GENSCAN 1.0	Date run:  7-Nov-116	Time: 21:41:22

Sequence gi568815586r:54544716_54748303 : 203588 bp : 44.25% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5145   5270  126  0  0   96   84   156 0.815  15.79
 1.02 Intr +  22259  22372  114  2  0  115   93   187 0.995  21.46
 1.03 Intr +  24469  24651  183  1  0   75   89   358 0.999  33.50
 1.04 Intr +  24831  24897   67  0  1  106   84    30 0.948   3.31
 1.05 Intr +  25526  25642  117  1  0   86   53   102 0.960   7.16
 1.06 Intr +  27886  28026  141  0  0  106   66   170 0.995  17.15
 1.07 Intr +  28433  28533  101  1  2  118   61   208 0.999  20.01
 1.08 Intr +  28640  28765  126  2  0   76   30   205 0.998  13.29
 1.09 Intr +  28893  28994  102  0  0   86   23   122 0.652   4.79
 1.10 Intr +  30383  30503  121  2  1   72   74   148 0.989  12.30
 1.11 Intr +  30717  30785   69  2  0   79   82    27 0.599   0.58
 1.12 Intr +  30836  30917   82  1  1  117   95    24 0.999   5.21
 1.13 Intr +  31277  31385  109  0  1   70   94   190 0.981  17.14
 1.14 Intr +  31856  31986  131  2  2   59   52   146 0.995   8.44
 1.15 Term +  32510  32613  104  0  2  117   41   205 0.999  17.14
 1.16 PlyA +  32835  32840    6                              -3.64

 2.18 PlyA -  33037  33032    6                              -0.45
 2.17 Term -  33246  33112  135  0  0   92   49   159 0.995  10.42
 2.16 Intr -  36335  36229  107  0  2  102  103    34 0.978   6.23
 2.15 Intr -  37416  37261  156  1  0  104   53    73 0.972   5.38
 2.14 Intr -  38080  38017   64  1  1   99   47    34 0.976  -1.31
 2.13 Intr -  38533  38496   38  2  2  129  105    50 0.994   8.78
 2.12 Intr -  39605  39545   61  2  1   98  115    21 0.881   4.11
 2.11 Intr -  43801  43690  112  0  1   98   80   187 0.589  19.28
 2.10 Intr -  45898  45846   53  1  2   84   78    12 0.167  -2.49
 2.09 Intr -  59566  59475   92  2  2  109   74    62 0.604   6.61
 2.08 Intr -  64962  64918   45  1  0  103   95    47 0.596   5.28
 2.07 Intr -  87124  87023  102  2  0   56   87    61 0.612   2.95
 2.06 Intr -  87666  87436  231  1  0   66   85   145 0.602   9.74
 2.05 Intr -  90095  90069   27  0  0   82  105    33 0.052   2.49
 2.04 Intr - 100547 100458   90  0  0   87  113    17 0.152   4.07
 2.03 Intr - 100992 100891  102  1  0   95   94    14 0.202   2.85
 2.02 Intr - 102444 102406   39  1  0  123   84    27 0.331   4.00
 2.01 Init - 103588 103531   58  1  1   74   76   136 0.754  10.47
 2.00 Prom - 107623 107584   40                              -6.36

 3.00 Prom + 110788 110827   40                              -5.26
 3.01 Init + 114744 114824   81  2  0   79  100    63 0.424   7.63
 3.02 Intr + 121508 121572   65  1  2  119   78    45 0.515   4.12
 3.03 Term + 123765 123849   85  0  1   58   36    98 0.230  -1.27
 3.04 PlyA + 123909 123914    6                               1.05

 4.04 PlyA - 125457 125452    6                               1.05
 4.03 Term - 144865 144683  183  1  0   54   34   102 0.022  -1.06
 4.02 Intr - 176931 176716  216  0  0   44   28   250 0.170  13.30
 4.01 Init - 183154 183065   90  1  0   61   43    85 0.277   1.79
 4.00 Prom - 187171 187132   40                              -1.06


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  90126  90069   58  0  1   37  105    83 0.815   5.18
S.002 Sngl -  98601  98233  369  0  0   58   43   190 0.907   7.61
S.003 Term - 100041  99931  111  0  0   85   42   116 0.822   5.26
S.004 Init + 149987 150119  133  1  1   78   47    91 0.807   4.30
S.005 Term - 161601 161522   80  1  2  112   54    36 0.845   0.53
S.006 Init - 161743 161689   55  1  1   70   56    74 0.922   3.85


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:54544716_54748303|GENSCAN_predicted_peptide_1|564_aa
XPWLSMELSPRSPPEMLEESDCPSPLELKSAPSKKMWIKLRSLLRYMVKQLENGEINIEE
LKKNLEYTASLLEAVYIDETRQILDTEDELQELRSDAVPSEVRDWLASTFTQQARAKGRR
AEEKPKFRSIVHAVQAGIFVERMFRRTYTSVGPTYSTAVLNCLKNLDLWCFDVFSLNQAA
DDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTV
HCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENH
HISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLER
IDKPKALSLLLHAADISHPTKQWLVHSRWTKALMEEFFRQVNSAEISHNNPPPPPLATCT
PDLGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDS
KSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAASGITNQMSIDE
LSPCEEEAPPSPAEDEHNQNGNLD

>gi568815586r:54544716_54748303|GENSCAN_predicted_CDS_1|1695_bp
nnaccgtggctgagcatggagctgtccccccgcagtcctccggagatgctggaggagtcg
gattgcccgtcacccctggagctgaagtcagcccccagcaagaagatgtggattaagctt
cggtctctgctgcgctacatggtgaagcagttggagaatggggagataaacattgaggag
ctgaagaaaaatctggagtacacagcttctctgctggaagccgtctacatagatgagaca
cggcaaatcttggacacggaggacgagctgcaggagctgcggtcagatgccgtgccttcg
gaggtgcgggactggctggcctccaccttcacccagcaggcccgggccaaaggccgccga
gcagaggagaagcccaagttccgaagcattgtgcacgctgtgcaggctgggatcttcgtg
gaacggatgttccggagaacatacacctctgtgggccccacttactctactgcggttctc
aactgtctcaagaacctggatctctggtgctttgatgtcttttccttgaaccaggcagca
gatgaccatgccctgaggaccattgtttttgagttgctgactcggcataacctcatcagc
cgcttcaagattcccactgtgtttttgatgagtttcctggatgccttggagacaggctat
gggaagtacaagaatccttaccacaaccagatccacgcagccgatgttacccagacagtc
cattgcttcttgctccgcacagggatggtgcactgcctgtcggagattgagctcctggcc
atcatctttgctgcagctatccatgattatgagcacacgggcactaccaacagcttccac
atccagaccaagtcagaatgtgccatcgtgtacaatgatcgttcagtgctggagaatcac
cacatcagctctgttttccgattgatgcaggatgatgagatgaacattttcatcaacctc
accaaggatgagtttgtagaactccgagccctggtcattgagatggtgttggccacagac
atgtcctgccatttccagcaagtgaagaccatgaagacagccttgcaacagctggagagg
attgacaagcccaaggccctgtctctactgctccatgctgctgacatcagccacccaacc
aagcagtggttggtccacagccgttggaccaaggccctcatggaggaattcttccgtcag
gtcaacagtgcagaaatttcacacaacaaccccccacccccaccacttgccacctgtacc
ccagatctgggtgacaaggaggcagagttgggcctgcccttttctccactctgtgaccgc
acttccactctagtggcacagtctcagatagggttcatcgacttcattgtggagcccaca
ttctctgtgctgactgacgtggcagagaagagtgttcagcccctggcggatgaggactcc
aagtctaaaaaccagcccagctttcagtggcgccagccctctctggatgtggaagtggga
gaccccaaccctgatgtggtcagctttcgttccacctgggtcaagcgcattcaggagaat
aagcagaaatggaaggaacgggcagcaagtggcatcaccaaccagatgtccattgacgag
ctgtccccctgtgaagaagaggcccccccatcccctgccgaagatgaacacaaccagaat
gggaatctggattag

>gi568815586r:54544716_54748303|GENSCAN_predicted_peptide_2|503_aa
MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKAVAGALVYAAKPNEEISGPAEPAS
PPETTTTAQETSAAAVQGTAKVTSSRQELNPLSKSLSLCQINNLEKSLAAGPHHTSTHRD
KPESIVEKSILLTEQALAKAGKGMHGGVPGGKQFIEKPEGEIHSETQPADAWVEGGRKKP
STQVQGAERDVMEGQRSAAVPQEITIKPAATINRDLLCTSAGPPAAAPAMEQDNSPRKIQ
FTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQR
KKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTSG
TAKKTAECIPKTHERGSKEPSTKEPSTHIPPLDSKGANSVGCFFHDHAPLEQMGEPVLMD
GADDIKHFGLNEDLGKEGETSVP

>gi568815586r:54544716_54748303|GENSCAN_predicted_CDS_2|1512_bp
atgaggttcatgactctcctcttcctgacagctctggcaggagccctggtctgtgcctat
gatccagaggccgcctctgccccaggatcggggaacccttgccatgaagcatcagcagct
caaaaggaaaatgcaggtgaagacccagggttagccagacaggcaccaaagccaaggaag
cagagatccagccttctggaaaaaggcctagacggagcaaaaaaagctgtggggggactc
ggaaaactaggaaaagatgcagtcgaagatctagaaagcgtgggtaaagctgtagcaggg
gccctggtctatgctgctaagcctaatgaagagatctcaggtccagcagaaccagcttca
cccccagagacaaccacaacagcccaggagacttcggcggcagcagttcaggggacagcc
aaggtcacctcaagcaggcaggaactaaaccccctgagtaagtctctgtctctatgccag
atcaacaacctagaaaagtctctggctgcaggcccacatcacacctccacgcacagagat
aagcctgaatccatagtggagaaaagtatcttactaacagaacaagcccttgcaaaagca
ggaaaaggaatgcacggaggcgtgccaggtggaaaacaattcatcgaaaagccagaaggt
gaaattcactcggagactcagcctgcagatgcctgggtagaaggtggaagaaaaaaacct
tctacacaggttcaaggtgcagagagagatgtcatggagggccagcgctcagccgcagtg
cctcaggaaataacaataaaaccagcagctacaattaaccgtgaccttctatgcaccagc
gcgggcccaccggccgccgccccagccatggagcaagacaacagcccccgaaagatccag
ttcacggtcccgctgctggagccgcaccttgaccccgaggcggcggagcagattcggagg
cgccgccccacccctgccaccctcgtgctgaccagtgaccagtcatccccagagatagat
gaagaccggatccccaacccacatctcaagtccactttggcaatgtctccacggcaacgg
aagaagatgacaaggatcacacccacaatgaaagagctccagatgatggttgaacatcac
ctggggcaacagcagcaaggagaggaacctgagggggccgctgagagcacaggaacccag
gagtcccgcccacctgggatcccagacacagaagtggagtcaaggctgggcacctctggg
acagcaaaaaaaactgcagaatgcatccctaaaactcacgagagaggcagtaaggaaccc
agcacaaaagaaccctcaacccatataccaccactggattccaagggagccaactcggtg
ggttgtttcttccacgaccacgctcccttggagcagatgggggagccagtcctgatggat
ggtgctgatgacatcaaacactttggactcaatgaagacctggggaaagagggagaaact
tcagtgccctga

>gi568815586r:54544716_54748303|GENSCAN_predicted_peptide_3|76_aa
MDVGSMPPLPPVEVVLVLSIVVRPEAKSDWLKDVPWSEQMEEGVEQDLRVEKSNNNKELD
QSSKDSEGKKEQEKNK

>gi568815586r:54544716_54748303|GENSCAN_predicted_CDS_3|231_bp
atggacgtgggcagcatgccacctcttcctcctgtagaggtggttctggtgctcagcatt
gtggtgaggcctgaggcgaagagtgactggttgaaggatgtgccctggagtgagcaaatg
gaggaaggagtcgagcaggacctgagagtagaaaagagcaacaacaacaaagaacttgat
caatccagcaaagattcagaaggaaagaaagaacaagaaaagaataaataa

>gi568815586r:54544716_54748303|GENSCAN_predicted_peptide_4|162_aa
MREGLEVPRDLSTACDQDADSDMDNEVQAESTEQGSVSFRKDYKMKEKEEEEEEKKKRKK
RRRKGGVGEGEGGEGEKKKEEAAEEEEEKKKAATEEEEGRRSKNRYQVSSTLYYSSLLAV
IDSVGRGRGRKKGRLSCQHAIIHTITMSGKLCGVPDTSSTFC

>gi568815586r:54544716_54748303|GENSCAN_predicted_CDS_4|489_bp
atgagggaaggtttggaagttcctagagacttgtcaactgcttgtgaccaagatgctgat
agtgatatggacaatgaagtccaggctgagagcacagaacagggctctgtcagtttcaga
aaggattataagatgaaggagaaggaggaggaggaggaggagaagaagaagaggaagaag
aggaggaggaaaggaggagtgggagaaggagagggaggggaaggagagaagaagaaggag
gaggcggcggaggaggaggaagagaagaagaaggcagcgactgaggaggaggaggggagg
aggagtaaaaaccgctaccaggtcagcagcaccctgtactactccagtcttttggctgtt
atagactcagtgggcagaggaagaggtagaaagaaggggagactatcctgtcagcatgcc
atcatccacactatcaccatgtcaggaaaattgtgtggtgttcctgatacatcttccaca
ttctgttaa