GENSCAN 1.0	Date run: 24-Oct-119	Time: 21:53:15

Sequence gi568815595r:55370095_55580920 : 210826 bp : 43.63% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1222   1227    6  0  0   95   92     5 0.348   2.26
 1.02 Intr +  19476  19638  163  2  1   73   71    52 0.033   1.55
 1.03 Intr +  19721  19997  277  0  1   62   56   218 0.022  12.58
 1.04 Term +  20007  20670  664  0  1  -55   43   250 0.302  -0.46
 1.05 PlyA +  20898  20903    6                               1.05

 2.00 Prom +  21067  21106   40                              -4.96
 2.01 Sngl +  22312  23421 1110  0  0   43   54   365 0.766  25.45
 2.02 PlyA +  23503  23508    6                               1.05

 3.00 Prom +  57373  57412   40                              -1.76
 3.01 Init +  58356  58416   61  2  1   60   81    61 0.721   4.01
 3.02 Intr +  62106  62188   83  1  2   81   94    48 0.278   4.06
 3.03 Term +  69777  69887  111  2  0   82   53    58 0.147   0.26
 3.04 PlyA +  72291  72296    6                               1.05

 4.00 Prom +  89209  89248   40                              -3.66
 4.01 Init +  91171  91224   54  0  0   83   64    87 0.910   7.08
 4.02 Term +  95019  95084   66  2  0   68   40    58 0.616  -3.06
 4.03 PlyA +  95122  95127    6                               1.05

 5.13 PlyA -  96566  96561    6                               1.05
 5.12 Term - 100456  99998  459  1  0   93   40   988 0.998  89.59
 5.11 Intr - 104535 104243  293  1  2  119   96   653 0.998  66.05
 5.10 Intr - 105989 105963   27  0  0  104  106     0 0.735   1.49
 5.09 Intr - 109470 109220  251  2  2  119   63   155 0.962  13.18
 5.08 Intr - 110824 110691  134  1  2  107  103    -1 0.689   2.74
 5.07 Intr - 115037 114923  115  1  1   69   10   101 0.568   0.85
 5.06 Intr - 115569 115455  115  1  1   76   29   103 0.010   2.71
 5.05 Intr - 116974 116886   89  0  2  103  100    -8 0.011   1.51
 5.04 Intr - 117659 117595   65  2  2   77   49    27 0.010  -4.78
 5.03 Intr - 118132 117840  293  2  2   38   28   248 0.011  10.65
 5.02 Intr - 119047 118838  210  2  0  -20   83   167 0.049   4.28
 5.01 Init - 123580 123571   10  1  1   71  110     2 0.048   1.46
 5.00 Prom - 135046 135007   40                              -5.26

 6.00 Prom + 136890 136929   40                              -2.56
 6.01 Init + 137288 137290    3  1  0   75   95     0 0.543  -0.60
 6.02 Intr + 137518 137598   81  0  0  116   86    10 0.707   3.43
 6.03 Intr + 142530 142688  159  2  0  112   82    -3 0.736   1.68
 6.04 Term + 143022 143168  147  2  0   99   45   110 0.967   5.70
 6.05 PlyA + 144349 144354    6                               1.05

 7.00 Prom + 145938 145977   40                              -5.26
 7.01 Init + 151290 151425  136  2  1   95  109    18 0.069   4.69
 7.02 Intr + 163701 163828  128  1  2  106   64    26 0.144   2.40
 7.03 Term + 166994 167188  195  1  0   19   43   142 0.163   0.21
 7.04 PlyA + 168581 168586    6                               1.05

 8.00 Prom + 168637 168676   40                              -3.76
 8.01 Sngl + 173639 174034  396  1  0   96   37   212 0.907  11.16
 8.02 PlyA + 174577 174582    6                              -3.44

 9.05 PlyA - 175044 175039    6                               1.05
 9.04 Term - 176419 176333   87  1  0   57   49    91 0.167  -0.24
 9.03 Intr - 177214 177065  150  1  0   61   55    92 0.164   3.56
 9.02 Intr - 186572 186312  261  2  0   80   72   109 0.318   6.18
 9.01 Intr - 203847 203767   81  0  0   74   97   114 0.971  10.73

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 115237 115155   83  1  2   63   75   140 0.974   8.64
S.002 Intr + 117896 118031  136  0  1  135   13    89 0.909   5.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_1|369_aa
MAPPLLISRQTGSGVDLQQTPTDLQLRVLTVRRKTNKQKGHPHQNHICMSPSTKTKEEHS
SSPATEQSWMENDFDELREEGFRRSNYSELKEEVRTHGKEVKNLEKKLDEWLTRITNAEK
SLKDLMELKTTAREICDECTSLSSRCDQLVSVMEDQMNEMKREEKFREKRIQRNKQSHQE
IWDYVKRPNLRLIGVPESDKENGTKLENTLQDIIQENFPNLARQANIHIQEIQRTPQRYS
SRRATPRHIIVTFTKVEMKEKILRAARDKGRVTHKGKPIRLTADLLAETLQERREWGPIF
NILKEKNFQPEFHIPKLSFRSEGEIKYFTDKQMLRDSVITRPALKGLVKEALNMERNNRY
QPLQKHAKV

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_1|1110_bp
atggcacctccgctgctgatatccaggcaaacagggtctggagtggacctccagcaaact
ccaacagacctgcagctgagggtcctgactgttagaaggaaaactaacaaacagaaagga
catccacaccaaaaccacatctgtatgtcaccatcaacaaagaccaaagaggaacacagc
tcctcaccagcaacggaacaaagctggatggagaatgactttgatgagttgagagaagaa
ggcttcagacgatcaaactactctgagctaaaggaggaagttcgaacccatggtaaagaa
gttaaaaaccttgaaaaaaaattagatgaatggctaactagaataaccaatgcagagaag
tccttaaaggacctgatggagctgaaaaccacagcaagagaaatatgtgacgaatgcaca
agtctcagtagccgatgtgatcaactggtttcagtgatggaagatcaaatgaatgaaatg
aaacgagaagagaagtttagagaaaaaagaatacaaagaaacaaacaaagccaccaagaa
atatgggactatgtgaaaagaccaaatctacgtctaatcggtgtacctgaaagtgacaag
gagaatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaat
ctagcaaggcaggccaacattcacattcaggaaatacagagaacgccacaaagatactcc
tcgagaagagcaactccaagacacataattgtcacattcaccaaagttgaaatgaaggaa
aaaatattaagggcagccagagacaaaggtcgggttacccacaaagggaagcccatcaga
ctaacagctgatctcttggcagaaactctacaagagagaagagagtgggggccaatattc
aacattcttaaagaaaagaattttcaaccagaatttcatatccccaaactaagcttcaga
agtgaaggagaaataaaatactttacagacaagcaaatgttgagagattctgtcatcacc
aggcctgccctaaaagggctcgtgaaggaagcactaaacatggaaaggaacaaccggtac
cagccactgcaaaaacatgccaaagtgtaa

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_2|369_aa
MNIDAKILNKILANRIQQHIKKLIHHNQVGFIPGMQGWFNICKSINIIQHINRNNGKNHM
ITSIDAEKAFDKIQQRFMLKTLNKLGIDRTYLKIIRAIYDKPTANIILNGQKLEAFPLKT
GTRHGCPLSPLLFNIVLEVLARAIRQEKEIKGIQSGKEEVKLSLFADDMIVYLENPIVSA
QNLLKLIGNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFIIASKRIKYLGIQLTR
DVKDLFKENYKPLLKEIKEDTNKRKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT
FFRELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWHQNRH
IDQWNRTEP

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_2|1110_bp
atgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc
aaaaagcttatccaccataatcaagtgggcttcatccctgggatgcaaggctggttcaac
atatgcaaatcaataaacataatccagcatataaacagaaacaacggcaaaaaccacatg
attacctcaatagatgcagaaaaggcctttgacaaaattcaacaacgcttcatgctaaaa
actctcaataaattaggtattgataggacgtatctcaaaataataagagctatctatgac
aaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacacggatgccctctctcaccactcctattcaacatagtgttggaagttctg
gccagggcaattaggcaggagaaggaaataaagggtattcaatcaggaaaagaagaagtc
aaactgtccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctcagcc
caaaatctccttaagctgataggcaacttcagcaaagtctcaggatacaaaatcaatgtg
caaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagt
gaactcccattcataattgcttcaaagagaataaaatacctaggaatccaacttacaagg
gatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggat
acaaacaaacggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatg
gccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgact
ttcttcagagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccac
attgccaaatcaatcctaagccaaaagaacaaagctggaggcatcactctacctgacttc
aaactatactacaaggctacagtaaccaaaacagcatggtactggcaccaaaacagacat
atagaccaatggaacagaacagagccctga

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_3|84_aa
MFTAPSFFYGPSPPKGISNAEHQEDMMYTHLKSIRECMFGPEDSRSLEAMGLPWLAAADA
LRKPLLFQQKECLMTCIGPSDKHL

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_3|255_bp
atgtttactgcccccagcttcttctacgggccttcacctcccaaaggaatctccaatgct
gagcatcaagaagacatgatgtatacccacctgaaatccataagggagtgcatgtttggg
cctgaagacagcaggtcactagaggccatggggcttccatggctggcagcagcagatgct
ctaaggaagcccctcctcttccaacaaaaggagtgcctgatgacatgcatcgggccatct
gacaaacatttgtga

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_4|39_aa
MAEGKGEAGTFFTGQQDGGTFGMFVDVFDCHKWKDVIGI

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_4|120_bp
atggcagaaggcaaaggagaagcaggcaccttcttcacagggcagcaggatggaggcaca
tttggcatgtttgtagatgtttttgattgtcacaaatggaaggatgttattggcatctag

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_5|686_aa
MATVPKTTGIWKRLEIPVPGTRFCQTSQSPHLRAPAKISVAGPRIAPHALGRSQMSNHAS
HYPSPYYSGDFAGEPGSVRQLPSEPFRRRRCARDRPPPAGPLSRPSDPGAKRGGGQLRRP
WTAGAESPPRSSELSPFPSLAPAVHSLLFALRPGKTGKREINPKRERTGYVRHLPEKKPC
APDCSVAPKLQRGLNPVAPLGFLGCARSGGDFLPAPPPPRHEATFAHSLPNQPDLVSRQT
LPGEFRGGNAESAQRTAGRQMGPRRPPEDQFRCAAGRCNTEGATGPAQQMGLGQLDTGLK
SIGILSPGVALGMAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSLGMNNPVQMSEVYII
GAQPLCSQLAGLSQGQKKLCHLYQDHMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSV
FGRVMQIEKRLLASSQSSRETAFTYAVSAAGVVNAMSRACREGELSTCGCSRAARPKDLP
RDWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLA
DVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRLNSRGKLVQVNSRFNSP
TTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTER
CHCKFHWCCYVKCKKCTEIVDQFVCK

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_5|2061_bp
atggccacagtccccaaaaccacgggcatctggaagcgtctagaaattccggtgcccgga
acccggttttgccaaacttcgcaatctcctcacctgagggcacccgccaagatctccgtg
gcaggaccacgcatcgcgcctcatgctctgggccggagccagatgagcaatcatgcatcc
cactacccaagtccctactactctggggactttgcaggagagccggggtccgtgcggcag
ctgcccagcgagcccttccgccgccgccgttgtgcccgggaccgcccgcctcccgccggc
ccgctctcccgcccctcggacccgggcgccaaacgaggaggtgggcagcttcgccggcca
tggaccgccggagctgagtcgccgccgcggagctccgagctctcgcccttccccagcctc
gcgcccgcggtgcactcgctgctcttcgcccttcgccctggaaaaacggggaaaagagag
atcaacccgaagagagaaagaacgggatacgtgcggcatctcccggagaaaaagccatgc
gcgcctgattgttctgtggccccaaagctgcagcgggggcttaacccggtcgctccgctc
ggattcctcggctgcgctcgctcgggtggcgacttcctccccgcgccccctccccctcgc
catgaagccaccttcgcacattcactgccgaaccagccagatttagtttctagacagact
ctgccaggggagtttcgagggggcaatgcggagagtgcgcagcgaaccgcgggccgacaa
atgggccctcggaggcccccagaggaccagtttcgctgcgccgccggccgctgcaatacg
gaaggggccacgggtccagcccagcaaatgggactcggccagctggacacagggttgaag
tccattggaatattaagcccaggagttgctttggggatggctggaagtgcaatgtcttcc
aagttcttcctagtggctttggccatatttttctccttcgcccaggttgtaattgaagcc
aattcttggtggtcgctaggtatgaataaccctgttcagatgtcagaagtatatattata
ggagcacagcctctctgcagccaactggcaggactttctcaaggacagaagaaactgtgc
cacttgtatcaggaccacatgcagtacatcggagaaggcgcgaagacaggcatcaaagaa
tgccagtatcaattccgacatcgaaggtggaactgcagcactgtggataacacctctgtt
tttggcagggtgatgcagatagaaaaaagattgttagcaagctctcaaagcagccgcgag
acggccttcacatacgcggtgagcgcagcaggggtggtgaacgccatgagccgggcgtgc
cgcgagggcgagctgtccacctgcggctgcagccgcgccgcgcgccccaaggacctgccg
cgggactggctctggggcggctgcggcgacaacatcgactatggctaccgctttgccaag
gagttcgtggacgcccgcgagcgggagcgcatccacgccaagggctcctacgagagtgct
cgcatcctcatgaacctgcacaacaacgaggccggccgcaggacggtgtacaacctggct
gatgtggcctgcaagtgccatggggtgtccggctcatgtagcctgaagacatgctggctg
cagctggcagacttccgcaaggtgggtgatgccctgaaggagaagtacgacagcgcggcg
gccatgcggctcaacagccggggcaagttggtacaggtcaacagccgcttcaactcgccc
accacacaagacctggtctacatcgaccccagccctgactactgcgtgcgcaatgagagc
accggctcgctgggcacgcagggccgcctgtgcaacaagacgtcggagggcatggatggc
tgcgagctcatgtgctgcggccgtggctacgaccagttcaagaccgtgcagacggagcgc
tgccactgcaagttccactggtgctgctacgtcaagtgcaagaagtgcacggagatcgtg
gaccagtttgtgtgcaagtag

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_6|129_aa
MNRIHFPLLETAPPTPTSEAVNHMALKKMKNNYSECLMSLMFFQDKVAKNSHLFSCEKDF
QLGSRSQGRIQCPTIAANCFWHPTLRFQRSSQQQRHFNGDIQSIVHSRLQFTTPVYNPVY
NPVALRMQD

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_6|390_bp
atgaatagaatccattttcccttgttggaaactgctccccccacccccaccagtgaggct
gtcaaccacatggccttgaaaaagatgaaaaataattacagtgaatgtctgatgtccttg
atgtttttccaagataaagtagcaaagaacagtcatttattcagttgtgagaaagatttc
cagctgggcagcaggtcacaaggcagaatacaatgccccacaattgcagcaaactgcttt
tggcacccaactctgcgctttcaacgcagcagccaacaacagcgccatttcaatggtgac
atccagtccatagtgcattcccgtttacagtttacaactcctgtttacaaccctgtttat
aatcccgttgccctgagaatgcaggactga

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_7|152_aa
MEAFDLVSQAGLKACLWCKETTLEVKCYAAYFLGEEEREKDSTFPGQLCIFSLPDAEVPY
NISFEFKISYYFDDAETVKPSEGQVTQGSLLNTLASFASMLGGRMGSTDTGNSLQTSGAG
RPHFHKKSPLTAMLGATSNQCLQMTSLLKEQS

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_7|459_bp
atggaggcatttgaccttgtttctcaggcagggctgaaggcttgcctgtggtgcaaagaa
accaccttggaggtgaaatgctatgcagcatactttcttggagaagaagagagagagaaa
gactccacttttccaggacagctctgcattttctcccttccagatgctgaggttccttat
aacatttccttcgaattcaagatttcatattattttgatgatgcagagacagtgaagccc
agcgaggggcaggtcacccagggatctctgctgaacaccttggcgtcctttgccagcatg
ctgggaggccgcatgggctccaccgacaccggtaactcactgcagaccagcggggctggc
cggccacatttccacaagaagtctcccctcacagccatgctgggtgccacaagcaatcaa
tgtctgcaaatgacaagtttgctgaaagaacagtcttag

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_8|131_aa
MDLLVPAALSLCAICFSLRPSSLVPRNYSLHVMAALATLPLSLEALPLTTNQLHLPTILN
SDSQEQEPAWPISSVQGGRFTGVHPDDEVAAVGPSAQPSSNQPWLGQGSMGLSKAAQAGE
ATDGDESDVGL

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_8|396_bp
atggatctcctcgttcctgctgcgctgtctctgtgtgccatttgcttctctctacgtccc
tcttctctggttcctcggaactacagcttgcatgtcatggctgccctggccactctccca
ctctctctcgaagccttacctctcaccactaatcaactccacctccccacgatcctcaat
tcagattctcaagaacaagaacctgcctggcctatttcatccgttcagggaggccgattc
acaggagtccatccagatgatgaggtggctgctgttggtcccagtgctcagccctcatcc
aatcaaccatggctggggcagggcagcatgggactaagcaaggctgcccaggcaggagag
gctaccgatggggatgagagtgatgtgggcctttag

>gi568815595r:55370095_55580920|GENSCAN_predicted_peptide_9|192_aa
LFGDEEKRYIKCPHQIKAMFSIQKNLKALLVANGCQPSSFQIQIHKQRAGAFPAVVQQNS
QLLSLDLIESLQARECDAVIGQVESYALCLELMGVVGASGQKVEEVGTWSVFLERLNYPD
LADVEDERSQGCFLTPGDSVVVGPAGASRGQPWASAECQDSSSQNLDSNVEMDSEYDKQG
NEAACQKMMSVT

>gi568815595r:55370095_55580920|GENSCAN_predicted_CDS_9|579_bp
ctgtttggtgatgaggagaagcgctacatcaagtgccctcatcaaataaaagctatgttc
tcaattcagaaaaacttaaaggctctgttggtagcaaatggctgccagccatcatccttc
cagattcagatccacaagcaaagagcaggtgcctttcctgcagtagttcagcaaaattct
cagctcctctcactggatttgattgaatcactgcaggccagagaatgtgatgctgtgatt
ggccaagttgagtcatatgctctatgtctggagcttatgggggtggtgggagcttctgga
cagaaagtggaggaggtgggaacttggtctgtcttcctggaaaggctgaactatccagac
ctggccgatgtagaggatgaaaggagccaggggtgcttcctcaccccgggagattcagtg
gtggtgggcccggctggggcaagtcgaggacagccctgggcatcagcagagtgccaagac
agcagctcacagaacctggattctaatgtggagatggacagtgaatatgataaacaagga
aatgaggctgcatgtcagaaaatgatgtcagtcacttga