Result of FASTA (ccds) for
pF1KE2008
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2008, 583 aa
1>>>pF1KE2008 583 - 583 aa - 583 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8786+/-0.00116; mu= 11.2293+/- 0.069
mean_var=124.8269+/-26.012, 0's: 0 Z-trim(105.0): 104 B-trim: 94 in 1/51
Lambda= 0.114794
statistics sampled from 8180 (8286) to 8180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.248), width: 16
Scan time: 1.470
The best scores are: opt bits E(33420)
CCDS33810.1 ALCAM gene_id:214|Hs109|chr3 ( 583) 3823 645.2 6.6e-185
CCDS58841.1 ALCAM gene_id:214|Hs109|chr3 ( 570) 3320 561.9 7.7e-160
CCDS31690.1 MCAM gene_id:4162|Hs109|chr11 ( 646) 453 87.2 7.3e-17
>>CCDS33810.1 ALCAM gene_id:214|Hs109|chr3 (583 aa)
initn: 3823 init1: 3823 opt: 3823 Z-score: 3433.4 bits: 645.2 E(33420): 6.6e-185
Smith-Waterman score: 3823; 100.0% identity (100.0% similar) in 583 aa overlap (1-583:1-583)
10 20 30 40 50 60
pF1KE2 MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCRLDVPQNLMFGKWKYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCRLDVPQNLMFGKWKYEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PDGSPVFIAFRSSTKKSVQYDDVPEYKDRLNLSENYTLSISNARISDEKRFVCMLVTEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PDGSPVFIAFRSSTKKSVQYDDVPEYKDRLNLSENYTLSISNARISDEKRFVCMLVTEDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VFEAPTIVKVFKQPSKPEIVSKALFLETEQLKKLGDCISEDSYPDGNITWYRNGKVLHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VFEAPTIVKVFKQPSKPEIVSKALFLETEQLKKLGDCISEDSYPDGNITWYRNGKVLHPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 EGAVVIIFKKEMDPVTQLYTMTSTLEYKTTKADIQMPFTCSVTYYGPSGQKTIHSEQAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EGAVVIIFKKEMDPVTQLYTMTSTLEYKTTKADIQMPFTCSVTYYGPSGQKTIHSEQAVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 DIYYPTEQVTIQVLPPKNAIKEGDNITLKCLGNGNPPPEEFLFYLPGQPEGIRSSNTYTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DIYYPTEQVTIQVLPPKNAIKEGDNITLKCLGNGNPPPEEFLFYLPGQPEGIRSSNTYTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 TDVRRNATGDYKCSLIDKKSMIASTAITVHYLDLSLNPSGEVTRQIGDALPVSCTISASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TDVRRNATGDYKCSLIDKKSMIASTAITVHYLDLSLNPSGEVTRQIGDALPVSCTISASR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 NATVVWMKDNIRLRSSPSFSSLHYQDAGNYVCETALQEVEGLKKRESLTLIVEGKPQIKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NATVVWMKDNIRLRSSPSFSSLHYQDAGNYVCETALQEVEGLKKRESLTLIVEGKPQIKM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 TKKTDPSGLSKTIICHVEGFPKPAIQWTITGSGSVINQTEESPYINGRYYSKIIISPEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TKKTDPSGLSKTIICHVEGFPKPAIQWTITGSGSVINQTEESPYINGRYYSKIIISPEEN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 VTLTCTAENQLERTVNSLNVSAISIPEHDEADEISDENREKVNDQAKLIVGIVVGLLLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTLTCTAENQLERTVNSLNVSAISIPEHDEADEISDENREKVNDQAKLIVGIVVGLLLAA
490 500 510 520 530 540
550 560 570 580
pF1KE2 LVAGVVYWLYMKKSKTASKHVNKDLGNMEENKKLEENNHKTEA
:::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVAGVVYWLYMKKSKTASKHVNKDLGNMEENKKLEENNHKTEA
550 560 570 580
>>CCDS58841.1 ALCAM gene_id:214|Hs109|chr3 (570 aa)
initn: 3313 init1: 3313 opt: 3320 Z-score: 2983.3 bits: 561.9 E(33420): 7.7e-160
Smith-Waterman score: 3697; 97.6% identity (97.8% similar) in 583 aa overlap (1-583:1-570)
10 20 30 40 50 60
pF1KE2 MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCRLDVPQNLMFGKWKYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCRLDVPQNLMFGKWKYEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PDGSPVFIAFRSSTKKSVQYDDVPEYKDRLNLSENYTLSISNARISDEKRFVCMLVTEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PDGSPVFIAFRSSTKKSVQYDDVPEYKDRLNLSENYTLSISNARISDEKRFVCMLVTEDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VFEAPTIVKVFKQPSKPEIVSKALFLETEQLKKLGDCISEDSYPDGNITWYRNGKVLHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VFEAPTIVKVFKQPSKPEIVSKALFLETEQLKKLGDCISEDSYPDGNITWYRNGKVLHPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 EGAVVIIFKKEMDPVTQLYTMTSTLEYKTTKADIQMPFTCSVTYYGPSGQKTIHSEQAVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EGAVVIIFKKEMDPVTQLYTMTSTLEYKTTKADIQMPFTCSVTYYGPSGQKTIHSEQAVF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 DIYYPTEQVTIQVLPPKNAIKEGDNITLKCLGNGNPPPEEFLFYLPGQPEGIRSSNTYTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DIYYPTEQVTIQVLPPKNAIKEGDNITLKCLGNGNPPPEEFLFYLPGQPEGIRSSNTYTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 TDVRRNATGDYKCSLIDKKSMIASTAITVHYLDLSLNPSGEVTRQIGDALPVSCTISASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TDVRRNATGDYKCSLIDKKSMIASTAITVHYLDLSLNPSGEVTRQIGDALPVSCTISASR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 NATVVWMKDNIRLRSSPSFSSLHYQDAGNYVCETALQEVEGLKKRESLTLIVEGKPQIKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NATVVWMKDNIRLRSSPSFSSLHYQDAGNYVCETALQEVEGLKKRESLTLIVEGKPQIKM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 TKKTDPSGLSKTIICHVEGFPKPAIQWTITGSGSVINQTEESPYINGRYYSKIIISPEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TKKTDPSGLSKTIICHVEGFPKPAIQWTITGSGSVINQTEESPYINGRYYSKIIISPEEN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 VTLTCTAENQLERTVNSLNVSAISIPEHDEADEISDENREKVNDQAKLIVGIVVGLLLAA
:::::::::::::::::::::: .::::::::::::::::::::::::
CCDS58 VTLTCTAENQLERTVNSLNVSA-------------NENREKVNDQAKLIVGIVVGLLLAA
490 500 510 520
550 560 570 580
pF1KE2 LVAGVVYWLYMKKSKTASKHVNKDLGNMEENKKLEENNHKTEA
:::::::::::::::::::::::::::::::::::::::::::
CCDS58 LVAGVVYWLYMKKSKTASKHVNKDLGNMEENKKLEENNHKTEA
530 540 550 560 570
>>CCDS31690.1 MCAM gene_id:4162|Hs109|chr11 (646 aa)
initn: 222 init1: 140 opt: 453 Z-score: 416.4 bits: 87.2 E(33420): 7.3e-17
Smith-Waterman score: 645; 24.7% identity (59.8% similar) in 590 aa overlap (31-575:36-607)
10 20 30 40 50
pF1KE2 MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCRLDVPQ-NLMFGKWKYE
:. :.: .. : :. : :: :
CCDS31 LVCAFLLAACCCCPRVAGVPGEAEQPAPELVEVEVGSTALLKCGLSQSQGNLSHVDWFSV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 KPDGSPVFIAFRSSTKKSVQYDDVPEYKDRLNLSE-NYTLSISNARISDEKRFVCMLVTE
. . ... :.. .: . ::..::.:.. . ::..... .::. :.:. .
CCDS31 HKEKRTLIFRVRQGQGQS----EPGEYEQRLSLQDRGATLALTQVTPQDERIFLCQG-KR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 DNVFEAPTIVKVFKQPSKPEIVSKALFL--ETEQLKKLGDCISEDSYPDGNITWYRNGKV
: ..:.: : .:.: . : . .... .... :.....:: .. ::.::.
CCDS31 PRSQEYRIQLRVYKAPEEPNIQVNPLGIPVNSKEPEEVATCVGRNGYPIPQVIWYKNGRP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 LHPLEGAVVIIFKKEMDPVTQLYTMTSTLEYKTTKADIQMPFTCSVTYYGPSGQKTIHSE
:. .. : : .. .. . :::. : :. . .: : . : : ..: :::.. .:.
CCDS31 LKEEKNRVHIQSSQTVES-SGLYTLQSILKAQLVKEDKDAQFYCELNYRLPSGNHMKESR
190 200 210 220 230
240 250 260 270 280 290
pF1KE2 QAVFDIYYPTEQVTIQVLPPKNAIKEGDNITLKCLGNGNPPPEEFLFYLPGQPEGIRSSN
... ..::::.: ..: : . .:::: . ..::..:::::. : . : . : ..
CCDS31 EVTVPVFYPTEKVWLEV-EPVGMLKEGDRVEIRCLADGNPPPH---FSISKQNPSTREAE
240 250 260 270 280 290
300 310 320 330 340
pF1KE2 TYTLTD--------VRRNATGDYKCSLIDKKSMIASTA----ITVHYL-DLSLNPSGEVT
: .: .:.. .: :.:. .: .::. . . :.:. :. ..:..
CCDS31 EETTNDNGVLVLEPARKEHSGRYECQGLDLDTMISLLSEPQELLVNYVSDVRVSPAAP-E
300 310 320 330 340 350
350 360 370 380 390
pF1KE2 RQIGDALPVSCTISASRNATVVWMKDNIR--LRSSP--SFSSLHYQDAGNYVCETALQEV
:: :..: ..: .:.. :.... :. .: .. .:. . .:.: : ... .
CCDS31 RQEGSSLTLTCEAESSQDLEFQWLREETGQVLERGPVLQLHDLKREAGGGYRCVASVPSI
360 370 380 390 400 410
400 410 420 430 440 450
pF1KE2 EGLKKRESLTLIVEGKPQI--KMTKKTDPSGLSKTIICHVEGFPKPAIQWTITGSGSVIN
::.. . ... . : : . : : .. .. :.. : :.:.:.:...:..:
CCDS31 PGLNRTQLVNVAIFGPPWMAFKERKVWVKENMVLNLSCEASGHPRPTISWNVNGTAS---
420 430 440 450 460 470
460 470 480 490 500
pF1KE2 QTEESPYINGRYYS--KIIISPEENVT-LTCTAENQLERTVNSLNVSAISI----PE---
. ...: : : .....:: : . ::: :.: .... : . ... :.
CCDS31 EQDQDPQ---RVLSTLNVLVTPELLETGVECTASNDLGKNTSILFLELVNLTTLTPDSNT
480 490 500 510 520
510 520 530 540 550
pF1KE2 -----------HDEADEISDENR-EKVNDQAKLIVGIVVGLLLAALVAGVVYWLYMKKSK
: .:. : : . . .... .::...: .:. :....:.:.:: ::.:
CCDS31 TTGLSTSTASPHTRANSTSTERKLPEPESRGVVIVAVIVCILVLAVLGAVLYFLY-KKGK
530 540 550 560 570 580
560 570 580
pF1KE2 TASKHVNKDLGNMEENKKLEENNHKTEA
.. .:. .. ..: :
CCDS31 LPCRRSGKQEITLPPSRKSELVVEVKSDKLPEEMGLLQGSSGDKRAPGDQGEKYIDLRH
590 600 610 620 630 640
583 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Apr 23 11:12:16 2019 done: Tue Apr 23 11:12:17 2019
Total Scan time: 1.470 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]