FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB4448, 173 aa 1>>>pF1KB4448 173 - 173 aa - 173 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1516+/-0.000445; mu= 14.4698+/- 0.028 mean_var=92.6463+/-18.935, 0's: 0 Z-trim(111.6): 118 B-trim: 12 in 1/50 Lambda= 0.133248 statistics sampled from 20168 (20303) to 20168 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.238), width: 16 Scan time: 5.360 The best scores are: opt bits E(85289) NP_002468 (OMIM: 160782) myosin light chain 5 [Hom ( 173) 1099 221.2 6.8e-58 XP_016863734 (OMIM: 160782) PREDICTED: myosin ligh ( 173) 1099 221.2 6.8e-58 XP_016863735 (OMIM: 160782) PREDICTED: myosin ligh ( 173) 1099 221.2 6.8e-58 XP_006713949 (OMIM: 160782) PREDICTED: myosin ligh ( 328) 1092 220.1 2.7e-57 XP_016863736 (OMIM: 160782) PREDICTED: myosin ligh ( 132) 847 172.6 2.2e-43 XP_016863737 (OMIM: 160782) PREDICTED: myosin ligh ( 132) 847 172.6 2.2e-43 NP_000423 (OMIM: 160781,608758) myosin regulatory ( 166) 743 152.7 2.6e-37 NP_067046 (OMIM: 613993) myosin regulatory light c ( 175) 736 151.4 7e-37 NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172) 610 127.1 1.3e-29 NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172) 610 127.1 1.3e-29 NP_291024 (OMIM: 609211) myosin regulatory light c ( 172) 610 127.1 1.3e-29 NP_006088 (OMIM: 609905) myosin regulatory light p ( 172) 597 124.6 7.6e-29 XP_011513766 (OMIM: 613993) PREDICTED: myosin regu ( 208) 587 122.8 3.3e-28 XP_016867967 (OMIM: 613993) PREDICTED: myosin regu ( 132) 532 112.0 3.7e-25 XP_011513767 (OMIM: 613993) PREDICTED: myosin regu ( 163) 530 111.7 5.5e-25 XP_016867968 (OMIM: 613993) PREDICTED: myosin regu ( 99) 445 95.2 3.3e-20 XP_011513765 (OMIM: 613993) PREDICTED: myosin regu ( 231) 448 96.1 3.9e-20 XP_005249874 (OMIM: 613993) PREDICTED: myosin regu ( 155) 393 85.4 4.5e-17 NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149) 314 70.2 1.6e-12 NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149) 314 70.2 1.6e-12 NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149) 314 70.2 1.6e-12 NP_008819 (OMIM: 114180,614916,616247) calmodulin ( 149) 314 70.2 1.6e-12 XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150) 314 70.2 1.6e-12 NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197) 314 70.3 2e-12 NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149) 293 66.1 2.7e-11 NP_852667 (OMIM: 609905) myosin regulatory light p ( 118) 271 61.8 4.3e-10 NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens] ( 172) 266 61.0 1.1e-09 NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens] ( 172) 253 58.5 6.1e-09 NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 227 53.3 1.5e-07 NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113) 227 53.3 1.5e-07 NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 227 53.3 1.5e-07 NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113) 227 53.3 1.5e-07 NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 227 53.3 1.5e-07 NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 227 53.3 1.5e-07 NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 227 53.3 1.5e-07 NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167) 221 52.4 4.3e-07 NP_001284694 (OMIM: 602907) centrin-3 isoform 1 [H ( 191) 213 50.9 1.4e-06 NP_001186558 (OMIM: 609930) myosin light chain 6B ( 208) 207 49.8 3.2e-06 NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208) 207 49.8 3.2e-06 NP_062829 (OMIM: 607315) calcium-binding protein 5 ( 173) 195 47.4 1.4e-05 NP_524147 (OMIM: 609931) myosin light polypeptide ( 151) 192 46.7 1.9e-05 XP_016882481 (OMIM: 607315) PREDICTED: calcium-bin ( 284) 195 47.6 2e-05 NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160) 192 46.8 2e-05 NP_059118 (OMIM: 605183) calmodulin-like protein 5 ( 146) 190 46.3 2.4e-05 NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181) 191 46.6 2.5e-05 NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220) 192 46.9 2.5e-05 XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203) 191 46.7 2.7e-05 NP_001317242 (OMIM: 610171) calmodulin-like protei ( 164) 189 46.2 3e-05 XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145) 188 45.9 3.2e-05 NP_066299 (OMIM: 609931) myosin light polypeptide ( 151) 188 46.0 3.2e-05 >>NP_002468 (OMIM: 160782) myosin light chain 5 [Homo sa (173 aa) initn: 1099 init1: 1099 opt: 1099 Z-score: 1160.4 bits: 221.2 E(85289): 6.8e-58 Smith-Waterman score: 1099; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI 70 80 90 100 110 120 130 140 150 160 170 pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 130 140 150 160 170 >>XP_016863734 (OMIM: 160782) PREDICTED: myosin light ch (173 aa) initn: 1099 init1: 1099 opt: 1099 Z-score: 1160.4 bits: 221.2 E(85289): 6.8e-58 Smith-Waterman score: 1099; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI 70 80 90 100 110 120 130 140 150 160 170 pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 130 140 150 160 170 >>XP_016863735 (OMIM: 160782) PREDICTED: myosin light ch (173 aa) initn: 1099 init1: 1099 opt: 1099 Z-score: 1160.4 bits: 221.2 E(85289): 6.8e-58 Smith-Waterman score: 1099; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI 70 80 90 100 110 120 130 140 150 160 170 pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 130 140 150 160 170 >>XP_006713949 (OMIM: 160782) PREDICTED: myosin light ch (328 aa) initn: 1092 init1: 1092 opt: 1092 Z-score: 1149.7 bits: 220.1 E(85289): 2.7e-57 Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 172 aa overlap (2-173:157-328) 10 20 30 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQ :::::::::::::::::::::::::::::: XP_006 PPSASWPCVHTPDCGPGRTLSSCAERRRPEASRKTKKKEGGALRAQRASSNVFSNFEQTQ 130 140 150 160 170 180 40 50 60 70 80 90 pF1KB4 IQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDAMLKEASGPINFTMFLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDAMLKEASGPINFTMFLNL 190 200 210 220 230 240 100 110 120 130 140 150 pF1KB4 FGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASID 250 260 270 280 290 300 160 170 pF1KB4 VAGNLDYKALSYVITHGEEKEE :::::::::::::::::::::: XP_006 VAGNLDYKALSYVITHGEEKEE 310 320 >>XP_016863736 (OMIM: 160782) PREDICTED: myosin light ch (132 aa) initn: 847 init1: 847 opt: 847 Z-score: 900.0 bits: 172.6 E(85289): 2.2e-43 Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 132 aa overlap (42-173:1-132) 20 30 40 50 60 70 pF1KB4 GALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDE :::::::::::::::::::::::::::::: XP_016 MDQNRDGFIDKEDLKDTYASLGKTNVKDDE 10 20 30 80 90 100 110 120 130 pF1KB4 LDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMS 40 50 60 70 80 90 140 150 160 170 pF1KB4 QADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE :::::::::::::::::::::::::::::::::::::::::: XP_016 QADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 100 110 120 130 >>XP_016863737 (OMIM: 160782) PREDICTED: myosin light ch (132 aa) initn: 847 init1: 847 opt: 847 Z-score: 900.0 bits: 172.6 E(85289): 2.2e-43 Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 132 aa overlap (42-173:1-132) 20 30 40 50 60 70 pF1KB4 GALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDE :::::::::::::::::::::::::::::: XP_016 MDQNRDGFIDKEDLKDTYASLGKTNVKDDE 10 20 30 80 90 100 110 120 130 pF1KB4 LDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMS 40 50 60 70 80 90 140 150 160 170 pF1KB4 QADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE :::::::::::::::::::::::::::::::::::::::::: XP_016 QADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 100 110 120 130 >>NP_000423 (OMIM: 160781,608758) myosin regulatory ligh (166 aa) initn: 780 init1: 722 opt: 743 Z-score: 790.7 bits: 152.7 E(85289): 2.6e-37 Smith-Waterman score: 743; 64.0% identity (86.6% similar) in 172 aa overlap (1-172:1-166) 10 20 30 40 50 60 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA :: .:.::. ::: .::::: ::::::::::::::.:::::::::::.::.::.: NP_000 MAPKKAKKRAGGA------NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFA 10 20 30 40 50 70 80 90 100 110 120 pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI .::..:::..:.: :.::: ::::::.::..:::::.:.: :::::::::..::.::: . NP_000 ALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVL 60 70 80 90 100 110 130 140 150 160 170 pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE . .:....: .::.... ::::::: ::.:::::: : ..:::::::. NP_000 KADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 120 130 140 150 160 >>NP_067046 (OMIM: 613993) myosin regulatory light chain (175 aa) initn: 730 init1: 714 opt: 736 Z-score: 783.2 bits: 151.4 E(85289): 7e-37 Smith-Waterman score: 736; 63.4% identity (89.7% similar) in 175 aa overlap (1-173:1-175) 10 20 30 40 50 pF1KB4 MASRK--TKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDT ::::: :. : ... .:::.:::::: :::.:::::::::. .::::::.: : ::..: NP_067 MASRKAGTRGKVAATKQAQRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKADLRET 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB4 YASLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKG :..:::..: ..::::::.:..::::::.::.::::::.::: ::.::.::.:.::.::: NP_067 YSQLGKVSVPEEELDAMLQEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB4 KINKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE .::. .:.::..::::.. ::.::: .. .:.:::.:::.: :.::::.:::: NP_067 VVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE 130 140 150 160 170 >>NP_001138416 (OMIM: 609211) myosin regulatory light ch (172 aa) initn: 586 init1: 341 opt: 610 Z-score: 652.4 bits: 127.1 E(85289): 1.3e-29 Smith-Waterman score: 610; 53.8% identity (79.8% similar) in 173 aa overlap (1-173:1-171) 10 20 30 40 50 60 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA :.:.:.: : : :::.::::. :.:.:::::::::...:::::::::::::.: : NP_001 MSSKKAKTKTTKK-RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA 10 20 30 40 50 70 80 90 100 110 120 pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI :::: : : ::::..:: :::::::::..:::::.::: :..: ::: .: .. : : NP_001 SLGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI 60 70 80 90 100 110 130 140 150 160 170 pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE ...:...:: ...:..: ::::.... : :: ::..: .. .. :: . .. NP_001 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD 120 130 140 150 160 170 >>NP_001138417 (OMIM: 609211) myosin regulatory light ch (172 aa) initn: 586 init1: 341 opt: 610 Z-score: 652.4 bits: 127.1 E(85289): 1.3e-29 Smith-Waterman score: 610; 53.8% identity (79.8% similar) in 173 aa overlap (1-173:1-171) 10 20 30 40 50 60 pF1KB4 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA :.:.:.: : : :::.::::. :.:.:::::::::...:::::::::::::.: : NP_001 MSSKKAKTKTTKK-RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA 10 20 30 40 50 70 80 90 100 110 120 pF1KB4 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI :::: : : ::::..:: :::::::::..:::::.::: :..: ::: .: .. : : NP_001 SLGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI 60 70 80 90 100 110 130 140 150 160 170 pF1KB4 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE ...:...:: ...:..: ::::.... : :: ::..: .. .. :: . .. NP_001 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD 120 130 140 150 160 170 173 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 18:18:18 2016 done: Fri Nov 4 18:18:19 2016 Total Scan time: 5.360 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]