GENSCAN 1.0	Date run:  6-Nov-116	Time: 10:46:20

Sequence gi568815586f:19339700_19618717 : 279018 bp : 41.34% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3624   3735  112  2  1   32   67   169 0.770   8.23
 1.02 Intr +   6143   6189   47  0  2   78  107     3 0.922  -1.59
 1.03 Intr +   7295   7483  189  1  0   59   75    94 0.906   4.06
 1.04 Intr +   8700   8820  121  2  1   56   82   170 0.863  12.35
 1.05 Intr +  14185  14303  119  2  2   97   20    62 0.086  -0.44
 1.06 Intr +  18529  18738  210  0  0   35   76   103 0.125   1.99
 1.07 Intr +  19713  19847  135  2  0   14   59   171 0.533   6.64
 1.08 Intr +  21883  22007  125  0  2   52   90    61 0.935   1.16
 1.09 Intr +  26265  26410  146  0  2   30   96   184 0.997  12.41
 1.10 Term +  30871  30956   86  2  2   99   47    46 0.728  -1.56
 1.11 PlyA +  34031  34036    6                               1.05

 2.05 PlyA -  34237  34232    6                               1.05
 2.04 Term -  45676  45565  112  0  1   96   55    14 0.362  -4.05
 2.03 Intr -  49022  48847  176  2  2  -59   94   358 0.681  19.52
 2.02 Intr -  49442  49373   70  1  1   43  110    44 0.157   0.37
 2.01 Init -  57596  57589    8  2  2   89   91     0 0.096   0.95
 2.00 Prom -  70807  70768   40                              -5.05

 3.02 PlyA -  72569  72564    6                               1.05
 3.01 Sngl -  79462  79304  159  1  0   94   42   157 0.646   5.96
 3.00 Prom -  89763  89724   40                              -3.65

 4.00 Prom +  98936  98975   40                              -3.25
 4.01 Init + 100001 100671  671  1  2  122   82  1261 0.977 123.22
 4.02 Term + 100796 101006  211  2  1  100   41   185 0.699  10.78
 4.03 PlyA + 110322 110327    6                               1.05

 5.03 PlyA - 110700 110695    6                               1.05
 5.02 Term - 117182 116546  637  1  1   89   42   733 0.834  61.53
 5.01 Init - 117949 117786  164  1  2   86   32   153 0.945   8.75
 5.00 Prom - 118919 118880   40                              -4.05

 6.00 Prom + 119107 119146   40                              -5.65
 6.01 Init + 119868 119902   35  2  2   23   96    29 0.154  -3.41
 6.02 Intr + 122811 123018  208  0  1   94   -5   161 0.047   5.56
 6.03 Intr + 133549 133656  108  0  0  119  116    -9 0.077   4.56
 6.04 Intr + 154101 154287  187  2  1  110  102   151 0.996  17.04
 6.05 Intr + 160398 160522  125  1  2   64   93    29 0.834   0.38
 6.06 Intr + 172699 172766   68  0  2   94  103    47 0.838   3.58
 6.07 Intr + 174972 175085  114  0  0   69   91    67 0.757   3.74
 6.08 Intr + 178388 178414   27  2  0  100   83    31 0.073   0.11
 6.09 Intr + 204251 204378  128  2  2   84   78    74 0.590   5.40
 6.10 Intr + 209262 209324   63  1  0  118   95    58 0.626   7.27
 6.11 Intr + 213604 213693   90  2  0   65  115    27 0.446   2.15
 6.12 Term + 226735 227810 1076  2  2   61   40   347 0.060  18.48
 6.13 PlyA + 228115 228120    6                               1.05

 7.00 Prom + 228683 228722   40                             -10.15
 7.01 Init + 228743 229146  404  1  2   60   39   198 0.841   8.25
 7.02 Intr + 233544 233664  121  0  1   82   72   102 0.850   7.58
 7.03 Intr + 234103 234213  111  0  0   74   45    68 0.536   0.76
 7.04 Term + 234844 234882   39  0  0  102   48    44 0.672  -1.99
 7.05 PlyA + 235373 235378    6                               1.05

 8.06 PlyA - 236888 236883    6                               1.05
 8.05 Term - 252343 252123  221  2  2   73   44   130 0.333   3.32
 8.04 Intr - 254378 254157  222  0  0   82  -12   183 0.398   4.88
 8.03 Intr - 265452 265315  138  1  0   33   33   130 0.364   1.51
 8.02 Intr - 266355 266233  123  1  0   35   90    86 0.690   3.14
 8.01 Init - 271055 270749  307  2  1   73   71   154 0.554   9.70

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  91062  90861  202  0  1   60   59   141 0.878   7.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_1|429_aa
TESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGTTEIGMIGSKPFSTVKYKNEEEEVVPP
RPPLPRSYDFTEQPPIIPPLPSDSSSLLCYSRGPVHLPEEKKMYQVQGYPRNGSHCGPDY
RLYKSEPELTTVAEVDESNGEEKSEPVSEIETSVVKGSHFPVGVVPPRAKSPTPESSTIA
SYVTLRKTKKMMDLRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKKGL
NVIGASDQSPLQSPSNLRDNPFRTTQTRRRDDKELDTAIRENDVKPDHETPATEIVQLKE
TEPQNVDFSKELKKTENISYEMLFEPEPNGVNSVEMMDKERNKDKMPEDVTFSPQDETQT
ANHKPEEHPEENTKNSVDEQEETVISYESTPEVSRGNQTMAASTISSKFGALGLPPFSAE
QQQKHIETL

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_1|1290_bp
acggaatcagcaggaattcagcgtgcacagattcagaaagaactttggcgaattcaggat
gtcatggaagggctgagtaaacataagcagcaaagaggtactacagaaataggtatgata
ggatcaaagcctttctcaacagttaagtacaaaaatgaggaagaggaagtagtcccacct
cgtcctccacttcctcggtcctatgactttacagagcagcctcccataatcccccctctg
cccagtgatagcagctccttgctctgttatagcaggggcccagttcatctgcctgaagaa
aagaagatgtatcaagttcaaggatatccaagaaatggatctcactgtggtccagattat
agactctacaagagtgaaccagagttaacaacagtggcagaagttgatgaatctaatgga
gaagaaaaatcagaacctgtttcagagatagaaacttcagttgttaaaggttcccacttt
cctgttggagtagtccctccaagagcaaaatcaccaacacccgaatcttcgacaatagct
tcctatgtaaccttgaggaaaactaagaagatgatggatctaagaacggaaagaccaaga
agtgcagtggaacagctctgtttggctgaaagtactcgaccaaggatgactgtggaagag
caaatggaaagaataagaagacatcaacaagcgtgcctgagggagaagaaaaaagggtta
aatgttatcggtgcttcagaccagtcacccttacaaagcccttcaaatttaagggataat
ccatttaggactactcagactcgaaggagggatgataaggaactggacactgccattaga
gaaaatgatgtaaagccagaccatgaaactcctgcaacagaaattgttcaactaaaagaa
accgaaccccaaaatgtggacttcagcaaagagttaaaaaaaactgaaaacatttcatat
gaaatgctttttgaacctgagccaaatggagtaaattctgtggaaatgatggataaagaa
agaaacaaagacaaaatgcctgaggatgttacattcagccctcaagatgaaacacagacc
gcaaatcataaaccagaagagcatcctgaagaaaatacaaagaacagtgttgacgaacag
gaagaaactgttatttcttacgaatcaactcctgaggtttctagaggaaatcaaacaatg
gcagcatctaccatatctagtaagtttggtgctttaggattaccaccattttctgctgaa
cagcagcagaaacatatagagacattataa

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_2|121_aa
MPRNLHTFNHLEAHQNRVFYGGFMAQKKEEEEEKKEEEEEEEEEEEEEEEEEEEKKKKKE
EKRERSKKNKQQQQQNTKRNKNLTRSHIFQQCPVTGGQAVWTIWVVPKLLGSQDSHMLNN
Y

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_2|366_bp
atgcccaggaacctccatacattcaatcatctggaagctcatcagaaccgtgtcttttat
ggaggcttcatggcacagaagaaggaggaggaggaggagaagaaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaaaagaagaaaaaaaaagaa
gagaaaagagaaagaagtaaaaaaaataaacaacaacaacaacaaaacaccaaaagaaac
aagaacctaaccagatctcacatttttcagcagtgccctgtcacaggaggccaagctgta
tggactatatgggtggttcccaaacttttggggtctcaggattctcacatgcttaacaac
tattga

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_3|52_aa
MAGYGTLLQDLTNNITLKDLKQHKSTCKKDIPSEKSEEITTGDVWFSFLKSH

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_3|159_bp
atggctgggtatgggaccctcctccaggatctgaccaacaatatcacccttaaagatctg
aaacagcacaagtcaacctgtaagaaggacatccccagtgaaaagagtgaggagatcact
actggcgatgtctggtttagcttcctgaagagccactag

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_4|293_aa
MAAAITDMADLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLN
GGSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEES
SAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSV
VSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDRLSTRKSLAVAAAPLSQ
RIAASNSQTVPPQLSFPRPLSPRRFAPHGPQDGSNSETVPKRAQILWRSRRGP

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_4|882_bp
atggccgccgctatcaccgacatggccgacctggaggagctctcccgcctgagccctctg
ccccccggcagcccgggttcggcggcgcggggccgggctgagccccccgaggaggaggag
gaagaggaggaggaggaagaggaggcggaggccgaggcggtggcggcgctgctgctgaac
ggcggcagcggtgggggcggcggaggcggcggcggaggagtggggggcggcgaggcagag
acgatgtcggagccgagccccgagagcgccagccaggccggggaggacgaagacgaggag
gaggacgacgaggaggaggaagatgagagcagcagcagcggcgggggtgaggaggagagt
agcgccgagagcctggtgggcagcagcggcgggagcagcagcgacgagacccgctcgttg
agccccggcgccgccagcagcagcagcggggatggggacggcaaggagggcctggaggag
cccaagggaccgcggggcagccagggcggcggcgggggcggcagcagtagcagcagcgta
gtctccagcggcggcgacgagggctacgggactgggggaggcggaagcagcgcgacctcc
gggggccggcggggcagcttggagatgtcgtcggatggggaacccctgagccgcatggac
tcggaggacagactctcaactcggaaatctctcgccgtcgccgccgcgcccctctcgcag
cgcatcgcggcttccaactctcaaaccgttcccccccaactctcctttccccgccctctt
tcccctcggcgcttcgctcctcacggacctcaggacggctctaactcggaaacagtcccc
aaacgggcccagatcctctggcggagcagaagagggccttga

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_5|266_aa
MGKEKTHIHIVVIGHVDSYKSTTTGHLNYKCGSINKRTIEKIEKEAAEMGKGSFKMSTKI
GGIGTVPVGRVETGVLKPGMVVTFAPVNIKTEVKSVEMHHEALSETLSGDNVGFNVKNVS
VKDVRHGNDAGDSKDDPPMEAAGFTAQVIILNLPGQISAGYAPVLDCHTAHTACKFAELK
EKMDRHVGKKLEDGPNFLNSGDAANVDMVPGKPVCVECFSDYPPLGRAAVHDMRQTVAVD
VIKAVNKKAAGAGKVTKSAQKAQKAK

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_5|801_bp
atgggaaaggaaaagactcatatccacattgtcgtcattggacacgtagattcgtacaag
tccaccactactggccatctgaactacaaatgtggtagcatcaacaaaagaaccattgaa
aaaattgagaaggaggctgctgagatgggaaagggctccttcaagatgtctacaaaaatt
ggtggtattggtactgttcctgttggccgagtggagactggtgttctcaaacctggtatg
gtggtcacctttgctccagtcaacattaaaactgaagtaaaatctgtcgaaatgcaccat
gaagctttgagtgaaactctttctggggacaatgtgggcttcaatgtcaagaatgtgtct
gtcaaggatgttcgtcatggcaatgatgctggtgacagcaaagatgacccaccaatggaa
gcggctggcttcactgctcaggtgattatcctgaaccttccaggccaaataagtgctggc
tatgcccctgtactggattgccacacggctcacactgcatgcaagtttgctgagctgaag
gaaaagatggatcgccatgttggtaaaaagctggaagatggccctaacttcttgaactct
ggtgatgctgccaacgttgatatggttcctggcaagcccgtgtgtgttgagtgcttctca
gactacccacctctgggtcgcgctgctgttcatgatatgagacagacagttgcagtggat
gtcatcaaagcagtgaacaagaaggctgctggagctggcaaggtcaccaaatctgcccag
aaagctcaaaaggctaaatga

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_6|742_aa
MYFGIEKPPYPSISSTIMDVDSTISSGRSTPAMMNGQGSTTSSSKNIAYNCCWDQCQACF
NSSPDLADHIRSIHVDGQRGGVFVCLWKGCKVYNTPSTSQSWLQRHMLTHSGDKPFKCVV
GGCNASFASQGGLARHVPTHFSQQNSSKVSSQPKAKEESPSKAGMNKRRKLKNKRRRSLP
RPHDFFDAQTLDAIRHRAICFNLSAHIESLGKGHSVVFHSTVIAKRKEDSGKIKLLLHWM
PEDILPDVWVNESERHQLKTKVVHLSKLPKDTALLLDPNIYRTMPQKRLKSFQHALLPLS
TTFPSGNLPLIIHPSDLDLSVTSKRPFLVPFCLESPVTIVLIFMAMYAKDVAPASFFGFL
TRATAEQKHFSLVWHLMNLINVCYGCLFTLMVVSFAVQKLFSLIRSHLSILASVAIAFGV
LDMKSLPMPIVLSDLQRDLDSHTIIMGDFNTPLSTLDRSARQKVNKDTQELNSALHQADL
IDIYRTLHPKSTEYIFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNCLSDHSAIKLEL
RIKKLTQNRSTTWKLNNLLLSDYWVHNEMKAEIKMFFETNENKDTTYQNLWDTFKAVCRG
KFIALNAHNRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITTIRAELKEIETQKTLQ
KINESRSWFFEKINKIDRPLARLIKKKREKNQIDAIKNDQGDSTTDPTEIQTTIREYYKH
LYANKLENLEEMDKFLDTSSQD

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_6|2229_bp
atgtatttcggtatagaaaaaccaccatacccaagcataagcagtactataatggatgta
gacagcacaatttccagtgggcgttcaactccagcaatgatgaatggacaaggaagcact
acttcttcaagcaaaaatattgcctataattgttgttgggaccagtgccaggcttgcttc
aactctagcccagatctggcagatcacatccgttccatacatgtagatggtcagcgagga
ggggtatttgtttgcttatggaaaggttgtaaagtatataacactccatctaccagtcaa
agttggttacaaaggcatatgctgacacacagtggagacaaacctttcaagtgtgttgtt
ggtggctgcaatgccagctttgcttctcagggagggctagctcgtcatgtacccacacac
ttcagtcagcagaactcctcaaaagtttctagccagccaaaggccaaagaagaatctcct
tctaaagctggaatgaacaaaaggaggaaattaaagaacaaaagacgacgctcattacca
cggccacatgatttcttcgatgcacaaacactggatgcgataagacatcgagccatatgc
tttaacctctcagctcatatagaaagtttagggaagggacacagtgttgtttttcatagt
actgtaatagctaagagaaaagaagattctgggaagatcaaacttttgcttcattggatg
cctgaagacattctgcctgatgtgtgggtgaatgaaagtgaacgacatcagttaaaaact
aaagtagttcatttatcaaagctacccaaagatactgccttgcttttggacccaaacata
tacagaacaatgccgcagaagaggttgaagagctttcagcatgctcttctgccgctctcc
acaacctttccttctggaaacctgcccttgatcattcatccttctgatcttgacttgagc
gtcacttcaaaacggcctttcttggtgcccttttgtctagagtccccagtgactatagtt
ctcatctttatggccatgtatgccaaagatgtagctcccgcctccttctttggctttctg
acaagagcaactgctgagcagaagcacttcagcctcgtctggcatttgatgaatttgatt
aatgtgtgctatggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctc
tttagtttaattagatcccatttgtcaattttggcttctgttgccattgcttttggtgtt
ttagacatgaagtccttgcccatgcctatagtccttagtgacctacaaagagatttagac
tcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcagcg
agacagaaagttaacaaggatacccaggaactgaactcagctctgcaccaagcagaccta
atagacatctacagaactctccaccccaaatcaacagaatatatattcttttcagcacca
caccacacctactccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgt
aaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactc
aggattaagaaactcactcaaaaccgctcaactacatggaaactgaacaacctgctcctg
agtgattactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaat
gagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagaggg
aaatttatagcactaaatgcccacaacagaaagcaggaacgatctaaaattgacacccta
acatcacaattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcagaagg
caagaaataactaccatcagagcagaactgaaggaaatagagacacaaaaaacccttcaa
aaaattaatgaatccaggagctggttttttgaaaagatcaataaaattgatagaccacta
gcaagactaataaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgatcaa
ggggatagcaccaccgatcccacagaaatacaaactaccatcagagaatactataaacac
ctctatgcaaataaactagaaaatctagaagaaatggataagttccttgacacatcctcc
caagactaa

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_7|224_aa
MSELPFAIASKGIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIV
KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFLWNQKRVHITKSILSQKNKAGGITLP
DFKLYYKTTGTKTACLEEAGEGILAVAVEEVLSLVSWGSIPEKCRAAPNQRDWPRSKGSK
GRTDAVAATEGLSVAFGTAPPLQGNSEPPAKWDFESQKKGTERI

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_7|675_bp
atgagtgaactcccattcgcaattgcttcaaagggaataaaatacctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaag
gaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcttcacagaattggaaaaaactactttaaagttcctatggaaccaaaaaaga
gtccacatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaagactacaggaaccaaaacagcatgcttggaggaagcaggg
gaagggatcttggcggtggctgtggaagaggtcctttcacttgtctcttggggatccatc
ccagagaaatgccgagccgctcccaatcagcgggattggccgaggtccaagggcagcaag
ggcagaaccgatgcagtggctgcgacagaggggctgtcggttgcctttgggaccgccccc
cctctccagggaaactcagagcccccagcaaaatgggattttgagagccaaaagaaagga
actgaaagaatctag

>gi568815586f:19339700_19618717|GENSCAN_predicted_peptide_8|336_aa
MKRHFSKDDLHVVNKQMKKWSTSLIVRSMQIKITMSYHLIPVRMAITKKAKNIRCQQGGR
EKGMLIHSSQECELVQPLRNSVWRVLKELKTALPFDPAIPLLGWDVASAAAAQRSQVIPP
KSAWTELAMRQTLTNRREMRRKEGFCFWGSLRELIIMAEGKGKVDTPSHDRQERESRGGV
ATHFQTTRSSICCHYYSQPAGLTLPYRSPCSERRFSVDFFLSLASVMYLQVSQRSSFLIC
SPLQSICSSRSALPADSPVKPHWPFSVPLSEAKKQKQKEPSRCLHATLWLAIGVLPSVLS
PDAYWQRDLSTSLSVSPDFIRKRGLESPWLHEALRT

>gi568815586f:19339700_19618717|GENSCAN_predicted_CDS_8|1011_bp
atgaagagacacttttcaaaagatgacttacatgtggtcaacaagcagatgaaaaaatgg
tcaacatcactgatcgtcagatcaatgcaaatcaaaatcacaatgagttaccatctcata
ccagtcagaatggctattactaaaaaggcaaaaaatatcagatgccagcaaggtggcaga
gaaaagggaatgcttatacacagctcacaggaatgtgaattagttcagccattgcggaat
tcagtttggagagttctcaaagaacttaaaacagcactaccatttgatccagcaatccca
ttgctggggtgggacgtggcctccgcagcagctgcccaaagaagccaggtgataccacct
aaaagtgcatggactgaactcgccatgaggcaaacattgaccaataggagagaaatgaga
cggaaggaaggcttctgtttctggggaagtctcagggaacttatcatcatggcagaaggc
aaagggaaagtagatacaccttcacatgatcggcaggagagagagagcagaggaggagtt
gctacacactttcaaacaaccagatcttccatctgctgccattattattcccagccagca
ggcctaacacttccctatcgatctccttgctctgaacgcaggttttctgtggacttcttc
ctgtctctggcatctgtcatgtacctacaggtcagccagcgttcctctttcctcatttgc
tctcctctgcagtccatctgcagttccaggtctgcattacctgcagattctcccgtgaag
ccgcactggcccttttctgtgcctctctcagaggccaaaaaacagaaacaaaaagaacct
tccagatgcctccatgccactctgtggctagcaattggagtgctgccttccgtgctctcc
ccagatgcatattggcaaagggacctttccacaagtctctctgtctcccctgacttcatc
aggaagagaggcttggaatctccctggttgcatgaagcattaaggacatga