GENSCAN 1.0	Date run:  8-Nov-116	Time: 15:22:00

Sequence gi568815589r:94503384_94739310 : 235927 bp : 44.54% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -   3065   3060    6                               1.05
 1.03 Term -  11844  11795   50  1  2  132   43     6 0.070  -2.03
 1.02 Intr -  38953  38828  126  2  0   24  109    87 0.398   5.05
 1.01 Init -  39815  39776   40  2  1   68   91    53 0.410   3.95
 1.00 Prom -  41407  41368   40                              -4.86

 2.00 Prom +  48198  48237   40                              -2.56
 2.01 Init +  49306  49359   54  0  0   60   96    43 0.730   3.58
 2.02 Intr +  49729  49910  182  0  2   37   62   101 0.467   1.07
 2.03 Term +  50798  50978  181  2  1   50   36   133 0.346   1.38
 2.04 PlyA +  51994  51999    6                              -0.45

 3.08 PlyA -  53459  53454    6                               1.05
 3.07 Term -  55749  55555  195  0  0  117   44   190 0.996  14.91
 3.06 Intr -  60078  59959  120  0  0  112   86   147 0.961  17.59
 3.05 Intr -  64024  63869  156  1  0   70   94   232 0.626  22.21
 3.04 Intr -  68219  68079  141  2  0  103   94   224 0.997  25.05
 3.03 Intr -  81286  81194   93  1  0   67  113   125 0.997  13.06
 3.02 Intr -  84086  83924  163  1  1  120   73   209 0.984  22.58
 3.01 Init -  90343  90174  170  1  2  100   76   283 0.318  27.31
 3.00 Prom -  96895  96856   40                              -8.06

 4.11 PlyA -  99776  99771    6                               1.05
 4.10 Term - 100189  99998  192  1  0   61   53   336 0.933  24.82
 4.09 Intr - 102193 102074  120  1  0   93  116   142 0.999  18.19
 4.08 Intr - 103569 103432  138  0  0   76  100   264 0.376  27.06
 4.07 Intr - 106678 106538  141  1  0   67   97   264 0.997  25.75
 4.06 Intr - 114477 114385   93  0  0   81   93    67 0.989   6.66
 4.05 Intr - 117108 116946  163  2  1   98   59   255 0.998  23.58
 4.04 Intr - 118857 118825   33  2  0  106   84    49 0.906   3.64
 4.03 Intr - 136031 135758  274  0  1   69   76   412 0.345  34.70
 4.02 Intr - 138206 138012  195  0  0   83   18   127 0.365   4.59
 4.01 Init - 142516 142378  139  1  1   47   27   142 0.347   4.30
 4.00 Prom - 143227 143188   40                              -6.76

 5.00 Prom + 143363 143402   40                              -4.86
 5.01 Init + 150734 150927  194  1  2   60   53   144 0.693   6.54
 5.02 Intr + 153624 153769  146  0  2   35   90    59 0.475   0.73
 5.03 Intr + 154169 154287  119  0  2   68   76    55 0.627   2.48
 5.04 Term + 160735 160848  114  0  0   57   51    91 0.647   0.87
 5.05 PlyA + 162603 162608    6                               1.05

 6.03 PlyA - 163060 163055    6                               1.05
 6.02 Term - 165740 165634  107  0  2  122   40    97 0.936   6.87
 6.01 Init - 175072 175000   73  1  1   45   72    56 0.662   0.93
 6.00 Prom - 176181 176142   40                              -5.06

 7.05 PlyA - 176358 176353    6                               1.05
 7.04 Term - 178123 177981  143  2  2   43   43   195 0.959   8.59
 7.03 Intr - 189123 188997  127  0  1  111   63    16 0.064   1.65
 7.02 Intr - 210856 210671  186  1  0   53   57   115 0.042   4.79
 7.01 Intr - 233461 233355  107  2  2   55  115    33 0.227   2.63

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  87125  87287  163  1  1   60   44   182 0.851   8.90
S.002 Term +  87675  88165  491  1  2   56   55   245 0.915  12.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_1|71_aa
MGSVCEALRQYSPASVMVYGTSEVIGQRQSLAAKPRRSQSESLGPEFQGLWEWLPGMALP
PKRQRYGNQKL

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_1|216_bp
atggggtctgtctgtgaagccttgcggcagtacagcccagcgtccgtgatggtctacggg
acttccgaggtgattgggcagcgtcagtctttagccgctaagccaagaaggagtcagtca
gagagccttgggccagagttccaggggctctgggagtggctgccagggatggctctgcct
cctaaacgacagagatatggtaaccaaaaactctga

>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_2|138_aa
MKRNKKKKIQTGRKEKEQRRCQYNRCCPQCTSPPYKAPITWPPRVPSYHSGQAAVSVAAT
NLMRQAAEPRHLQAPAYHSAAPDSAPPVTGSAAPDHALKPPPTASIVAPDNSTQPAPATD
SAAEDNAPKPSTATGSTR

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_2|417_bp
atgaagaggaacaagaagaagaaaatacagactggaagaaaggaaaaagaacagcgccga
tgccagtacaaccgctgttgccctcaatgcaccagcccaccctacaaggctcctatcact
tggcccccacgggtgccctcctaccactctggtcaagctgcagtctctgttgctgccacc
aacctcatgaggcaagctgcagagccacgccatctacaggctccagcataccacagtgca
gctcctgatagcgcacccccagtcacaggcagtgcagcaccggaccacgcccttaaacca
ccccccactgccagcattgtagccccagataactccacccaacccgcccctgccacggac
agtgcagcagaagacaacgcccctaagccatccaccgccactggcagtacacgttag

>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_3|345_aa
MTDRSPFETDMLTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGI
AGSVNVTGDEVKKLDVLSNSLVINMVQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDP
LDGSSNIDCLASIGTIFAIYRKTSEDEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQ
GVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEVSEES
QDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGG
LATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYLTCVQKNQAGS

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_3|1038_bp
atgacggacagaagccccttcgaaaccgacatgctcaccctgacccgctacgttatggaa
aaggggcgtcaggccaaagggactggggagctcacccagctgctgaactcaatgctgacg
gccatcaaagccatctcctcggctgtgcgcaaggccggtctggcccacctgtatggaatc
gcaggaagcgttaacgtgacgggagatgaggtgaagaaactggatgtgctatccaattcc
ctggtgatcaacatggtccaatcctcctatagtacctgcgtcctggtctcagaagagaat
aaggacgccatcatcaccgccaaggagaagcgggggaaatacgtggtctgctttgaccca
ctggatggatcttccaatattgactgcctggcctccatcggaaccatctttgccatctat
agaaagacctcagaggatgagccttctgaaaaggatgccctgcagtgtggccgcaatatt
gtggccgcaggttatgcgctgtacggtagtgcaaccctggtggctctctccacagggcaa
ggcgtggacctcttcatgcttgacccggctcttggtgaatttgtcctggtggaaaaagat
gtcaagattaagaagaaaggaaagatttacagcctgaatgagggctatgccaagtatttt
gatgcggccaccactgaatatgtgcagaaaaagaaattccctgaggtgagtgaagaaagc
caggatggcagtgctccctatggggccaggtatgtgggctccatggtggctgacgtgcac
cgcaccctggtctatggaggaatcttcctgtacccagccaaccagaagagccctaagggc
aagctccggctcctgtatgaatgcaatcccgtggcctacatcattgagcaggcaggaggc
ttggcgaccacggggacccagcctgtactggacgtgaagcccgaggcaattcaccagcga
gtccccctcattctggggtcaccagaggatgtgcaggaatatctcacctgtgtgcagaaa
aatcaggcaggcagctag

>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_4|495_aa
MGGIVEIEHGVIRSLKGPPGPEQEGKNFKILPPEEQLEELKIFNWRRFFLKSCLRNKELN
KTLKGSTLFARHLSPLWGFEETVAVFPGGTTTFLHSTPPHLTTLGTGICTPAPHLRPVPT
ALSCRPHLQPRTCRLHLQPRALPGSSMADQAPFDTDVNTLTRFVMEEGRKARGTGELTQL
LNSLCTAVKAISSAVRKAGIAHLATPGYDNLPLLYGIAGSTNVTGDQVKKLDVLSNDLVM
NMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKK
STDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKI
KKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIF
LYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPD
DVLEFLKVYEKHSAQ

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_4|1488_bp
atgggtggaatcgtggaaatagagcatggggttataaggagcctcaaggggccaccaggt
ccagaacaggaagggaagaacttcaaaatcttgccacctgaggagcagctggaggagctg
aaaatatttaactggagaaggtttttcctgaaaagttgcctgaggaacaaagagttaaat
aagacccttaaaggatcaactctctttgccaggcatctaagtcccctctggggctttgag
gagacagtcgctgtctttcctggtggtaccaccaccttccttcattcaacgccgccgcat
ctgacaaccctgggcacaggaatctgcaccccagctccgcacctgcggccagtgcctact
gccctctcttgccgcccgcacctgcagccccgcacctgccgcttgcacctgcagccccgc
gctctacccggttcaagcatggctgaccaggcgcccttcgacacggacgtcaacaccctg
acccgcttcgtcatggaggagggcaggaaggcccgcggcacgggcgagttgacccagctg
ctcaactcgctctgcacagcagtcaaagccatctcttcggcggtgcgcaaggcgggcatc
gcgcacctggcaaccccaggctatgacaacctgccgcttctctatggcattgctggttct
accaacgtgacaggtgatcaagttaagaagctggacgtcctctccaacgacctggttatg
aacatgttaaagtcatcctttgccacgtgtgttctcgtgtcagaagaagataaacacgcc
atcatagtggaaccggagaaaaggggtaaatatgtggtctgttttgatccccttgatgga
tcttccaacatcgattgccttgtgtccgttggaaccatttttggcatctatagaaagaaa
tcaactgatgagccttctgagaaggatgctctgcaaccaggccggaacctggtggcagcc
ggctacgcactgtatggcagtgccaccatgctggtccttgccatggactgtggggtcaac
tgcttcatgctggacccggccatcggggagttcattttggtggacaaggatgtgaagata
aaaaagaaaggtaaaatctacagccttaacgagggctacgccagggactttgaccctgcc
gtcactgagtacatccagaggaagaagttccccccagataattcagctccttatggggcc
cggtatgtgggctccatggtggctgatgttcatcgcactctggtctacggagggatattt
ctgtaccccgctaacaagaagagccccaatggaaagctgagactgctgtacgaatgcaac
cccatggcctacgtcatggagaaggctgggggaatggccaccactgggaaggaggccgtg
ttagacgtcattcccacagacattcaccagagggcgccggtgatcttgggatcccccgac
gacgtgctcgagttcctgaaggtgtatgagaagcactctgcccagtga

>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_5|190_aa
MENGPGGANNQHKSQSTVLRAGAPLQGPSRAISIVLQEDCCPCTAFLEQKSEKSEFFSMR
VLTSGFSKHAESQANPQRSHANLVWGPSTPGCLVECLIDVRQGAPHESPNSSEAAVGESQ
EVRNPKKIFLFQNSFIKVQLTDKKLHTLKIHTLSSVAIVVWKQPSTEHKRIRTAWQSQSV
DFIVEPYGPQ

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_5|573_bp
atggaaaatggacctggaggtgcaaacaaccagcacaagtcccagagcacagtcctcaga
gctggagcccctctccaaggcccatcaagagccatctccatagtcctccaagaggactgc
tgtccatgtaccgccttcttggaacagaaatcagagaagtcagagttcttctccatgcga
gtactgacgagtggattctccaaacacgcagaaagccaagctaatcctcagcgctcccat
gccaatctggtgtggggaccctccactccaggctgccttgtagaatgccttattgatgtg
cggcaaggggcaccccatgaaagtcccaacagctctgaagctgctgtgggagagtcacag
gaagtgaggaatcctaagaagatcttcctttttcaaaacagcttcatcaaggtgcaatta
acagacaagaaactgcacacactgaaaatacacactttgtctagtgttgccattgtggtg
tggaagcagccatcgacagaacataaaagaatacggacggcatggcagtcacagtcagtt
gacttcattgtagagccttatgggccacaatga

>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_6|59_aa
MHHGQKQWPVVLTFPPGVSQCVIPVALIWGDFASLGMFGNNIWRHFGSHNWRAVDATGT

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_6|180_bp
atgcaccacgggcagaagcaatggcctgttgtcctcacgtttcctcctggtgtttctcaa
tgcgtcattccagtggctctcatctggggtgactttgcctccctggggatgtttggcaat
aatatctggagacattttggttctcacaactggagggccgtggatgctactggcacctag

>gi568815589r:94503384_94739310|GENSCAN_predicted_peptide_7|187_aa
XWWAQILSTTVEIRYEESRCKKDLNSMKCFAHCGPKNFWVTGGISYGDMRMLADGEDSDK
SRQLDSITASFPLPHPWKNLKSADYQMGPQVKCLHTPWDQGSELPLPSEQKVSHQLYLRP
MPWGVEPPLSVESPPEPSALADDGVDDGDGDGDEKEEEDGGGGDEKQDSGVYSGSHSFES
TSHKEYS

>gi568815589r:94503384_94739310|GENSCAN_predicted_CDS_7|564_bp
nagtggtgggcccagattttgagtaccacagttgaaataaggtatgaggagagcagatgc
aaaaaggaccttaattccatgaagtgctttgcgcactgtgggcccaagaatttctgggta
actggtggcatctcctacggcgatatgagaatgctggctgatggagaggacagcgataaa
tctcggcagcttgacagtatcactgcctccttccctctcccacatccctggaaaaattta
aagtctgcagattaccagatgggaccccaagttaaatgcctgcatactccctgggaccaa
ggatccgaactccctttgccctcagaacagaaggttagccaccaactctacctccgccct
atgccctggggagtggagcctccattgtcggtggaatctcccccagagccttctgctcta
gctgatgatggtgttgatgatggtgatggtgatggtgatgagaaggaggaggaggatggt
ggcggtggtgatgaaaaacaggattctggagtttacagtggttctcactcttttgaaagc
acatcccataaagagtacagctga