GENSCAN 1.0	Date run:  8-Nov-116	Time: 17:42:19

Sequence gi568815589r:110144160_110351464 : 207305 bp : 42.64% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8387   8594  208  1  1   70    9   152 0.205   4.54
 1.02 Intr +   9041   9198  158  0  2   62   38    69 0.203  -1.89
 1.03 Intr +  11160  11334  175  2  1   99   69    42 0.432   1.99
 1.04 Intr +  12160  12338  179  2  2   51   84   188 0.968  13.42
 1.05 Intr +  17489  17614  126  1  0   21   56   120 0.017   2.06
 1.06 Term +  24240  24338   99  2  0  126   37   207 0.993  16.55
 1.07 PlyA +  25302  25307    6                               1.05

 2.13 PlyA -  25905  25900    6                               1.05
 2.12 Term -  29562  29308  255  0  0   21   54   235 0.899   8.00
 2.11 Intr -  29987  29871  117  2  0  101    3    97 0.759   2.24
 2.10 Intr -  31737  31640   98  1  2   94   31    64 0.705   0.11
 2.09 Intr -  32298  32227   72  1  0   58  101    47 0.508   1.46
 2.08 Intr -  34281  34155  127  0  1   65   76    58 0.694   1.63
 2.07 Intr -  34524  34375  150  0  0   80   98    80 0.437   7.64
 2.06 Intr -  45654  45568   87  0  0   76   78    79 0.169   4.95
 2.05 Intr -  45985  45809  177  1  0   62   68    81 0.178   2.69
 2.04 Intr -  57315  56966  350  1  2  124   80   209 0.419  17.85
 2.03 Intr -  63463  63228  236  0  2  161   97   116 0.769  16.21
 2.02 Intr -  70134  69923  212  0  2   28   38   167 0.534   2.49
 2.01 Init -  83342  83235  108  2  0   83   33   106 0.210   4.87
 2.00 Prom -  85745  85706   40                              -3.65

 3.02 PlyA -  86505  86500    6                               1.05
 3.01 Sngl -  88487  87459 1029  2  0   23   42   416 0.851  27.33
 3.00 Prom -  89321  89282   40                              -6.15

 4.09 PlyA -  89485  89480    6                               1.05
 4.08 Term -  90506  89713  794  0  2  -60   43   514 0.007  24.57
 4.07 Intr -  96824  96656  169  2  1   50   93   137 0.541   9.00
 4.06 Intr - 100684 100619   66  1  0  105  102    27 0.633   3.98
 4.05 Intr - 107303 107199  105  2  0   67   84    74 0.541   4.39
 4.04 Intr - 112380 112253  128  1  2  -22  107   134 0.452   3.78
 4.03 Intr - 112985 112697  289  2  1   68   -1   295 0.426  14.50
 4.02 Intr - 115373 115242  132  2  0   43   39   142 0.331   4.72
 4.01 Init - 126991 126962   30  1  0   62  110    73 0.567   6.69
 4.00 Prom - 129414 129375   40                              -4.05

 5.00 Prom + 135663 135702   40                              -2.15
 5.01 Init + 136550 136628   79  1  1  114   65    23 0.805   3.87
 5.02 Intr + 137773 137981  209  2  2   85   21    80 0.127  -1.13
 5.03 Intr + 148032 148381  350  2  2   32   82   313 0.042  18.33
 5.04 Intr + 164062 164122   61  1  1   57   91    49 0.010  -0.08
 5.05 Term + 169664 169768  105  1  0  115   53    29 0.013  -0.47
 5.06 PlyA + 169846 169851    6                               1.05

 6.04 PlyA - 170646 170641    6                               1.05
 6.03 Term - 172384 172212  173  2  2   64   35   130 0.860   2.31
 6.02 Intr - 173511 173445   67  0  1   51   98    53 0.654   0.16
 6.01 Init - 176894 176757  138  2  0   89   90    88 0.985   9.29
 6.00 Prom - 177272 177233   40                              -5.35

 7.00 Prom + 178312 178351   40                              -6.25
 7.01 Init + 185839 185917   79  0  1   98    1   130 0.165   6.57
 7.02 Term + 196794 196969  176  1  2   79   41   185 0.686   9.84
 7.03 PlyA + 197029 197034    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  17489  17694  206  0  2   21   42   254 0.924  10.65
S.002 Sngl +  28356  28640  285  2  0   55   37   189 0.857   5.81
S.003 Sngl -  90456  89713  744  0  0   95   43   466 0.984  38.74


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_1|314_aa
MKKNVIELPGLWHRLFASHSFNDLQDPNSGAVCSVHYWGKSIRSAVTVLMERTSGCKLWT
SEEVVRCGTVILHPLYNILSAYIPSFNSAIINTGFGLQTVTVTVLCNLGWSWHLSLCGHD
IQVLAASTTKGIIGKIIIVILEDTSQKCIWGSVSINPPHEGPEARARHFLGGRDGNGLGE
GKIEKVKPPPSPTTEGPSLQPDLAPEEAAGTQRPKNLMQTLMEDYETHKSKRRERMDDSS
DLLLMEQQVTRRLWGSEKPTGREKAIWLQTLANPKWPPTTLLVLEATRVNRRKSALALRW
EAGIYANQEEEDNE

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_1|945_bp
atgaaaaagaatgtgattgagctcccaggcctgtggcacagactatttgcatcacattca
tttaatgatcttcaagacccaaacagtggtgctgtctgcagtgtccactattgggggaag
agcatccggagtgctgtcaccgtcctaatggagaggacctctggctgcaaactctggacc
tctgaggaagttgtcaggtgtggaacagtaatccttcaccctctttacaacattctttct
gcatacatcccatcatttaattcagccatcatcaacactgggtttgggctccagactgtg
actgtcactgtcttatgtaacttgggctggagttggcatctgagcctctgtggtcatgac
atccaggttttagccgcatcaaccacaaagggcataattggaaaaatcataattgttata
cttgaagatacttctcagaagtgcatttggggctctgtgtcaataaacccaccccatgaa
gggccagaagccagggccaggcatttcttgggagggagggatggaaatggtcttggtgag
gggaaaatagagaaagtcaaacctcctccatcccccaccactgaaggccccagcttgcag
cctgacttagcccctgaagaggctgccggaacccagcggcccaagaatctgatgcagacc
ctcatggaagactatgagacacacaaatctaaaaggcgcgagagaatggatgatagtagt
gatcttcttttaatggaacaacaggttacaagacggctttggggttcagagaagcctacg
ggaagagaaaaggctatttggctacagactctagcaaatccaaaatggcccccaacgacc
ttgctggtcctcgaggccacacgggttaatcgaagaaagagcgcactggctttgcgctgg
gaagcagggatctatgccaaccaggaggaagaagacaacgaataa

>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_2|662_aa
MAEDKNEQVASYMDGSRQREREPVQGISSSMKSSDLAQRRHIPTVSIPNSRNQKLPEAAV
RATPGTDTESFLPHSVSQMIPLNQLTLKKVIQAPPLDEGMASSVAKGSCPTQLCLLFSRI
RMEGLPCPCPALPHFWQLRSHLMAEGSRTQAPGKGPPLSIQFLRAQYEGLKRQQRTQAHL
LVLPKGGNTPAPAESMVNAVWINKERRSSLSLEEADSEVEGRLEEAAQGCLQAPKSPWHT
HLEMHCLVQTSPQDTSHQVHHRGKLVGSDQRLPPEGDTHLFETNQMTQQGTGIPEAAQLP
CQNQKCADDFMSWSFSNFSIILEMDWKSYEDQRECSDYNEAGFRARAWNDLGKKLLENLS
QASSIGVTWKHVQNENYLAPPRPVDSETQEHCPFYDSALTQTVRKGVATSNMTVVPRIPK
RILQCYHANQHPSQELPLNKCPAFLGVEVTDESNNHRATKDASCGLQNLRESSYPSFEFG
GSATVGGASFENLSGVKVLLHQGPQNGSSRLIPVVQSPPTLNLEQRELSIQSLDNSPIKT
WAPITALALIPESLFPGQYSAGRWCKPISTSHACEAANVPQNTPRCSEQEDMVGNPGEKK
AGRVTNAEREKKAAGKEVPGRGGAEGKTRKTDGQGSGAQGSVMGWSSRRLKREGGSRRED
AS

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_2|1989_bp
atggcagaagacaaaaacgagcaagttgcatcttacatggatggcagcaggcaaagagag
agagaacctgtgcaggggatctcctcctcaatgaaatcatcagatcttgctcagaggagg
cacatcccaacagtcagcattccaaacagcaggaatcagaagctgccagaagccgcagtt
agggctacaccaggaacagacacagagtcatttctaccacattctgttagccaaatgata
ccactcaaccaactcacacttaagaaagtgatacaggctccacctcttgatgagggaatg
gcaagctcagttgccaaagggtcctgccccacccagctgtgtttgcttttctcccggatc
cggatggaggggttgccctgcccgtgcccagccctgccccacttctggcagcttaggtct
cacttaatggctgagggctccaggactcaggcccctgggaaagggcccccactcagcatc
cagttcctgcgagcccagtatgaaggcttgaagaggcagcagaggacccaggcccacctc
ctggtgcttccaaaaggaggaaacacacctgctcctgcagaatcgatggtcaatgctgtt
tggattaacaaggagagaagaagctcactgtccctggaagaggcagattctgaggtggag
gggaggctggaggaggctgcccagggctgccttcaggcccccaagtctccatggcacacg
cacctggagatgcattgtttggtccaaacctccccccaggacaccagtcatcaagtacat
cataggggcaagcttgtgggatctgatcaaaggctccctcctgaaggagacacacacttg
tttgaaaccaatcagatgactcagcaaggaaccggaatcccagaggctgcccagcttcca
tgccagaaccagaagtgtgctgatgacttcatgtcttggagtttctctaatttcagcatt
attcttgagatggactggaagtcatatgaagaccagagagaatgcagtgattacaacgag
gcaggcttcagggcaagggcctggaatgatttgggcaagaaactcctggaaaacctctct
caggccagcagcatcggcgtcacctggaaacatgtccaaaatgaaaattatttggcccca
cccagacctgttgactcagaaactcaagagcattgtcccttttatgattctgctttaact
caaactgtcagaaagggtgtagcaacaagcaatatgactgtggtgcccaggattccaaaa
agaatccttcagtgttaccatgccaaccagcatccatcccaagagttgcctctgaataag
tgcccagcattcttaggtgtggaggtgacagatgagtcaaacaatcatagggcaacaaag
gatgcatcctgtggcctgcagaacctcagggaaagctcatatccttcctttgaatttgga
gggtcggccacagttggaggggcctcgttcgagaatctaagtggagtcaaagttctgctt
caccaaggcccacaaaatggtagcagtagactcattccagttgtccagagtccacccact
ttgaacttagaacaaagagaactctccatccagagtttggataactctcccatcaagact
tgggctcctatcacagccttggctttgatccctgagagcctctttcctggacagtacagt
gcggggagatggtgcaagcccatttcgacttcacacgcatgtgaagctgccaatgtgcca
cagaacacccccagatgctcagaacaggaagatatggttggaaatcctggggagaaaaag
gctggaagagttacaaatgcggagagagagaaaaaggcagctggaaaggaagtaccagga
agaggaggggccgagggaaagactaggaaaactgatggtcaggggtcaggggcccagggc
tcggtgatgggatggagcagccggagactgaagcgggagggaggaagtagaagggaggac
gcttcctga

>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_3|342_aa
MFFETNENKDTTYQNLWDTFKAVCKGKFIALNAHKRKQKRSKIDTLTSQLKELEKQEQTH
SKASRRQEITKIRAELKKSETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQID
AIKHDRGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNR
PITGSEIEAIINSSPTKKSPGPDGFTAEFYQRYKLELVPFLLKLFQSIEKKGILSNSFYE
ASIILIPKPGRDTTKRENFRPISLMNIDAKILNKILANRIQQHNKKLIHHDQVGFIPGMQ
GWFNICKSINVIQHINRTSNKNHMIISIDAEKAFDKIQQPSC

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_3|1029_bp
atgttctttgaaaccaacgagaacaaagacacaacataccagaatctctgggacacattc
aaagcagtgtgtaaagggaaatttatagcactaaatgcccacaagagaaagcagaaaaga
tctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacac
tcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaagaaatcagaa
acacaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaac
aaaattgatagaccgctagcaagactaataaagaagaaaagagagaagaatcagatagat
gcaataaaacatgatagaggggatatcaccaccgatcccacagaaatacaaactaccatc
agagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaa
ttcctcgacacatacaccctcccaagactaaaccaggaagaagttgaatctctgaataga
ccaataacaggctctgaaattgaggcaataattaatagctcaccaaccaaaaaaagtcca
ggaccagatggattcacagccgaattctaccagaggtacaagttggagctggtaccattc
cttctgaaactattccaatcaatagaaaaaaagggaatcctctctaactcattttatgag
gccagcatcatcctgataccaaagcctggcagagacacaacaaaaagagagaattttaga
ccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatactagcaaaccgaatc
cagcagcacaacaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaa
ggctggttcaacatatgcaaatcaataaatgtaatccagcatataaacagaaccagcaac
aaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattcaacaacct
tcatgctaa

>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_4|570_aa
MSYESMAVVQITKPYLKRLILYVCLGVVQECAVSSSTFGYDELGGQEPLRDTWDLSDGQE
PNQSPGRFYRTKPLCQAGAAGSAVKMKEQKEVTEKRTVTVNSGEEARTYTPRYFPVTVTQ
HFVGFTWLGGPGRGGPFRGIQPCLGGPHLELYKGREQAASLEALFGALDPFPSVLTAARQ
TPAAKMVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHDVASECEVKCMP
TFQFFKKGQKATEGGELKPEQDWVFVVESSSEWGCREADSTFEGLIILMQYRIKAGEVER
RSQEEADEWLTRITDAEKSLKDKMELKTKARELRDECTSLSSPCDQLEERVSVMEDQMNE
MKQEKFREKRIKRNEQSLQEISDYVKRPNLYLIDVPESDGENGTKLENTLQDIILENFPN
LARQANIQIQEIQRMPKRYSSSRATPGHIIVRFTKVEMKEKMLRAAREKSRVTHKGKPST
LTADLSAETLQARREWGPIFDILKEKNFQSRISYPAKLSFISEGEIKSFTDKQMLRDFVT
TRPALKELLKEALNMERNNQYQLLQKHAKL

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_4|1713_bp
atgagttacgagagtatggctgtggtccagattacaaagccttacctcaaaagactgatt
ctgtatgtctgtctgggtgtggtccaggaatgtgcagtatcatcgagcacctttggctat
gatgaattaggtggtcaagaaccactcagagacacgtgggatctgtctgatggtcaagag
cccaaccagtcccccggtcgtttctaccgcactaaaccgctgtgtcaagctggagcagcg
ggctcagcagtgaaaatgaaagaacagaaggaggttacagagaagagaacggtcacggta
aattccggagaggaggcaaggacgtacacaccgagatacttcccggtcaccgttactcag
cactttgtggggttcacgtggctgggggggccggggcgtggcggcccttttcgaggaatc
cagccctgcctgggcggtccccatctcgagctttataaagggagagagcaagcagcgagt
cttgaagctctgtttggtgctttggatccatttccatcggtccttacagccgctcgtcag
actccagcagccaagatggtgaagcagatcgagagcaagactgcttttcaggaagccttg
gacgctgcaggtgataaacttgtagtagttgacttctcagccacgtggtgtgggccttgc
aaaatgatcaagcctttctttcatgatgttgcttcagagtgtgaagtcaaatgcatgcca
acattccagttttttaagaagggacaaaaggcaactgaaggtggagagttgaagccggag
caggattgggtctttgtagttgagtccagtagtgagtggggatgcagagaagctgacagt
acttttgagggattgattatactgatgcagtatagaatcaaggctggagaagtagagagg
agaagccaagaagaggctgatgagtggctaacgagaataaccgatgcagagaagtcctta
aaggacaagatggagctgaaaaccaaggcacgagaactacgtgatgaatgcacaagcctc
agtagcccatgcgatcaactggaagaaagggtatcagtgatggaagatcaaatgaatgaa
atgaagcaagagaagtttagagaaaaaagaataaaaagaaatgaacaaagcctccaagaa
atatcggactatgtgaaaagaccaaatctatatctgattgatgtacctgaaagtgacggg
gagaatggaaccaagttggaaaacactctgcaggatattatcctggagaacttccccaat
ctagcaaggcaggccaacattcaaattcaggaaatacagagaatgccaaaaagatactct
tcgagcagagcaactccaggacacataattgtcagattcaccaaagttgaaatgaaggaa
aaaatgttaagggcagccagagagaaaagtcgggttacccacaaagggaagcccagcaca
ctaacagctgatctctcagcagaaactctacaagccagaagagagtgggggccaatattc
gacattcttaaagaaaagaattttcaatccagaatttcatatccagccaaactaagcttc
ataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcacc
accaggcctgccctaaaagagctcctgaaggaagcactaaacatggaaaggaacaaccag
taccagctactgcaaaaacatgccaaattgtaa

>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_5|267_aa
MPNQTYQLSILEGSQRGMSLCVHVHAVFSSPNRESGRVDGIARPNQRQRQGWNNSDTFIF
PMAVITSTTAMAQPTITECLPAVKFLSVSKSCEKEDPPAAHALSGKPAANRRKNHPLPAP
QGCSKQGGARDHHQASETQPHFHVGKAAATPASPGRPQRPHLVLQRREPAALPALPDAPA
RGPASCSSPVRAPGPSHQVPGRSVVGDKFLTSRVLLASNKEGKISCFHDDGRQDVRLHKL
LKISFPNNLAPTCLGINHPSHERSDET

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_5|804_bp
atgcccaaccaaacttatcaactttccatattggaaggaagccagcgtggcatgtctctg
tgtgtgcatgtgcatgcggttttctcttcaccaaatagagagagtggcagggtagatggc
attgctaggcccaatcaaagacagagacaaggatggaataattctgatacattcattttc
cccatggcagtgataaccagcacaacagcaatggcacaaccaacaattactgaatgtctt
ccagctgtcaagttcctttcagtttccaagtcttgtgaaaaggaagatcccccggctgcc
cacgcactgtccgggaaaccagcagcaaataggcggaagaaccatccactgcctgctccc
cagggctgcagcaagcaaggtggagccagagaccaccaccaggcaagtgagacccagccc
cacttccacgtgggcaaagctgccgccaccccggccagtccaggacggccgcagaggccc
cacctcgtcctgcaaaggagggagcctgccgcgctcccggctctgccagacgctcctgcc
cgagggcctgcgtcctgcagttccccagtgcgggctcccggtccctcccaccaggtgccc
ggtcggtcggtcgtaggggacaaatttctaaccagcagagttttacttgcttccaacaag
gaaggcaagatttcctgctttcatgatgatggaaggcaggatgtgaggcttcacaagctg
ctaaaaataagctttcctaataacttggcacctacctgtctaggaataaaccaccctagc
catgagagatcagatgaaacctga

>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_6|125_aa
MADYGPSLVAEVFMQRLNEHLAGMQYKQWLKLCPSSRAKKSLSKFQPRHWGDPPVGESGA
AKKKLTCAAPPKTLIKPLAVAKPVLSLVKVKGEVFKYLQRDADGSGEQMGGEESEKGAQI
GSNSN

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_6|378_bp
atggcagattatgggccatccctggttgctgaagttttcatgcagagattgaatgaacat
ctggcagggatgcaatataagcagtggctgaagttatgtcctagttctagggcaaagaag
agcctaagcaaattccagcctagacattggggtgacccacctgtgggagaatctggggct
gcaaagaagaaacttacctgtgcagctcctccaaaaactttaatcaagccccttgcagtt
gcaaagcctgtcttgagtcttgtgaaagtcaaaggggaagtgttcaaatacctgcaacgt
gatgcagatggctctggggaacagatgggtggggaggagtcagagaaaggggcccagata
ggatcaaacagtaattaa

>gi568815589r:110144160_110351464|GENSCAN_predicted_peptide_7|84_aa
MVLVVGLGEEEVAAATAAAVTTVACKSFEKKMVHNERSDTAATPTNPGHVPGVSGSQARL
GQYVYLSVLGLVDFFMEFAAKKLA

>gi568815589r:110144160_110351464|GENSCAN_predicted_CDS_7|255_bp
atggtgctggtagtgggtctaggggaagaggaagtggcagcagccacagcagcagcagtg
acaacagtggcctgtaaatcatttgaaaagaagatggttcataacgaacgctcagacaca
gctgctacaccaacaaaccctggtcatgtccctggggtttctggaagtcaagcaaggctg
ggccagtacgtctacctttcagtgctagggcttgtagactttttcatggaatttgctgct
aagaagcttgcctag