNSSGSLLRMAAVPQGTATPGKALAIATSPSWQRNLHSQQLAEWLPMEPG
LSGPLAQRQRPIEEGLVSKSNSNKTKAKILQASISNSNVSTGQQVHLCLLLSIHPFSKYQ
VSVTSRLALGGYTMETDSRTYAQEDLSYGLKAVPIKHWTFQTPKLNLNLADRSWKLCKGS
LAGMGVCGWPLMVPGVFHWVPVVTHKMTHRLIKSPGVGIRQTWVQIPVLSGKWEGLILEQ
FAGVKENSEISTTNFKAPKSCIGGGESGSNTTGAVFQRGVHMNLSTSFPLPYCEVVIAQA
LPNAMTPLSEKQAADHEGPPLATAD

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_3|978_bp
atgccagctgtcatgctgatgctctgcctcggcaacagctctgggtctcttttgagaatg
gcagccgttcctcaaggcacagcaactccagggaaggccttggccattgccacctctcca
tcatggcagagaaatctgcattcacagcagttggctgagtggcttccaatggagcctggt
ctctctggacccctggcccagagacagagacccatagaggaggggctggtatccaaatca
aattcaaacaaaacaaaagcaaaaatccttcaggcctcaatttcaaattcaaatgtgtct
actggtcagcaggttcatttgtgcctcctcctgtccattcatccgttcagcaaatatcaa
gtcagtgttacatctaggcttgcactaggtggttatactatggaaacagacagcagaact
tacgctcaggaggatttatcgtacgggctgaaggctgtacccataaagcactggactttc
cagacaccaaagctaaacctcaatctggcagataggagctggaagctctgcaaaggaagt
ctggcagggatgggtgtctgtggatggcccctaatggtccctggtgtcttccactgggtt
cctgttgtaactcacaagatgacccacaggcttattaagagcccaggtgttggaatcaga
cagacctgggttcaaattcctgttctatctggaaaatgggaaggcctcattttggagcaa
tttgctggagtcaaagaaaacagtgaaatttccacaaccaacttcaaagcccccaaatcc
tgtatcggtggaggggagtctggtagcaacaccacaggggccgtttttcaaagaggggtg
cacatgaatctcagtacaagtttccctctcccctattgtgaagtggtcattgcccaagcc
ttacccaatgccatgaccccattatcagaaaagcaggcagctgaccatgaaggcccaccc
ttggctactgctgattga

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_4|53_aa
MSGVRDNFRGAEDSDVPEALPFGGHPKPPWAMMTTATMHRVSPGHQIYAIFDL

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_4|162_bp
atgtcaggagttagagacaacttccgtggagcagaagacagtgatgttcccgaagccctg
ccctttggaggtcacccaaaacctccatgggctatgatgacaacagctaccatgcaccga
gtgtctcctggacaccagatctatgccatctttgacctgtaa

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_5|520_aa
MTIIIITITLLPNHPNVIGKEHSIMMGDAPRMSRSMSGVFSAQKNTSERSATPTLPPRTK
PIWRSGGGGGGGGRRMASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQ
CGRLIAGGSLSSTPMSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEA
LGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVS
AVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAG
GGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEE
VIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYK
EKYEKLVSSGFRENGSSSDNPSSPEFFMAMKEPQKSLSSGQQVAEAEIWDPISHLRPTLS
VDTDSAMQRVRGASLEAQLESLKLARAFGAMVLKPGMKEM

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_5|1563_bp
atgaccataatcatcatcactattacattactaccaaatcatcccaatgttattggaaag
gaacactccattatgatgggagatgctccgaggatgtcacggagcatgtctggtgttttc
agtgcacagaaaaacacatcagagagatcagcaacacccacgttgccaccaagaactaag
cccatctggcggagcggcggcggcggcggcggcggcggcaggagaatggcatcagaactg
gcaatgagcaactccgacctgcccaccagtcccctggccatggaatatgttaatgacttc
gatctgatgaagtttgaagtgaaaaaggaaccggtggagaccgaccgcatcatcagccag
tgcggccgtctcatcgccgggggctcgctgtcctccacccccatgagcacgccgtgcagc
tcggtgcccccttcccccagcttctcggcgcccagcccgggctcgggcagcgagcagaag
gcgcacctggaagactactactggatgaccggctacccgcagcagctgaaccccgaggcg
ctgggcttcagccccgaggacgcggtcgaggcgctcatcagcaacagccaccagctccag
ggcggcttcgatggctacgcgcgcggggcgcagcagctggccgcggcggccggggccggt
gccggcgcctccttgggcggcagcggcgaggagatgggccccgccgccgccgtggtgtcc
gccgtgatcgccgcggccgccgcgcagagcggcgcgggcccgcactaccaccaccaccac
caccacgccgccggccaccaccaccacccgacggccggcgcgcccggcgccgcgggcagc
gcggccgcctcggccggtggcgctgggggcgcgggcggcggtggcccggccagcgctggg
ggcggcggcggcggcggcggcggcggaggcggcgggggcgcggcgggggcggggggcgcc
ctgcacccgcaccacgccgccggcggcctgcacttcgacgaccgcttctccgacgagcag
ctggtgaccatgtctgtgcgcgagctgaaccggcagctgcgcggggtcagcaaggaggag
gtgatccggctgaagcagaagaggcggaccctgaaaaaccgcggctatgcccagtcctgc
cgcttcaagagggtgcagcagagacacgtcctggagtcggagaagaaccagctgctgcag
caagtcgaccacctcaagcaggagatctccaggctggtgcgcgagagggacgcgtacaag
gagaaatacgagaagttggtgagcagcggcttccgagaaaacggctcgagcagcgacaac
ccgtcctctcccgagtttttcatggccatgaaagagcctcaaaagtcactgtcctcaggc
caacaagtggcagaagctgagatctgggacccaataagtcacctccgccccactttaagt
gtagacacagacagcgctatgcagagggtccggggagcatcactggaagctcagctggaa
tctttaaagctggccagagcttttggtgcaatggtcttgaagcctggaatgaaggagatg
tag

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_6|160_aa
MSPFFTCDSLVVMRRPSCEEGETSGSGVAPRRGLAQQDTVKLPLGNLKTPEGNGSLHSGR
ALPHWVLLQLQPRMRENLERDIGWIRHELRGSIPWVRDEKEVHHLRGGCEHQIDFRGKAL
GDLKVSTWIPQLVQDTPLDLEESIQFHANQLVLMEQQGDQ

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_6|483_bp
atgtctccattcttcacttgtgactcacttgtggtcatgcgtaggcccagctgtgaggaa
ggtgaaacctccgggtcaggtgtagctcccaggagaggtttagcccagcaggacacagtg
aaattgcccctggggaacctgaagaccccagaaggaaatggaagcctgcactcgggcagg
gccttgccccactgggtccttctgcagctgcagccacggatgagggaaaatttggagaga
gatattggatggatcagacatgagttgagaggcagtattccctgggtaagagatgagaaa
gaagtccatcacctaagaggtggctgtgagcatcagatagacttcagaggcaaagcactg
ggagatttaaaggtgagcacatggatcccccaactggttcaggatacacctttagacctt
gaagagagtattcagttccatgcaaaccagttggttctcatggaacaacagggagaccaa
tga

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_7|131_aa
MTLRLSQVTAGSGPRASPLTIVEHVGGAFLKIDAQKGHMSVNPCTLSKPEILQVPFTSST
SKPPSELAEMQFQIISVLFSKWRQRLHMLVKVLPGKLQSLGVQCSGVAGKVTAKFQTHKG
AEVASGNQVME

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_7|396_bp
atgactctcagactcagccaggtcactgccggttccgggccgcgtgcttccccactgacc
atcgtagaacatgttggaggtgccttcttgaagatagatgctcagaaaggacatatgtca
gtcaatccctgcacactctctaagccagagattctccaagtgccgttcacatcatctaca
tccaaaccacctagtgagcttgctgaaatgcaattccaaatcatttcagtcctattctcg
aagtggagacagagactccacatgcttgtcaaggtgctcccagggaaactccagagtttg
ggggtccagtgctctggggttgctggaaaggtcacagccaaattccaaacccacaagggg
gctgaagttgcaagtggcaatcaagtcatggagtaa

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_8|324_aa
MGANLPGPECEKVHGEGDRTRSYSREGRKKKMGGAVLSTQNIVQSCPHGAYMLVLVHSWE
AETDDDDDDDVKKVRPPGTNGTVTTTERRVSQYELYPDSNSQDLYRQGSGDALYEPGMWE
TFSIAWALFIPCWGFAEFLLSSSLTIATLFVLSAVDLGVTDTRGKRAVFAVEGEFHAASR
QDNFIKDAESDFREYSGQPWKALGSFQSYPGQLSAPLCEELMVLGSSGQLQCAQEGISVI
IQRGQSWCGKWVFTCRQGLEQLTNMPTQREPQNNGKLTMERRVKEEMVNIRLVVHNPTTC
NVHLSTRQVYLGQKKNLMWLHHSV

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_8|975_bp
atgggagccaatcttcctggacctgaatgtgagaaagtccatggagagggggacagaact
aggagttactctagagagggaaggaagaagaagatgggaggtgctgttctaagcactcag
aatatagttcaaagctgtcctcatggagcttacatgctagttctggtccactcatgggaa
gctgaaacggatgatgatgatgatgatgatgtgaaaaaagtgagaccaccagggaccaac
ggaacagtcaccactactgaaagacgtgtctcacaatatgaactttacccagactcaaac
tcccaggacctctacaggcaaggctctggtgatgcactgtatgaacctggcatgtgggaa
actttcagcattgcctgggctctgtttatcccatgctggggttttgctgaatttcttctt
tcttcctccctgacaatcgccacgctctttgttctgtccgctgtggatttgggtgttaca
gatacaaggggtaagagagctgtgtttgctgtagaaggtgagttccacgcagccagccgt
caagataactttatcaaggacgcggaatcagatttcagagaatacagtggacagccttgg
aaggcacttggaagtttccagtcctatcctggccagctcagtgcacccctctgtgaagag
cttatggtccttgggagcagtggccagttacagtgtgcacaggaaggcatttcagtaatc
attcagcgaggtcagagctggtgcgggaaatgggtcttcacatgcaggcagggtttggag
cagcttacaaacatgcccacgcaaagggagccacaaaataatggcaaactgacaatggaa
cggagggtgaaggaagaaatggtgaatattagacttgtggtgcacaacccaacaacgtgc
aacgttcacttatcaaccaggcaggtttacttaggacagaagaaaaacctgatgtggcta
caccattctgtctga

>gi568815582r:79494463_79699902|GENSCAN_predicted_peptide_9|197_aa
MMWGNLEPQASMHSAFPPPAPQPNTKQKHLDHDQQSQHAPETETKIRGFRLLKAENKTKQ
NNNDNNNKIRQAPRGDLPSYCWLSALYCNHMSLGYPGERQESINQVRQHIPDPIGLQAAG
QGMGTLCSDMSTKESSENELLQAKQIKIKPFTKQLAVVLVCHTLCKEPLAKDLNLVLPSR
SFQSSEGDKQVSIYNGI

>gi568815582r:79494463_79699902|GENSCAN_predicted_CDS_9|594_bp
atgatgtggggaaacctggagccacaggcatccatgcattctgcatttcccccaccggca
ccacaaccaaacacaaaacaaaaacatttggaccatgaccagcaaagccagcatgcacca
gagacagaaactaaaatccgtggcttcaggctgctaaaagccgaaaacaaaacaaaacag
aacaacaacgacaacaacaacaaaataagacaggctcctcgtggtgacctcccatcctat
tgctggctctctgctctttactgcaaccacatgtcacttggataccccggagagcggcag
gaaagcatcaaccaggtaaggcagcacattccagatcccattggtctgcaagctgccggt
cagggcatgggcactctatgcagtgacatgtctactaaagaatcgtctgagaatgaactc
cttcaggcaaagcaaataaaaattaagccattcaccaaacaattagcagtggtcctggtg
tgccacaccctctgcaaagaacccttggcaaaagacttgaacttggtcttgccctccagg
agtttccagtccagtgagggggacaaacaagtctccatctacaatggaatatag