GENSCAN 1.0	Date run:  6-Nov-116	Time: 11:02:26

Sequence gi568815596r:98694535_98946800 : 252266 bp : 45.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4432   4574  143  2  2  107   85    19 0.423   3.57
 1.02 Intr +  10380  10451   72  2  0   83   61    47 0.235   1.10
 1.03 Term +  28734  28832   99  2  0   66   54    69 0.216  -0.57
 1.04 PlyA +  29733  29738    6                               1.05

 2.03 PlyA -  30077  30072    6                               1.05
 2.02 Term -  32033  32003   31  1  1   94   49    32 0.206  -2.77
 2.01 Init -  36683  36514  170  2  2   52   76   292 0.942  21.41
 2.00 Prom -  41280  41241   40                              -4.46

 3.03 PlyA -  41603  41598    6                               1.05
 3.02 Term -  43964  43863  102  2  0  121   45    40 0.213   1.28
 3.01 Init -  55154  55101   54  2  0   68   97    44 0.573   4.58
 3.00 Prom -  71614  71575   40                              -4.46

 4.00 Prom +  74508  74547   40                              -6.46
 4.01 Init +  80681  80771   91  1  1   57   78    74 0.171   3.95
 4.02 Intr +  82751  82818   68  0  2   82   94    25 0.138   1.12
 4.03 Intr +  91943  91996   54  1  0   95  115    69 0.270   9.48
 4.04 Term +  96097  96123   27  0  0  131   38    12 0.521  -1.43
 4.05 PlyA +  97872  97877    6                               1.05

 5.14 PlyA -  99331  99326    6                               1.05
 5.13 Term - 100140  99998  143  1  2   59   43    67 0.495  -2.61
 5.12 Intr - 101730 101586  145  0  1   71   51   141 0.942   8.56
 5.11 Intr - 103003 102744  260  2  2   81   67   160 0.721  10.38
 5.10 Intr - 107816 107719   98  1  2   48   46   116 0.066   3.05
 5.09 Intr - 114852 114720  133  1  1   88   61    24 0.016  -0.60
 5.08 Intr - 129003 127323 1681  0  1   73   99  1575 0.921 144.42
 5.07 Intr - 132635 132441  195  2  0   48   16   199 0.643   8.31
 5.06 Intr - 133693 133549  145  0  1   70   61    88 0.871   4.58
 5.05 Intr - 134144 134027  118  0  1  106   36    73 0.887   3.42
 5.04 Intr - 137978 137810  169  2  1   47   23   207 0.045   9.62
 5.03 Intr - 138463 138328  136  0  1   50   99    32 0.048   1.07
 5.02 Intr - 143753 143585  169  0  1   69   83   224 0.102  19.00
 5.01 Init - 152248 152197   52  1  1   69  110    23 0.207   4.10
 5.00 Prom - 162071 162032   40                              -3.46

 6.00 Prom + 173500 173539   40                              -0.96
 6.01 Init + 176924 176983   60  1  0   79   39    60 0.149   1.45
 6.02 Intr + 178183 178257   75  0  0    6   55   134 0.117   1.61
 6.03 Intr + 190384 190501  118  0  1   81   64    71 0.054   4.04
 6.04 Intr + 227245 227295   51  2  0   88   67    62 0.148   2.98
 6.05 Intr + 237614 237694   81  0  0   96   80    74 0.640   7.01
 6.06 Term + 246678 246766   89  1  2   67   48    76 0.076  -0.68
 6.07 PlyA + 248689 248694    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 141408 141668  261  2  0   74   36   155 0.813   4.07
S.002 Term - 143753 143581  173  0  2   69   38   235 0.893  14.59


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:98694535_98946800|GENSCAN_predicted_peptide_1|104_aa
XMSSLTAGLSGVPKTIPRFSDSLEGLTGLTIELQHREKTHGEKFGRNQLSKHASGEYTRG
ATDIGNKHPLRQAQSQGATCASSMRQQDSRSRRRAGRKTRTPED

>gi568815596r:98694535_98946800|GENSCAN_predicted_CDS_1|315_bp
nctatgagttccttaacagcaggtttgtcaggagttcctaagactatccccaggttcagt
gattcacttgaaggactcacaggactcaccattgagttgcagcacagggaaaagacacac
ggagagaagtttggaagaaaccagctgagcaaacatgcttctggagagtacaccagaggc
gcaactgacattgggaacaaacatcccttaaggcaggcccagtcccaaggtgcaacttgc
gccagcagcatgcgccagcaagatagcagaagcaggaggagagccggccggaagacacgt
acccctgaagattga

>gi568815596r:98694535_98946800|GENSCAN_predicted_peptide_2|66_aa
MAGGVGAARRGGAGRALQRRGRSRRGGRGGPQRRRQRRRRLQQLRRQPREHGDASGGKGK
GRGISV

>gi568815596r:98694535_98946800|GENSCAN_predicted_CDS_2|201_bp
atggctggcggggtcggggcggcccggcggggcggggcggggcgggcgctccagcggcgg
gggcggagccggcggggcgggcggggcggcccgcagcggcggcggcagcggcggcggcgg
ctacagcagctccgccggcagccgcgggagcacggcgacgccagcggcgggaagggaaaa
ggccgaggcatcagcgtgtga

>gi568815596r:98694535_98946800|GENSCAN_predicted_peptide_3|51_aa
MNVHGVFEEKRSRGAVGKVQIRHLFFKVQIKSVLSHKVLLHSVNEQVPGTY

>gi568815596r:98694535_98946800|GENSCAN_predicted_CDS_3|156_bp
atgaatgttcatggtgtttttgaggagaaacgttcaagaggtgctgttggtaaggtccaa
atccgacatctgttcttcaaggttcagatcaagtctgttctctcccacaaagtcctcctc
cattctgtcaatgaacaggtgcctgggacatattga

>gi568815596r:98694535_98946800|GENSCAN_predicted_peptide_4|79_aa
MCQKKTLCCELSEACELAPGNASPTVFGVGECILIVKQCMTAYEEIYYTVLVHGSLGSPH
WRKHLILTDEMTLLTTLDP

>gi568815596r:98694535_98946800|GENSCAN_predicted_CDS_4|240_bp
atgtgtcagaagaagacattatgctgtgagctctctgaagcttgtgagctggccccaggg
aatgcaagtccaactgtctttggtgttggagaatgtatcctcattgttaaacaatgcatg
actgcatatgaagagatttattatacggtattggttcacgggagcctgggcagcccgcac
tggcggaagcacctgatccttacagatgagatgacccttttgacaactctagatccctag

>gi568815596r:98694535_98946800|GENSCAN_predicted_peptide_5|1147_aa
MDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTGSSTWKQSQTRNEVIAI
ESGPVGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRPVRVFSQENVCDRIKALQL
KIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDGLPRSPPEMSLLHDVGPGTTIKANKLTL
LLENRRDLHMNKKRLFLPYRSPSHQYDHPYGSLSGRSEFHPNLCLQGSPLRPHSVVELAK
FGGRDLRVLPSFFHMTASIPLSQVSVVSPDHVSDSTVSARISDNSLAPVADFSYPAESSS
CLDNSAAKHKLQVKPRNQRSSKMRRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEER
PSSGQQDVAPDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPA
TPELAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPED
VASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPA
PEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAA
AESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERGGAELRGAKKFSVS
SCRARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGLPEPQHAKPGPRKLAERGP
QDSGDRAASPAGPRKSPQEAAAAPGTREPCPAAQEPAPSEDRNPFPVKLRSTSLSLKYRD
GASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPALRGTRAPSDQGKGKARPPEPLS
SKPPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKEPRTAEKRPLRRGAEPHMGSQPRGQG
DNEKRSQPESQWWLGIPQCQFQVSARPRQDKTFVSCIRDGQARCNTQRVHGGESAAVDSG
TAVHTEKSLPPAATGPGADGQPAPPWITVTRQKRRGTLDQPPNQEDKPGARTLKSEPGKQ
AKVPERGQVLRANTSVLWVQEGAASWDWGEDPEPVKQADFVRSKSFLITPVKPAVDRKQG
AKLNFKEGLQRGISLSHQNLAAQSAVMMEKELHQLKRASYASTDQPSWMELARKKSQAWS
DMPQIIK

>gi568815596r:98694535_98946800|GENSCAN_predicted_CDS_5|3444_bp
atggacattaagcttcgggaggctgcagaaggccttggggaggacagcacaggaaagaaa
aaatctaaattcaaaacttttaagaagttttttgggaagaagaagagaaaagaatcgccg
tcgtccacaggaagtagcacctggaaacaaagtcagacgaggaatgaggtcattgccatc
gaatccgggccagtgggctacgactccgaggatgagctggaggagtcgaggggcacgctg
ggcagccgggccctttctcacgacagtattttcattcctgagtccggacaggacgctact
cggcctgtgcgggtgttttcccaagaaaatgtgtgtgatcggattaaagctctgcagtta
aaaatacagtgtaatgtgaaaatggggccaccacctcctccaggggggcttcctgccaag
cggggagaggatgccggcatgagctctgaggacgacgggctgcccaggagccccccagag
atgtctctgctgcacgacgtgggtcctggtaccaccataaaggcaaataaacttacactt
ttattggaaaataggagagaccttcacatgaacaagaagaggttgttcctcccgtatcga
agcccatctcaccagtacgatcatccttatggttccctgtccgggcgctccgagtttcat
cccaacttgtgtctgcaggggagcccacttcgacctcactcagtggtggagctggccaag
ttcgggggcagggatctgcgggtattgccttcattctttcacatgactgccagcatccct
ttgtcccaggtctctgtcgtgtctccagaccacgtgagcgacagcaccgtctctgcccgg
atctcagacaacagcctggcaccagtggctgacttcagttatcctgcagaatcctcctcc
tgcctggacaactctgcagctaagcacaagctccaggtcaagccccgcaaccagcggtcg
agtaagatgaggcggctctcatcgcgcgctcagtctgaatccctgagcgacctgacgtgc
accccagaggaggaggaaaacgaggagaagccacttttggaagtcagcccagaagagcgc
cccagctctgggcagcaggacgtggcgccagacagaggccctgagcctgggccaccggcg
cccttgccgccacccggaggggcccgtgccagacgcgcccgcctgcagcactcctccgcg
ctcacggccagcgtggaggaggggggcgtccccggggaggacccctcaagccgcccggcc
accccggagctcgccgagcccgagtcggcccccactctccgcgtggagcccccgtccccg
ccggagggccccccgaatcccggtcccgacggcggaaagcaggatggggaggcgcccccc
gcaggcccgtgtgccccggccacggacaaggcggaggaggtggtctgtgctcccgaagac
gtcgcgagcccgtttcccaccgccatccctgagggggacacgactccccccgagactgac
cccgccgccacctcagaggcgccctctgctcgcgacgggccagaacgcagtgtcccgaag
gaagcggagccgacgccgcccgtgctcccggatgaggagaaggggcccccagggccggcg
cctgagcccgagagagaagcggagacggagcccgagagaggagcggggaccgagcccgag
agaattgggaccgagccctccacggcgcccgccccgagcccgccggcgcccaagagctgc
ctgaaacaccggcccgcggccgccagcgagggccccgccgcgtccccgccgcttgccgct
gcggagtctcccccggtggagcccggccccggttccctcgacgcagaggccgccgccccg
gagcgccccaaggccgagcgagccgaggcgccaccggcgggcgccgagagggcggcgcca
gagcggaaggcggagaggggcggtgccgagctgcgaggcgcgaagaagttctcggtgtcc
tcgtgccgagcgcggcctcgtccgggcgtctcccgcccgctggaacgggccagcggccgc
ctgcccctcgcgaggagcggcccggtctggaggagcgaggcggctcttgacgacctccag
ggtctccccgagccccagcacgcgaaacctggccctcggaagctggcggagcgcggccct
caggactcgggggacagggcggccagcccggccgggccgcgcaagagccctcaggaggcg
gccgccgcgcccggcacgagagagccctgcccagccgcccaggagccggccccgagtgag
gacagaaaccccttccccgtcaagctccggtccacctccctctcgctcaaatacagggat
ggcgcctctcaggaggtgaagggtgtgaagaggtacagtgccgaggtccggttagaaagg
tcgctgaccgtgctcccgaaggaggagaagtgtcccctcgggacggcccccgcccttcga
ggcaccagggcccccagcgaccaaggaaaggggaaggcccggccccccgagccgctcagc
tccaagccgcccctgccccggaagccgcttctgcagagcttcacgctcccgcaccagccc
gcgccccccgacgccggcccgggagagcgggaacccaggaaggagcccaggacggcggag
aaaaggccgctgcgcaggggagctgagccccacatggggagccagccaagaggacaaggg
gacaatgagaagcggtcacaaccagagtcccagtggtggctgggaatcccccagtgtcag
tttcaagtgtctgccaggcccaggcaggacaaaacctttgtgtcctgcatccgggatggc
caggctcgctgtaacacacagcgtgtgcatggaggagagagcgccgccgtggatagcggg
actgcggtgcacactgaaaagagtctgccgcctgcagcaacagggcctggagctgatggg
cagcctgcgccaccctggatcaccgtcactcggcagaagcggagggggaccttggaccag
ccacccaaccaggaagacaagcctggggcacggaccctgaagtctgaaccaggaaagcaa
gccaaggtgcccgagagaggccaggtgcttagagcaaatacttctgttctgtgggtgcag
gagggagcagccagctgggactggggcgaggaccctgagcctgtgaagcaagctgacttt
gttcgcagcaagtctttcctgataacccctgtgaagcccgctgtggaccggaagcagggg
gcaaagctcaacttcaaggaggggctgcaaagaggaatctcattgtcccatcagaacttg
gcagctcagtctgcagtgatgatggagaaggaactgcatcagctgaagagagccagttat
gccagtacagatcagccatcctggatggaacttgccagaaagaaatctcaagcttggagt
gacatgccccagattataaaatag

>gi568815596r:98694535_98946800|GENSCAN_predicted_peptide_6|157_aa
MTEAVSGMSDPEIKACASASLPGDADDAARGPSFDEYDVYKMMYAAPEKQEDGLGPSREC
SQILCLLLQTLEQVTTESASAQKEAPPAPVHSYAKPPASPSCDTSSTGVCRYLDNRRDRR
DTSQHQATGDIQRGIPELMAMNELKALSLSVGRRLRF

>gi568815596r:98694535_98946800|GENSCAN_predicted_CDS_6|474_bp
atgactgaggcagtcagtggaatgtccgaccctgaaatcaaggcctgtgcctccgcaagt
ctcccaggtgatgctgacgatgctgcccgtggaccttcctttgatgagtatgacgtgtac
aaaatgatgtatgcagcacctgaaaaacaggaggatggacttgggccttccagagagtgc
agtcagatcctgtgcctgcttcttcaaaccttggaacaagtgaccactgagtcagcttca
gctcaaaaggaagctcctcctgcacccgtgcacagctacgccaagccaccggccagcccc
tcctgtgacaccagcagtaccggtgtttgcaggtatctagacaacagaagagatcggcgg
gacaccagccagcatcaagccacaggagatattcagagaggaatccctgagctgatggct
atgaatgagctgaaggctctgagtctcagcgtgggaaggcgtctaaggttctaa