GENSCAN 1.0	Date run:  6-Nov-116	Time: 06:20:59

Sequence gi568815580f:50563959_50829851 : 265893 bp : 44.93% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   9973  10097  125  0  2   47   58    89 0.063   1.18
 1.02 Term +  14158  14326  169  1  1  114   39    93 0.426   4.35
 1.03 PlyA +  21179  21184    6                               1.05

 2.00 Prom +  22375  22414   40                              -3.66
 2.01 Init +  26272  26289   18  0  0   63  116    44 0.305   3.20
 2.02 Intr +  61038  61146  109  2  1   47   44   124 0.023   3.76
 2.03 Term +  66556  66611   56  2  2  128   43    51 0.017   2.32
 2.04 PlyA +  67548  67553    6                               1.05

 3.04 PlyA -  70532  70527    6                               1.05
 3.03 Term -  77098  77088   11  2  2  146   44     5 0.223   0.26
 3.02 Intr -  81062  80958  105  0  0  128   59    15 0.420   2.79
 3.01 Init -  87327  86964  364  0  1   63   94    95 0.422   4.03
 3.00 Prom -  92553  92514   40                              -2.66

 4.00 Prom +  95106  95145   40                              -5.86
 4.01 Init + 100001 100546  546  1  0   95   95  1210 0.677 117.31
 4.02 Term + 105243 105251    9  2  0  127   39     0 0.257  -2.81
 4.03 PlyA + 109324 109329    6                               1.05

 5.08 PlyA - 109571 109566    6                               1.05
 5.07 Term - 113299 113145  155  2  2   42   33   103 0.286  -1.72
 5.06 Intr - 121944 121801  144  1  0   39   70   140 0.402   7.55
 5.05 Intr - 124179 124000  180  1  0   70   65    58 0.366   1.54
 5.04 Intr - 124921 124887   35  0  2  115   80    16 0.530   1.37
 5.03 Intr - 129789 129769   21  2  0  111  103    31 0.539   3.56
 5.02 Intr - 132945 132839  107  0  2  136   62    44 0.481   5.61
 5.01 Init - 137035 136973   63  1  0   70   85    11 0.444   0.18
 5.00 Prom - 138596 138557   40                              -2.76

 6.00 Prom + 140120 140159   40                              -9.46
 6.01 Init + 140840 140895   56  1  2   75   72    56 0.310   3.46
 6.02 Intr + 144724 144802   79  1  1   82   48    31 0.231  -1.95
 6.03 Intr + 151121 151265  145  1  1   67  105   135 0.885  12.96
 6.04 Intr + 157980 158141  162  1  0   94   77   243 0.992  23.75
 6.05 Intr + 162004 162217  214  2  1  108   47   341 0.824  29.77
 6.06 Intr + 165200 165892  693  2  0  121   65  1319 0.503 123.52
 6.07 Intr + 167359 167450   92  1  2   90   80    13 0.532   0.34
 6.08 Term + 173139 173212   74  1  2   59   52   108 0.717   2.37
 6.09 PlyA + 175969 175974    6                               1.05

 7.04 PlyA - 179704 179699    6                               1.05
 7.03 Term - 184330 184302   29  2  2   93   47    32 0.054  -2.16
 7.02 Intr - 188707 188603  105  2  0   95   83    22 0.063   2.59
 7.01 Init - 201959 201776  184  2  1   58  100   105 0.770   7.98
 7.00 Prom - 202269 202230   40                              -4.86

 8.07 PlyA - 208060 208055    6                               1.05
 8.06 Term - 223949 223917   33  2  0  101   42    60 0.223   0.29
 8.05 Intr - 230099 230031   69  2  0   92   95    30 0.376   3.48
 8.04 Intr - 236185 236078  108  1  0   64  105    91 0.984   8.88
 8.03 Intr - 241378 241196  183  1  0   59  105   218 0.999  20.58
 8.02 Intr - 242892 242746  147  0  0   54   97   152 0.974  13.13
 8.01 Intr - 255744 255623  122  1  2   95  110    52 0.456   8.31

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 152913 153133  221  1  2   65   54   104 0.825   1.90
S.002 Init + 157134 157242  109  2  1   65  105    45 0.870   4.28


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_1|97_aa
RGKLKLREDVWLVLDDIVTTCFPSIPGLEATSDSTSAFFYPWQFLFSPRRKGRGCISASG
PQVNAAVLNCERSAILEKGKWPESSLKLLIEWNLSRF

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_1|294_bp
aggggaaaactgaagctacgggaagatgtgtggcttgtcttagatgatatagttactacc
tgcttccctagtattccaggactagaagccacttctgattccacatcggcgttcttttat
ccctggcaattcctgtttagtccaaggcgtaaggggaggggctgtatttctgcatctggc
ccccaggtgaatgcagctgttttaaactgcgagcgctcagctatcctggaaaaggggaag
tggccagagagttcattgaagctgctcattgaatggaatctgagccgcttctaa

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_2|60_aa
MALVMKPVALNSTLIHSLGYLEDEDYLEMKDILDDWHLLQDTDQPSVAILGIQEYPGYRC

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_2|183_bp
atggccttggtcatgaagcctgtggcactgaattccactctaattcactctctggggtac
ctggaagatgaggactatctggaaatgaaagacatccttgatgactggcacttgctccag
gacactgaccaaccttccgtagccattctgggcatccaggagtacccaggatataggtgc
tga

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_3|159_aa
MRLHRLGAEWTRKQWSSWTQGDGQWGIHCKLSDETKNKSLNGNPSLPSSTCVPCWFDFML
KKVTIQPSGISQFILITAGTQATEIQKEERTLPRSLLFLEQAQPILAFLGPGANLTGHPT
SDGSRLQIPIPSIILHCKFEQCPLRIAMWQLLEEDGGDS

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_3|480_bp
atgaggctccaccgactgggtgcggagtggacaagaaagcaatggagctcatggacccag
ggagatgggcagtggggaatccactgtaagctctcagatgagacaaagaacaagagcctc
aacgggaaccccagtctccccagcagcacctgcgttccttgctggtttgatttcatgctg
aaaaaggtgaccatccagccttcaggcattagtcagttcatactaattacagcaggaacc
caggcaactgaaatccagaaagaggaaaggactcttccaaggtcactcctgtttttggag
caggcccaacccattttggcatttcttgggcctggggctaaccttacagggcatcctacg
tcagatggctctcgcctgcaaatccccatcccatccattattctccactgcaagtttgag
cagtgtccccttagaatagccatgtggcagcttctagaagaggatggaggtgacagctga

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_4|184_aa
MAEKGDCIASVYGYDLGGRFVDFQPLGFGVNGLVLSAVDSRACRKVAVKKIALSDARSMK
HALREIKIIRRLDHDNIVKVYEVLGPKGTDLQGELFKFSVAYIVQEYMETDLARLLEQGT
LAEEHAKLFMYQLLRGLKYIHSANVLHRDLKPANIFISTEDLVLKIGDFGLARIVDQHYS
HKAR

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_4|555_bp
atggctgagaagggtgactgcatcgccagtgtctatgggtatgacctcggtgggcgcttt
gttgacttccaacccctgggcttcggtgtcaatggtttggtgctgtcggccgtggacagc
cgggcctgccggaaggtcgctgtgaagaagattgccctgagcgatgcccgcagcatgaag
cacgcgctccgagagatcaagatcattcggcgcctggaccacgacaacatcgtcaaagtg
tacgaggtgctcggtcccaagggcactgacctgcagggtgagctgttcaagttcagcgtg
gcgtacatcgtccaggagtacatggagaccgacctggcacgcctgctggagcagggcacg
ctggcagaagagcatgccaagctgttcatgtaccagctgctccgcgggctcaagtacatc
cactccgccaacgtgctgcacagggacctgaagcccgccaacatcttcatcagcacagag
gacctcgtgctcaagattggggatttcgggttggcaaggatcgttgatcagcattactcc
cacaaggcccgctaa

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_5|234_aa
MAAGGAGVVLKGVSVLHLNKLVLKCRVSPPNVCKGPHTRKTPCMSQDLNPTAISWCWITT
GIQWFLGEQVVFGYMNCSLSTAGTQSLDVYTPEKCQHQAGDEGEAAAHDHLSAESLTPRA
GNGFSHLFSVPSLVPELSVKAADQCHRENSMLQRAACTECQYLVPFKKMAGFTTLDSLPK
PSEAQQSPTFLAPGISFVENNFSTDREEELGDGFGMKLLHSDHQALDSHKERAT

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_5|705_bp
atggctgcagggggagctggtgtggttttgaaaggtgtttctgtccttcacctaaacaag
ctggtgctcaagtgccgtgtctctcctccaaatgtgtgcaagggaccccataccaggaag
actccctgtatgtcccaggacctcaaccccactgccatcagctggtgttggattaccacg
ggaatccaatggtttttgggagaacaggtggtatttggttatatgaactgtagcctctca
acggcagggactcagtcattagatgtctataccccagagaagtgccagcaccaagctggg
gatgagggcgaggcagctgcccatgatcacctttcagcagaatccctgaccccgagggca
gggaatgggtttagtcatctgttctcagtacccagcctcgtgcctgaactctctgtgaag
gcagcagatcagtgccaccgagaaaacagcatgctccagagagctgcgtgtaccgagtgt
cagtatctggtgccattcaagaagatggcaggctttacaacattggattctcttcccaaa
ccgtcggaagcccagcagtccccaacctttttggcaccagggatcagtttcgtggaaaac
aatttttccacggaccgggaagaggagctgggagatggttttgggatgaaactgttacac
tcagatcatcaggcattagattctcataaggagcgtgcaacctag

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_6|504_aa
MTAAILGEHHDDQMEGNRGQPRPPQKALAALEVSLMCEAVEPSIQGYLSEGLVTKWYRSP
RLLLSPNNYTKAIDMWAAGCILAEMLTGRMLFAGAHELEQMQLILETIPVIREEDKDELL
RVMPSFVSSTWEVKRPLRKLLPEVNSEAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSC
PEDEPTSQHPFRIEDEIDDIVLMAANQSQLSNWDTCSSRYPVSLSSDLEWRPDRCQDASE
VQRDPRAGSAPLAEDVQVDPRKDSHSSSERFLEQSHSSMERAFEADYGRSCDYKVGSPSY
LDKLLWRDNKPHHYSEPKLILDLSHWKQAAGAPPTATGLADTGAREDEPASLFLEIAQWV
KSTQGGPEHASPPADDPERRLSASPPGRPAPVDGGASPQFDLDVFISRALKLCTKPEDLP
DNKLGDLNGACIPEHPGDLVQTEAFSKERWNILPFLPLVFSSFSSPNTPKDTHRKSSQFP
ELHEDVLNSSSNDVGSIVKPENVT

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_6|1515_bp
atgacagcagccatcctgggagagcatcatgatgaccaaatggaaggaaacagaggacag
cccaggcccccacagaaagccctggcagccttagaagtctctcttatgtgcgaggcagtg
gagccctctattcagggttatctgtcagaagggttggtaacaaagtggtaccgttcccca
cgactgctcctttcccccaataactacaccaaagccatcgacatgtgggccgccggctgc
atcctggctgagatgcttacggggagaatgctctttgctggggcccatgagctggagcag
atgcaactcatcctggagaccatccctgtaatccgggaggaagacaaggacgagctgctc
agggtgatgccttcctttgtcagcagcacctgggaggtgaagaggcctctgcgcaagctg
ctccctgaagtgaacagtgaagccatcgactttctggagaagatcctgacctttaacccc
atggatcgcctaacagctgagatggggctgcaacacccctacatgagcccatactcgtgc
cctgaggacgagcccacctcacaacaccccttccgcattgaggatgagatcgacgacatc
gtgctgatggccgctaaccagagccagctgtccaactgggacacgtgcagttccaggtac
cctgtgagcctgtcgtcggacctggagtggcggcctgaccggtgccaggacgccagcgag
gtacagcgcgacccgcgcgcgggttcggcgccactggctgaggacgtgcaggtggacccg
cgcaaggactcgcacagcagctccgagcgcttcctagagcagtcgcactcgtccatggag
cgcgccttcgaggccgactacgggcgctcctgcgactacaaggtggggtcgccgtcctac
ctggacaagctgctgtggcgcgacaacaagccgcaccactactcggagcccaagctcatc
ctggacctgtcgcactggaagcaggcggccggcgcgccccccacggccacggggctggcg
gacacgggggcgcgcgaggacgagccggccagcctcttcctggagatcgcgcagtgggtc
aagagcacgcagggcggcccagagcacgccagcccgcccgccgacgaccccgagcgccgc
ttgtctgcctcgccccccggccgcccggccccggtggacggcggcgccagcccccagttc
gacctggacgtgttcatctcccgcgccctgaagctctgcaccaagcccgaggacctgccg
gacaataaactgggcgacctcaatggtgcgtgcatccccgagcaccctggcgacctcgtg
cagaccgaggccttctccaaagaaaggtggaacattctaccatttctgccactggtgttc
agctccttctcttcccccaacactcccaaagatacccacaggaagtccagccagtttcca
gaattgcatgaagatgtgcttaattcttccagcaacgatgtgggtagtattgtcaaacca
gaaaatgtcacctga

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_7|105_aa
MDRGWNSLEGSEEDRKWWENSELPRDLLNSFAENTDSDMDNEVQVEVVSDGDVELVGNWN
KVSSLILMEVWLHGPSLHVRVLETRVDVSELMVQGRAPAVTAAAM

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_7|318_bp
atggacagaggttggaacagtttggagggctcagaagaagacagaaagtggtgggaaaat
tcagaacttcctagagacctgttgaacagctttgctgaaaatactgatagtgatatggac
aatgaagtccaggttgaggtggtctcagatggagatgtggaacttgttgggaactggaat
aaagtttcttccctgattctgatggaagtttggctccatggaccaagtctgcatgtcagg
gtgttggagacaagagtggatgtttctgaactaatggtacagggaagagctcctgcagtc
acagcagctgccatgtga

>gi568815580f:50563959_50829851|GENSCAN_predicted_peptide_8|220_aa
XIQGWENLAESSHLATTRESSPPESGTGSGSSRGSRLQEPQVSWKLRFQKREPLKNVFFI
LAERARDPSAKKRHMAMRNLGTMAYEAPDKVRKYKKIVLDLLVYGLYDPVNLEVIHESMK
TLTVVLGKIQGKGLGSFFIDITLQTRTLLDDACKTTFQACSPYLKLKEEYSFQSEEDQRN
TKLYQQLGDAINHVPFKQMNFLQQFANVNQPPVEQQLFLE

>gi568815580f:50563959_50829851|GENSCAN_predicted_CDS_8|663_bp
ngaattcagggctgggaaaatttagccgagtcatcacatttggctactacccgggaaagc
agccctcccgagtcaggaacgggctccggttcatcacgtggcagccgcctgcaggagccg
caggtctcttggaaactgaggttccagaagcgggagcctctgaagaatgtgtttttcatc
ttggcagaaagagctcgggaccccagtgctaaaaagcgtcacatggcaatgagaaacttg
ggaaccatggcctatgaagcccctgacaaggtgagaaagtataagaaaattgtcctcgac
ctgctggtgtatggactgtatgaccctgtgaatttggaagtcatccatgagagtatgaag
actctgaccgtcgttctgggcaagatccaggggaaaggtttgggttccttcttcatagat
atcacccttcagaccaggactttattagatgacgcttgcaaaacaacatttcaagcctgt
tctccatatctgaaactaaaggaggaatacagcttccagagtgaagaagatcaaaggaac
actaagctctaccagcagctgggtgatgctattaatcatgttcctttcaagcagatgaat
ttcctacagcagtttgcaaatgttaaccagccgcccgtggagcagcagctgtttctagaa
tga